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  1. A Genome-Wide Association Study Reveals Region Associated with Seed Protein Content in Cowpea

    Article • Plants, July 2023, MDPI AG

    Dr Ainong Shi

  2. A Genome-Wide Association Study and Genomic Prediction for Fiber and Sucrose Contents in a Mapping Population of LCP 85-384 Sugarcane

    Article • Plants, February 2023, MDPI AG

    Dr Ainong Shi

  3. Identification of a QTL region for ashy stem blight resistance using genome-wide association and linage analysis in common bean recombinant inbred lines derived from BAT 477 and NY6020-4

    Article • Frontiers in Plant Science, November 2022, Frontiers

    Dr Ainong Shi

  4. Waterlogging during the reproductive growth stage causes physiological and biochemical modifications in the leaves of cowpea (Vigna unguiculata L.) genotypes with contrasting tolerance

    Article • Plant Physiology and Biochemistry, November 2022, Elsevier

    Dr Ainong Shi, Bikash Adhikari

  5. Mapping and selection of downy mildew resistance in spinach cv. whale by low coverage whole genome sequencing

    Article • Frontiers in Plant Science, October 2022, Frontiers

    Dr Ainong Shi

  6. Growth and Photosynthetic Responses of Cowpea Genotypes under Waterlogging at the Reproductive Stage

    Article • Plants, September 2022, MDPI AG

    Bikash Adhikari, Dr Ainong Shi

  7. Author Correction: Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions

    Article • Scientific Reports, August 2022, Springer Science + Business Media

    Dr Ainong Shi

  8. Identification of Candidate Genes and Genomic Selection for Seed Protein in Soybean Breeding Pipeline

    Article • Frontiers in Plant Science, June 2022, Frontiers

    Dr Ainong Shi

  9. Insights into nitrogen metabolism in the wild and cultivated lettuce as revealed by transcriptome and weighted gene co-expression network analysis

    Article • Scientific Reports, June 2022, Springer Science + Business Media

    Dr Ainong Shi

  10. Genome-Wide Association Study and Genomic Prediction for Bacterial Wilt Resistance in Common Bean (Phaseolus vulgaris) Core Collection

    Article • Frontiers in Genetics, May 2022, Frontiers

    Dr Ainong Shi

  11. Decades of Genetic Research on Soybean mosaic virus Resistance in Soybean

    Article • Viruses, May 2022, MDPI AG

    Dr Ainong Shi

  12. Transcriptomic and Metabolomic Analysis Provides Insights into the Fruit Quality and Yield Improvement in Tomato under Soilless Substrate-Based Cultivation

    Article • Agronomy, April 2022, MDPI AG

    Dr Ainong Shi

  13. Population Structure and Genetic Diversity Analysis in Sugarcane (Saccharum spp. hybrids) and Six Related Saccharum Species

    Article • Agronomy, February 2022, MDPI AG

    Dr Ainong Shi

  14. Genetic architecture of salt tolerance in a Multi-Parent Advanced Generation Inter-Cross (MAGIC) cowpea population

    Article • BMC Genomics, February 2022, Springer Science + Business Media

    Dr Ainong Shi

  15. Crustacean Meal Elicits Expression of Growth and Defense-Related Genes in Roots of Lettuce and Tomato

    Article • PhytoFrontiers™, February 2022, Scientific Societies

    Dr Ainong Shi

  16. Impact of nutrient solutions under inorganic substrate soilless cultivation on plant growth, fruit yield and quality of tomato

    Article • Technology in Horticulture, January 2022, Maximum Academic Press

    Dr Ainong Shi

  17. Genome-wide association study and genomic prediction of white rust resistance in USDA GRIN spinach germplasm

    Article • Horticulture Research, January 2022, Oxford University Press (OUP)

    Dr Ainong Shi

  18. Resequencing worldwide spinach germplasm for identification of field resistance QTLs to downy mildew and assessment of genomic selection methods

    Article • Horticulture Research, January 2022, Oxford University Press (OUP)

