All Stories

  1. Performance evaluation of Java/PCJ implementation of parallel algorithms on the cloud (extended version)

    Article • Concurrency and Computation Practice and Experience, August 2021, Wiley

    prof. Piotr Bała

  2. PCJ Java library as a solution to integrate HPC, Big Data and Artificial Intelligence workloads

    Article • Journal Of Big Data, April 2021, Springer Science + Business Media

    prof. Piotr Bała

  3. Performance Evaluation of Java/PCJ Implementation of Parallel Algorithms on the Cloud

    Article • January 2021, Springer Science + Business Media

    prof. Piotr Bała

  4. Lightning Talks of EduHPC 2020

    Article • November 2020, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  5. Machine Learning for detection of viral sequences in human metagenomic datasets

    Article • BMC Bioinformatics, September 2018, Springer Science + Business Media

    prof. Piotr Bała

  6. Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library

    Article • Journal of Computational Biology, August 2018, Mary Ann Liebert Inc

    prof. Piotr Bała

  7. PCJ – Java Library for Highly Scalable HPC and Big Data Processing

    Article • July 2018, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  8. Evaluation of the Parallel Performance of the Java and PCJ on the Intel KNL Based Systems

    Article • January 2018, Springer Science + Business Media

    prof. Piotr Bała

  9. Big Data Analytics in Java with PCJ Library: Performance Comparison with Hadoop

    Article • January 2018, Springer Science + Business Media

    prof. Piotr Bała

  10. Massively Parallel Sequence Alignment with BLAST Through Work Distribution Implemented Using PCJ Library

    Article • January 2017, Springer Science + Business Media

    prof. Piotr Bała

  11. Level-Synchronous BFS Algorithm Implemented in Java Using PCJ Library

    Article • December 2016, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  12. A case study of software load balancing policies implemented with the PGAS programming model

    Article • July 2016, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  13. Parallel Differential Evolution in the PGAS Programming Model Implemented with PCJ Java Library

    Article • January 2016, Springer Science + Business Media

    prof. Piotr Bała

  14. The Performance Evaluation of the Java Implementation of Graph500

    Article • January 2016, Springer Science + Business Media

    prof. Piotr Bała

  15. Heteroplasmic substitutions in the entire mitochondrial genomes of human colon cells detected by ultra-deep 454 sequencing

    Article • Forensic Science International Genetics, March 2015, Elsevier

    prof. Piotr Bała

  16. On-line Service for Teaching Parallel Programming

    Article • January 2015, Springer Science + Business Media

    prof. Piotr Bała

  17. Study of dynamics of structured knowledge: Qualitative analysis of different mapping approaches

    Article • Journal of Information Science, December 2014, SAGE Publications

    prof. Piotr Bała

  18. PCJ - Java library for high performance computing in PGAS model

    Article • July 2014, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  19. Grid services for genomic research. Polish national grid perspective

    Article • July 2014, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  20. Evaluating PCJ library for graph problems - Graph500 in PCJ

    Article • July 2014, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  21. Development of Domain-Specific Solutions Within the Polish Infrastructure for Advanced Scientific Research

    Article • January 2014, Springer Science + Business Media

    prof. Piotr Bała

  22. Processing the Biomedical Data on the Grid Using the UNICORE Workflow System

    Article • January 2013, Springer Science + Business Media

    prof. Piotr Bała

  23. PCJ - New Approach for Parallel Computations in Java

    Article • January 2013, Springer Science + Business Media

    prof. Piotr Bała

  24. Parallel computations in Java with PCJ library

    Article • July 2012, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  25. Parallel Version of Image Segmentation Algorithm Using Polygonal Markov Fields

    Article • January 2012, Springer Science + Business Media

    prof. Piotr Bała

  26. Seamless Access to the PL-Grid e-Infrastructure Using UNICORE Middleware

    Article • January 2012, Springer Science + Business Media

    prof. Piotr Bała

  27. Polish Computational Research Space for International Scientific Collaborations

    Article • January 2012, Springer Science + Business Media

    prof. Piotr Bała

  28. Training in the PL-Grid as Key Component to Attract Users to Grid e-Infrastructures

    Article • January 2012, Springer Science + Business Media

    prof. Piotr Bała

  29. Distributed Collaborative Visualization on Mobile Devices Using Interactive Video Streaming Techniques

    Article • January 2012, Springer Science + Business Media

    prof. Piotr Bała

  30. Key aspects of the UNICORE 6 security model

    Article • Future Generation Computer Systems, February 2011, Elsevier

    prof. Piotr Bała

  31. Neural Networks Aided Automatic Keywords Selection

    Article • January 2011, Springer Science + Business Media

    prof. Piotr Bała

  32. UNICORE 6 — Recent and Future Advancements

    Article • Annals of Telecommunications, September 2010, Springer Science + Business Media

