All Stories

  1. BioHackathon 2015: Semantics of data for life sciences and reproducible research

    Article • F1000Research, February 2020, Faculty of 1000, Ltd.

    Shin Kawano, Dr. Hidemasa Bono, Dr Kevin Bretonnel Cohen, alex garcia, Robert Hoehndorf, Tatsuya Kushida, Mr Bruno Vieira, Shuichi Kawashima, Rutger Vos, Attayeb Mohsen, Kazuharu Arakawa, hongyan Wu

  2. GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis For GEO Datasets

    Article • April 2017, Cold Spring Harbor Laboratory Press

    Mr Bruno Vieira

  3. 4Pipe4 – A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information

    Article • BMC Bioinformatics, January 2016, Springer Science + Business Media

    Mr Bruno Vieira

  4. Anatomy of BioJS, an open source community for the life sciences

    Article • eLife, July 2015, eLife

    Mr Bruno Vieira, Björn Grüning, Saket Choudhary

  5. The Open Science Peer Review Oath

    Article • F1000Research, November 2014, Faculty of 1000, Ltd.

    Mr Neil P Chue Hong, Leo Lahti, Mr Bruno Vieira, Prof Teresa K Attwood, Dr Robert P Davey, Dr Konrad U Förstner, Michael Markie

  6. Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling

    Article • PLoS ONE, May 2014, PLOS

    Mr Bruno Vieira

  7. Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

    Article • Frontiers in Plant Science, March 2014, Frontiers

    Mr Bruno Vieira

  8. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Article • GigaScience, July 2013, Oxford University Press (OUP)

    Mr Bruno Vieira, Dr Keith R Bradnam