    Dr Ainong Shi

  19. Genetic Diversity, Structure, and Selective Sweeps in Spinacia turkestanica Associated With the Domestication of Cultivated Spinach

    Article • Frontiers in Genetics, December 2021, Frontiers

    Dr Ainong Shi

  20. Varying drought stress induces morpho-physiological changes in cowpea (Vigna unguiculata (L.) genotypes inoculated with Bradyrhizobium japonicum

    Article • Plant Stress, December 2021, Elsevier

    Dr Ainong Shi

  21. Prediction modeling for yield and water-use efficiency in spinach using remote sensing via an unmanned aerial system

    Article • Smart Agricultural Technology, December 2021, Elsevier

    Dr Ainong Shi

  22. Screening of cowpea (Vigna unguiculata (L.) genotypes for waterlogging tolerance using morpho-physiological traits at early growth stage

    Article • Plant Science, November 2021, Elsevier

    Dr Ainong Shi, Bikash Adhikari

  23. Genetic and genomic resources in guar: a review

    Article • Euphytica, October 2021, Springer Science + Business Media

    Dr Ainong Shi

  24. Evaluation of genetic diversity and association mapping for seed weight and size in vegetable soybean germplasm

    Article • Crop Science, August 2021, Wiley

    Dr Ainong Shi

  25. Genome-wide association study and genomic selection for yield and related traits in soybean

    Article • PLoS ONE, August 2021, PLOS

    Dr Ainong Shi

  26. High resolution mapping and candidate gene identification of downy mildew race 16 resistance in spinach

    Article • BMC Genomics, June 2021, Springer Science + Business Media

    Dr Ainong Shi

  27. Evaluation of salt tolerance in cowpea at seedling stage

    Article • Euphytica, May 2021, Springer Science + Business Media

    Dr Ainong Shi

  28. Population genetics and genome‐wide association studies provide insights into the influence of selective breeding on genetic variation in lettuce

    Article • The Plant Genome, February 2021, Wiley

    Dr Ainong Shi

  29. Loci discovery, network-guided approach, and genomic prediction for drought tolerance index in a multi-parent advanced generation intercross (MAGIC) cowpea population

    Article • Horticulture Research, February 2021, Oxford University Press (OUP)

    Dr Ainong Shi

  30. Research advances and prospects of spinach breeding, genetics, and genomics

    Article • Vegetable Research, January 2021, Maximum Academic Press

    Dr Ainong Shi

  31. Proteomics Analysis Indicates Greater Abundance of Proteins Involved in Major Metabolic Pathways in Lactuca sativa cv. Salinas than Lactuca serriola Accession US96UC23

    Article • PROTEOMICS, August 2020, Wiley

    Dr Ainong Shi

  32. Genome-wide association study and genomic selection for tolerance of soybean biomass to soybean cyst nematode infestation

    Article • PLoS ONE, July 2020, PLOS

    Dr Ainong Shi

  33. Evaluation of cowpea for drought tolerance at seedling stage

    Article • Euphytica, July 2020, Springer Science + Business Media

    Dr Ainong Shi

  34. Evaluation of Drought Tolerance in Arkansas Cowpea Lines at Seedling Stage

    Article • HortScience, July 2020, American Society for Horticultural Science

    Dr Ainong Shi

  35. Transcriptional analyses of differential cultivars during resistant and susceptible interactions with Peronospora effusa, the causal agent of spinach downy mildew

    Article • Scientific Reports, April 2020, Springer Science + Business Media

    Dr Ainong Shi

  36. Genome-wide identification and expression analysis of the CBF/DREB1 gene family in lettuce

    Article • Scientific Reports, March 2020, Springer Science + Business Media

    Dr Ainong Shi

  37. Transcript profiling for regulation of sweet potato skin color in Sushu8 and its mutant Zhengshu20

    Article • Plant Physiology and Biochemistry, March 2020, Elsevier

    Dr Ainong Shi

  38. Genetic diversity of the spinach downy mildew pathogen based on hierarchical sampling

    Article • February 2020, Cold Spring Harbor Laboratory Press

    Dr Ainong Shi

  39. Genome-wide association study and genomic selection for plant height, maturity, seed weight, and yield in soybean

    Article • January 2020, Research Square

    Dr Ainong Shi

  40. Effects of Low Temperature and Low Light on Physiology of Tomato Seedlings

    Article • American Journal of Plant Sciences, January 2020, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  41. Genome-wide association study and genomic selection for soybean chlorophyll content associated with soybean cyst nematode tolerance

