All Stories

  1. Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis

    Article • Genome Medicine, May 2016, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra

  2. LOGIQA: a database dedicated to long-range genome interactions quality assessment

    Article • BMC Genomics, May 2016, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra

  3. Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification

    Article • F1000Research, March 2016, Faculty of 1000, Ltd.

    PhD Marco Antonio MA Mendoza Parra

  4. ChIP-Seq quality

    Article • F1000Research, January 2016, Faculty of 1000, Ltd.

    PhD Marco Antonio MA Mendoza Parra

  5. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets

    Article • January 2016, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra

  6. Retinoid Receptor-Selective Modulators

    Article • June 2015, Wiley

    PhD Marco Antonio MA Mendoza Parra

  7. The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer

    Article • Genome Research, February 2015, Cold Spring Harbor Laboratory Press

    PhD Marco Antonio MA Mendoza Parra

  8. Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis

    Article • Genomics Data, December 2014, Elsevier

    PhD Marco Antonio MA Mendoza Parra

  9. Senescence‐secreted factors activate Myc and sensitize pretransformed cells to TRAIL‐induced apoptosis

    Article • Aging Cell, March 2014, Wiley

    PhD Marco Antonio MA Mendoza Parra

  10. Integrative Genomics to Dissect Retinoid Functions

    Article • January 2014, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra

  11. Genome-wide studies of nuclear receptors in cell fate decisions

    Article • Seminars in Cell and Developmental Biology, December 2013, Elsevier

    PhD Marco Antonio MA Mendoza Parra

  12. Characterising ChIP-seq binding patterns by model-based peak shape deconvolution

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra

  13. Sequential chromatin immunoprecipitation protocol for global analysis through massive parallel sequencing (reChIP-seq)

    Article • Protocol Exchange, January 2012, Nature

    PhD Marco Antonio MA Mendoza Parra

  14. Single-tube linear DNA amplification for genome-wide studies using a few thousand cells

    Article • Nature Protocols, January 2012, Nature

    PhD Marco Antonio MA Mendoza Parra

  15. Spo11-Accessory Proteins Link Double-Strand Break Sites to the Chromosome Axis in Early Meiotic Recombination

    Article • Cell, August 2011, Elsevier

    PhD Marco Antonio MA Mendoza Parra

  16. Single-tube linear DNA amplification (LinDA) for robust ChIP-seq

    Article • Nature Methods, June 2011, Nature

    PhD Marco Antonio MA Mendoza Parra

  17. Analysis of Protein–DNA Interactions During Meiosis by Quantitative Chromatin Immunoprecipitation (qChIP)

    Article • January 2009, Springer Science + Business Media

    PhD Marco Antonio MA Mendoza Parra