All Stories

  1. The need to consider new strategies for containing the spread of COVID-19 where case count is low

    Article • F1000Research, May 2020, Faculty of 1000, Ltd.

    Philip Machanick

  2. Transcription factor motif quality assessment requires systematic comparative analysis

    Article • F1000Research, March 2016, Faculty of 1000, Ltd.

    Philip Machanick

  3. Transcription factor binding models are best tested for quality by using multiple different measures

    Article • F1000Research, December 2015, Faculty of 1000, Ltd.

    Philip Machanick, Mr Caleb Kibet

  4. How General-Purpose can a GPU be?

    Article • South African Computer Journal, December 2015, South African Institute of Computer Scientists and Information Technologists

    Philip Machanick

  5. How to establish a bioinformatics postgraduate degree programme--a case study from South Africa

    Article • Briefings in Bioinformatics, May 2014, Oxford University Press (OUP)

    Philip Machanick

  6. Motif enrichment compared with that on another DNA sequence set, both derived from ChIP-seq

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Philip Machanick

  7. Inferring direct DNA binding from ChIP-seq

    Article • Nucleic Acids Research, May 2012, Oxford University Press (OUP)

    Philip Machanick

  8. Identification of molecular compartments and genetic circuitry in the developing mammalian kidney

    Article • Development, April 2012, The Company of Biologists

    Philip Machanick

  9. MEME-ChIP: motif analysis of large DNA datasets

    Article • Bioinformatics, April 2011, Oxford University Press (OUP)

    Philip Machanick

  10. Computer-based devices are not just about software but about sensing what is around them.

    Article • January 2011, ACM (Association for Computing Machinery)

    Philip Machanick

  11. The value of position-specific priors in motif discovery using MEME

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Philip Machanick

  12. Analysis of Kernel Effects on Optimisation Mismatch in Cache Reconfiguration

    Article • August 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Philip Machanick

  13. Dynamic Cache Switching in Reconfigurable Embedded Systems

    Article • August 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Philip Machanick

  14. Teaching Java backwards

    Article • Computers & Education, April 2007, Elsevier

    Philip Machanick

  15. How to understand computer science education as more than cognitive skills

    Article • Computer Science Education, March 2007, Taylor & Francis

    Philip Machanick

  16. Design principles for a virtual multiprocessor

    Article • January 2007, ACM (Association for Computing Machinery)

    Philip Machanick

  17. SMP-SoC is the answer if you ask the right questions

    Article • January 2006, ACM (Association for Computing Machinery)

    Philip Machanick

  18. SecureTorrent: A Security Framework for File Swarming

    Article • January 2006, Springer Science + Business Media

    Philip Machanick

  19. The Value of a Small Microkernel for Dreamy Memory and the RAMpage Memory Hierarchy

    Article • Journal of Computer Science and Technology, September 2005, Springer Science + Business Media

    Philip Machanick

  20. A distributed systems approach to secure Internet mail

    Article • Computers & Security, September 2005, Elsevier

    Philip Machanick

  21. Initial Experiences with Dreamy Memory and the RAMpage Memory Hierarchy

    Article • January 2004, Springer Science + Business Media

    Philip Machanick

  22. Principles versus artifacts in computer science curriculum design

    Article • Computers & Education, September 2003, Elsevier

    Philip Machanick

  23. L1 Cache and TLB Enhancements to the RAMpage Memory Hierarchy

    Article • January 2003, Springer Science + Business Media

    Philip Machanick

  24. Latency Improvement in Virtual Multicasting

    Article • January 2003, Springer Science + Business Media

    Philip Machanick

  25. Programming early considered harmful

    Article • ACM SIGCSE Bulletin, March 2001, ACM (Association for Computing Machinery)

    Philip Machanick

  26. Programming early considered harmful

    Article • January 2001, ACM (Association for Computing Machinery)

    Philip Machanick

  27. Curriculum 2020

    Article • January 2000, Springer Science + Business Media

    Philip Machanick

  28. Correction to RAMpage ASPOLOS paper

    Article • ACM SIGARCH Computer Architecture News, September 1999, ACM (Association for Computing Machinery)

    Philip Machanick

  29. Streaming vs.latency in information mass-transit

    Article • ACM SIGARCH Computer Architecture News, December 1998, ACM (Association for Computing Machinery)

    Philip Machanick

  30. Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hierarchy

    Article • ACM SIGOPS Operating Systems Review, December 1998, ACM (Association for Computing Machinery)

    Philip Machanick

  31. Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hierarchy

    Article • ACM SIGPLAN Notices, November 1998, ACM (Association for Computing Machinery)

    Philip Machanick

  32. The abstraction-first approach to data abstraction and algorithms

    Article • Computers & Education, September 1998, Elsevier

    Philip Machanick

  33. Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hierarchy

    Article • January 1998, ACM (Association for Computing Machinery)

    Philip Machanick

  34. The case for SRAM main memory

    Article • ACM SIGARCH Computer Architecture News, December 1996, ACM (Association for Computing Machinery)

    Philip Machanick

  35. Restructuring a parallel simulation to improve cache behavior in a shared-memory multiprocessor

    Article • ACM SIGSIM Simulation Digest, July 1993, ACM (Association for Computing Machinery)

    Philip Machanick

  36. Restructuring a parallel simulation to improve cache behavior in a shared-memory multiprocessor

    Article • January 1993, ACM (Association for Computing Machinery)

    Philip Machanick

  37. Introductory readings in expert systems

    Article • Artificial Intelligence, December 1986, Elsevier

    Philip Machanick

  38. Are LR parsers too powerful?

    Article • ACM SIGPLAN Notices, June 1986, ACM (Association for Computing Machinery)

    Philip Machanick

  39. The case for simplified languages

    Article • ACM SIGPLAN Notices, March 1985, ACM (Association for Computing Machinery)

    Philip Machanick

  40. A note on C. S. Wetherell's "Problems with the Ada reference grammar"

    Article • ACM SIGPLAN Notices, May 1983, ACM (Association for Computing Machinery)

    Philip Machanick

  41. The effect of first-level cache improvements on the RAMpage memory hierarchy

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Philip Machanick