    Article • BMC Genomics, November 2019, Springer Science + Business Media

    Dr Ainong Shi

  42. The future of legume genetic data resources: Challenges, opportunities, and priorities

    Article • Legume Science, November 2019, Wiley

    Dr Ainong Shi

  43. Genome-wide association study and genomic selection for plant height, maturity, seed weight, and yield in soybean

    Article • November 2019, Research Square

    Dr Ainong Shi

  44. Genome Wide Association Study and Genomic Selection of Amino Acid Concentrations in Soybean Seeds

    Article • Frontiers in Plant Science, November 2019, Frontiers

    Dr Ainong Shi

  45. Change in Chlorophyll Content Over Time Well-differentiated Salt-tolerant, Moderately Salt-tolerant, and Salt-susceptible Cowpea Genotypes

    Article • HortScience, September 2019, American Society for Horticultural Science

    Dr Ainong Shi

  46. Genetic Diversity Analysis of Olive Germplasm (Olea europaea L.) With Genotyping-by-Sequencing Technology

    Article • Frontiers in Genetics, August 2019, Frontiers

    Dr Ainong Shi

  47. A Simple and Cost-effective Approach for Salt Tolerance Evaluation in Cowpea (Vigna unguiculata) Seedlings

    Article • HortScience, August 2019, American Society for Horticultural Science

    Dr Ainong Shi

  48. Quality Control Techniques and Related Factors for Hydroponic Leafy Vegetables

    Article • HortScience, August 2019, American Society for Horticultural Science

    Dr Ainong Shi

  49. Evaluation of Seed Protein Content in USDA Cowpea Germplasm

    Article • HortScience, May 2019, American Society for Horticultural Science

    Dr Ainong Shi

  50. Spinach Downy Mildew: Advances in Our Understanding of the Disease Cycle and Prospects for Disease Management

    Article • Plant Disease, April 2019, Scientific Societies

    Professor Krishna V Subbarao, Dr Ainong Shi

  51. Seedling salt tolerance for above ground-related traits in cowpea (Vigna unguiculata (L.) Walp)

    Article • Euphytica, February 2019, Springer Science + Business Media

    Dr Ainong Shi

  52. Investigation on Various Aboveground Traits to Identify Drought Tolerance in Cowpea Seedlings

    Article • HortScience, December 2018, American Society for Horticultural Science

    Dr Ainong Shi

  53. Development of molecular markers linked to three spinach downy mildew resistance loci

    Article • Euphytica, September 2018, Springer Science + Business Media

    Dr Ainong Shi

  54. Population structure analysis and association mapping for iron deficiency chlorosis in worldwide cowpea (Vigna unguiculata (L.) Walp) germplasm

    Article • Euphytica, May 2018, Springer Science + Business Media

    Dr Ainong Shi

  55. Identification of the pathogen Podosphaera erigerontis-canadensis causing powdery mildew disease on dandelion (Taraxacum officinale) in US Arkansas state

    Article • Australasian Plant Disease Notes, April 2018, Springer Science + Business Media

    Dr Ainong Shi

  56. Genome-Wide Identification, Classification and Evolutionary Expansion of KNOX Gene Family in Rice (<i>Oryza sativa</i>) and <i>Populus</i> (<i>Populustrichocarpa</i>)

    Article • American Journal of Plant Sciences, January 2018, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  57. Screening of Seed Soluble Sugar Content in Cowpea (<i>Vigna unguiculata</i> (L.) Walp)

    Article • American Journal of Plant Sciences, January 2018, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  58. Genetic differentiation and diversity upon genotype and phenotype in cowpea (Vigna unguiculata L. Walp.)