    prof. Piotr Bała, Andreas Schreiber

  33. UNICORE Virtual Organizations System

    Article • January 2010, Springer Science + Business Media

    prof. Piotr Bała

  34. Towards a Common Authorization Infrastructure for the Grid

    Article • January 2010, Springer Science + Business Media

    prof. Piotr Bała

  35. Contests Hosting Service as a tool to teach programming

    Article • Annales Universitatis Mariae Curie-Sklodowska sectio AI – Informatica, January 2009, Wydawnictwo Uniwersyteu Marii Curi-Sklodowskiej w Lublinie

    prof. Piotr Bała

  36. Unicore 6 as a platform for desktop grid

    Article • October 2008, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  37. Development of heart motion reconstruction framework based on the 4D echocardiographic data

    Article • Annales Universitatis Mariae Curie-Sklodowska sectio AI – Informatica, January 2008, Wydawnictwo Uniwersyteu Marii Curi-Sklodowskiej w Lublinie

    prof. Piotr Bała

  38. Chemomentum - UNICORE 6 Based Infrastructure for Complex Applications in Science and Technology

    Article • January 2008, Springer Science + Business Media

    prof. Piotr Bała

  39. Web Services Interfaces and Open Standards Integration into the European UNICORE 6 Grid Middleware

    Article • October 2007, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  40. GridBeans: Support e-Science and Grid Applications

    Article • December 2006, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  41. Parallel Computing in Java: Looking for the Most Effective RMI Implementation for Clusters

    Article • January 2006, Springer Science + Business Media

    prof. Piotr Bała

  42. Real-Time Visualization in the Grid Using UNICORE Middleware

    Article • January 2006, Springer Science + Business Media

    prof. Piotr Bała

  43. Generation of Dynamic Heart Model Based on 4D Echocardiographic Images

    Article • January 2006, Springer Science + Business Media

    prof. Piotr Bała

  44. A DRMAA-based target system interface framework for UNICORE

    Article • January 2006, Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  45. SCC-DFTB energy barriers for single and double proton transfer processes in the model molecular systems malonaldehyde and porphycene

    Article • International Journal of Quantum Chemistry, January 2005, Wiley

    prof. Piotr Bała

  46. Parallelization of the quantum dynamics code for cluster architecture and its applications to the Gross-Pitaevskii equation

    Article • International Journal of Quantum Chemistry, January 2005, Wiley

    prof. Piotr Bała

  47. UNICORE as Uniform Grid Environment for Life Sciences

    Article • January 2005, Springer Science + Business Media

    prof. Piotr Bała

  48. Fast QM/MM method and its application to molecular systems

    Article • Chemical Physics Letters, October 2004, Elsevier

    prof. Piotr Bała

  49. Life sciences grid in EUROGRID and GRIP projects

    Article • New Generation Computing, June 2004, Springer Science + Business Media

    prof. Piotr Bała

  50. Hierarchical Communication for the Parallel Simulations in the Distributed Environment

    Article • January 2004, Springer Science + Business Media

    prof. Piotr Bała

  51. Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices

    Article • January 2004, Springer Science + Business Media

    prof. Piotr Bała

  52. Interactive Visualization for the UNICORE Grid Environment

    Article • January 2004, Springer Science + Business Media

    prof. Piotr Bała

  53. EUROGRID—European computational grid testbed

    Article • Journal of Parallel and Distributed Computing, May 2003, Elsevier

    prof. Piotr Bała

  54. Uniform Access to the Distributed Resources for the Computational Chemistry Using UNICORE

    Article • January 2003, Springer Science + Business Media

    prof. Piotr Bała

  55. Molecular Dynamics Simulations of the First Steps of the Reaction Catalyzed by HIV-1 Protease

    Article • Biophysical Journal, August 2002, Elsevier

    prof. Piotr Bała

  56. The Performance of Different Communication Mechanisms and Algorithms Used for Parallelization of Molecular Dynamics Code