    Article • Euphytica, December 2017, Springer Science + Business Media

    Dr Ainong Shi

  59. Genetic diversity and population structure analysis of spinach by single-nucleotide polymorphisms identified through genotyping-by-sequencing

    Article • PLoS ONE, November 2017, PLOS

    Dr Ainong Shi

  60. A SNP-based association analysis for plant growth habit in worldwide cowpea (Vigna unguiculata (L.) Walp) Germplasm

    Article • Euphytica, November 2017, Springer Science + Business Media

    Dr Ainong Shi

  61. iTRAQ protein profile analysis of developmental dynamics in soybean [Glycine max (L.) Merr.] leaves

    Article • PLoS ONE, September 2017, PLOS

    Dr Ainong Shi

  62. Association analysis of salt tolerance in cowpea (Vigna unguiculata (L.) Walp) at germination and seedling stages

    Article • Theoretical and Applied Genetics, September 2017, Springer Science + Business Media

    Dr Ainong Shi

  63. Evaluation of Salt Tolerance at Germination Stage in Cowpea [Vigna unguiculata (L.) Walp]

    Article • HortScience, September 2017, American Society for Horticultural Science

    Dr Ainong Shi

  64. Association mapping revealed SNP markers for adaptation to low phosphorus conditions and rock phosphate response in USDA cowpea (Vigna unguiculata (L.) Walp.) germplasm

    Article • Euphytica, July 2017, Springer Science + Business Media

    Dr Ainong Shi

  65. Genome-wide association study (GWAS) of salt tolerance in worldwide soybean germplasm lines

    Article • Molecular Breeding, March 2017, Springer Science + Business Media

    Dr Ainong Shi

  66. Two Tightly Linked Genes for Soybean Mosaic Virus Resistance in Soybean

    Article • Crop Science, January 2017, Crop Science Society of America

    Dr Ainong Shi

  67. Single nucleotide polymorphism markers for rapid detection of the Rsv4 locus for soybean mosaic virus resistance in diverse germplasm

    Article • Molecular Breeding, January 2017, Springer Science + Business Media

    Dr Ainong Shi

  68. A Rapid Method for Measuring Seed Protein Content in Cowpea (<i>Vigna unguiculata</i> (L.) Walp)

    Article • American Journal of Plant Sciences, January 2017, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  69. Effect of Temperature on Seed Germination in Spinach (Spinacia oleracea)

    Article • HortScience, December 2016, American Society for Horticultural Science

    Dr Ainong Shi

  70. SNP association analysis of resistance to Verticillium wilt (Verticillium dahliae Kleb.) in spinach

    Article • Australian Journal of Crop Science, August 2016, Southern Cross Publishing

    Dr Ainong Shi

  71. Genetic Diversity and Population Structure of Cowpea (Vigna unguiculata L. Walp)

    Article • PLoS ONE, August 2016, PLOS

    Dr Ainong Shi

  72. Genetic diversity and association analysis of leafminer (Liriomyza langei) resistance in spinach (Spinacia oleracea)

    Article • Genome, August 2016, Canadian Science Publishing

    Dr Ainong Shi

  73. Association analysis for oxalate concentration in spinach

    Article • Euphytica, July 2016, Springer Science + Business Media

    Dr Ainong Shi

  74. Population structure analysis and association mapping of seed antioxidant content in USDA cowpea (Vigna unguiculata L. Walp.) core collection using SNPs

    Article • Canadian Journal of Plant Science, June 2016, Canadian Science Publishing

    Dr Ainong Shi

  75. Population Structure and Association Analysis of Bolting, Plant Height, and Leaf Erectness in Spinach

    Article • HortScience, May 2016, American Society for Horticultural Science

    Dr Ainong Shi

  76. Association mapping of leaf traits in spinach (Spinacia oleraceaL.)

    Article • Plant Breeding, April 2016, Wiley

    Dr Ainong Shi

  77. Population Structure of Peronospora effusa in the Southwestern United States

    Article • PLoS ONE, February 2016, PLOS

    Dr Ainong Shi

  78. Association Analysis and Identification of SNP Markers for Stemphylium Leaf Spot (<i>Stemphylium botryosum</i> f. sp. <i>spinacia</i>) Resistance in Spinach (<i>Spinacia oleracea&...

    Article • American Journal of Plant Sciences, January 2016, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  79. Evaluation of Total Seed Protein Content in Eleven Arkansas Cowpea (<i>Vigna unguiculata</i> (L.) Walp.) Lines

    Article • American Journal of Plant Sciences, January 2016, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  80. Identification of Quantitative Trait Loci for Oil Content in Soybean Seed

    Article • Crop Science, January 2015, Crop Science Society of America

    Dr Ainong Shi

  81. Agronomic performance and genetic progress of selected historical soybean varieties in the southern USA

    Article • Plant Breeding, December 2014, Wiley

    Dr Ainong Shi

  82. Recent progress in land remote sensing: algorithms and products

    Article • International Journal of Digital Earth, December 2013, Taylor & Francis

    Dr Ainong Shi

  83. Genetic Analysis of High Sucrose, Low Raffinose, and Low Stachyose Content in V99-5089 Soybean Seeds

    Article • Journal of Crop Improvement, September 2013, Taylor & Francis

    Dr Ainong Shi

  84. Mapping powdery mildew resistance gene in V97-3000 soybean

    Article • Plant Breeding, July 2013, Wiley

    Dr Ainong Shi

  85. Inheritance and Allelic Relationships of Resistance Genes for Soybean mosaic virus in ‘Corsica’ and ‘Beeson’ Soybean

    Article • Crop Science, July 2013, Wiley

    Dr Ainong Shi

  86. Identification of soybean mosaic virus resistance alleles in Jindou 1 soybean

    Article • Euphytica, November 2012, Springer Science + Business Media

    Dr Ainong Shi

  87. Two Novel Alleles at the Rsv 3 Locus for Resistance to Soybean Mosaic Virus in PI 399091 and PI 61947 Soybeans

    Article • Crop Science, November 2012, Wiley

    Dr Ainong Shi

  88. Reactions of Mid-Southern U.S. Soybean Cultivars to and

    Article • Crop Science, January 2012, Crop Science Society of America

    Dr Ainong Shi

  89. Reactions of Commercial Soybean Cultivars from the Mid South to

    Article • Crop Science, January 2012, Crop Science Society of America

    Dr Ainong Shi

  90. Identification of Alternaria alternata as a Causal Agent for Leaf Blight in Syringa Species

    Article • The Plant Pathology Journal, June 2011, Korean Society of Plant Pathology

    Dr Ainong Shi

  91. Identification of molecular markers for Sw-5 gene of tomato spotted wilt virus resistance

    Article • American Journal of Biotechnology and Molecular Sciences, April 2011, Science Hub

    Dr Ainong Shi

  92. Molecular Markers for Tm-2 Alleles of Tomato Mosaic Virus Resistance in Tomato

    Article • American Journal of Plant Sciences, January 2011, Scientific Research Publishing, Inc,

    Dr Ainong Shi

  93. Development of ISSR PCR markers for diversity study in dogwood (Cornus spp.)

    Article • Agriculture and Biology Journal of North America, May 2010, Science Hub

    Dr Ainong Shi

  94. Genetic diversity and association analysis of protein and oil content in food-grade soybeans from Asia and the United States

    Article • Plant Breeding, March 2010, Wiley

    Dr Ainong Shi

  95. Identification of New Alleles for Resistance to Soybean Mosaic Virus in Soybean

    Article • Crop Science, March 2010, Wiley

    Dr Ainong Shi

  96. Seed quality attributes of food-grade soybeans from the U.S. and Asia

    Article • Euphytica, January 2010, Springer Science + Business Media

    Dr Ainong Shi

  97. Differentiation of Two Pathogens of Powdery Mildew Disease in Flowering Dogwood (Cornus florida) by PCR-mediated Method Based on ITS Sequences