    Article • January 2002, Springer Science + Business Media

    prof. Piotr Bała

  57. Web Based Real Time System for Wavepacket Dynamics

    Article • January 2002, Springer Science + Business Media

    prof. Piotr Bała

  58. BioGRID — Uniform Platform for Biomolecular Applications

    Article • January 2002, Springer Science + Business Media

    prof. Piotr Bała

  59. Application of Pfortran and Co-Array Fortran in the Parallelization of the GROMOS96 Molecular Dynamics Module

    Article • Scientific Programming, January 2001, Hindawi Publishing Corporation

    prof. Piotr Bała

  60. Quantum-Dynamical Picture of a Multistep Enzymatic Process: Reaction Catalyzed by Phospholipase A2

    Article • Biophysical Journal, September 2000, Elsevier

    prof. Piotr Bała

  61. Pfortran and Co-Array Fortran as Tools for Parallelization of a Large-Scale Scientific Application

    Article • January 2000, Springer Science + Business Media

    prof. Piotr Bała

  62. Molecular dynamics study of the tautomeric equilibrium in the Mannich base

    Article • Chemical Physics Letters, June 1998, Elsevier

    prof. Piotr Bała

  63. Advanced calculations and visualization of enzymatic reactions with the combined quantum classical molecular dynamics code

    Article • January 1998, Springer Science + Business Media

    prof. Piotr Bała

  64. Parallel version of a quantum classical molecular dynamics code for complex molecular and biomolecular systems

    Article • January 1997, Springer Science + Business Media

    prof. Piotr Bała

  65. Quantum-Classical Molecular Dynamics Simulations of Proton Transfer Processes in Molecular Complexes and in Enzymes

    Article • The Journal of Physical Chemistry, January 1996, American Chemical Society (ACS)

    prof. Piotr Bała

  66. Density functional based parametrization of a valence bond method and its applications in quantum-classical molecular dynamics simulations of enzymatic reactions

    Article • International Journal of Quantum Chemistry, January 1996, Wiley

    prof. Piotr Bała

  67. Mechanism of generation of visible luminescence from porous silicon

    Article • October 1995, SPIE

    prof. Piotr Bała

  68. Quantum-classical molecular dynamics and its computer implementation

    Article • Computers & Chemistry, September 1995, Elsevier

    prof. Piotr Bała

  69. Tunneling in double-barrier ZnSe/ZnTe structures ? time-dependent analysis

    Article • Applied Physics A, March 1995, Springer Science + Business Media

    prof. Piotr Bała

  70. Extended Hellmann-Feynman theorem for non-stationary states and its application in quantum-classical molecular dynamics simulations

    Article • Chemical Physics Letters, March 1994, Elsevier

    prof. Piotr Bała

  71. Applications of quantum-classical and quantum-stochastic molecular dynamics simulations for proton transfer processes

    Article • Chemical Physics, March 1994, Elsevier

    prof. Piotr Bała

  72. A comparative study of time dependent quantum mechanical wave packet evolution methods

    Article • The Journal of Chemical Physics, February 1992, American Institute of Physics

    prof. Piotr Bała

  73. BLAST Application on the GPE/UnicoreGS Grid

    Article • Springer Science + Business Media

    prof. Piotr Bała

  74. Supporting NAMD Application on the Grid Using GPE

    Article • Springer Science + Business Media

    prof. Piotr Bała

  75. UNICORE

    Article • IGI Global

    prof. Piotr Bała

  76. Flexible Streaming Infrastructure for UNICORE

    Article • Springer Science + Business Media

    prof. Piotr Bała

  77. Estimating Metabolic Pathways Parameters Using Distributed Monte Carlo Method

    Article • Springer Science + Business Media

    prof. Piotr Bała

  78. Asynchronous Parallel Molecular Dynamics Simulations

    Article • Springer Science + Business Media

    prof. Piotr Bała

  79. UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids

    Article • Springer Science + Business Media

    prof. Piotr Bała

  80. Reconstruction of Heart Motion from 4D Echocardiographic Images

    Article • Springer Science + Business Media

    prof. Piotr Bała

  81. Prediction of the Jobs Execution on the Community Grid with Added Network Latency

    Article • Springer Science + Business Media

    prof. Piotr Bała

  82. Enabling Reconfigurable Hardware Accelerators for the Grid

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    prof. Piotr Bała

  83. UNICORE

    Article • IGI Global

    prof. Piotr Bała