    Article • Journal of Phytopathology, May 2009, Wiley

    Dr Ainong Shi

  98. Genetic Variability of Seed Sugar Content in Worldwide Soybean Germplasm Collections

    Article • Crop Science, May 2009, Wiley

    Dr Ainong Shi

  99. Temperature Affects Expression of Symptoms Induced by Soybean Mosaic Virus in Homozygous and Heterozygous Plants

    Article • Journal of Heredity, March 2009, Oxford University Press (OUP)

    Dr Ainong Shi

  100. Sugar Variation in Soybean Seed Assessed with a Rapid Extraction and Quantification Method

    Article • International Journal of Agronomy, January 2009, Hindawi Publishing Corporation

    Dr Ainong Shi

  101. Isolation of Resistance Gene Analogues from Flowering Dogwood (Cornus floridaL.)

    Article • Journal of Phytopathology, December 2008, Wiley

    Dr Ainong Shi

  102. Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed

    Article • Journal of Heredity, November 2008, Oxford University Press (OUP)

    Dr Ainong Shi

  103. Pyramiding multiple genes for resistance to soybean mosaic virus in soybean using molecular markers

    Article • Molecular Breeding, September 2008, Springer Science + Business Media

    Dr Ainong Shi

  104. Interaction between two strains ofSoybean mosaic virusin soybean

    Article • Canadian Journal of Plant Pathology, September 2008, Taylor & Francis

    Dr Ainong Shi

  105. Planting Date and Irrigation Effects on Seed Quality of Early-Maturing Soybean in the Mid-South USA

    Article • Journal of New Seeds, July 2008, Taylor & Francis

    Dr Ainong Shi

  106. Genetic structure and diversity of cultivated soybean (Glycine max (L.) Merr.) landraces in China

    Article • Theoretical and Applied Genetics, June 2008, Springer Science + Business Media

    Dr Marinus J M Smulders, Dr Ainong Shi

  107. Genetic Diversity Among Popular Historical Southern U.S. Soybean Cultivars Using AFLP Markers

    Article • Journal of Crop Improvement, May 2008, Taylor & Francis

    Dr Ainong Shi

  108. Genetic Confirmation of 2 Independent Genes for Resistance to Soybean Mosaic Virus in J05 Soybean Using SSR Markers

    Article • Journal of Heredity, May 2008, Oxford University Press (OUP)

    Dr Ainong Shi

  109. Pyramiding of Soybean Mosaic Virus Resistance Genes by Marker-Assisted Selection

    Article • Crop Science, March 2008, Wiley

    Dr Ainong Shi

  110. Quantitative Trait Loci Mapping of Seed Hardness in Soybean

    Article • Crop Science, January 2008, Crop Science Society of America

    Dr Ainong Shi

  111. A PCR-based Marker for the Locus Conferring Resistance to

    Article • Crop Science, January 2008, Crop Science Society of America

    Dr Ainong Shi

  112. PCR-based markers for detection ofColletotrichum acutatumandC. gloeosporioidesin flowering dogwood (Cornus florida)

    Article • Australasian Plant Pathology, January 2008, Springer Science + Business Media

    Dr Ainong Shi

  113. Erysiphe abbreviata on cherry bark oak—morphology, phylogeny and taxonomy

    Article • Mycologia, September 2007, Taylor & Francis

    Dr Ainong Shi

  114. Perpetuation of Powdery Mildew Infection and Identification ofErysiphe australianaas the Crape Myrtle Pathogen in Mid-Tennessee

    Article • Plant Disease, August 2006, Scientific Societies

    Dr Ainong Shi

  115. Registration of NC96BGTA4, NC96BGTA5, and NC96BGTA6 Wheat Germplasm

    Article • Crop Science, May 1999, Wiley

    Dr Ainong Shi

  116. A Major Gene for Powdery Mildew Resistance Transferred to Common Wheat from Wild Einkorn Wheat

    Article • Phytopathology, February 1998, Scientific Societies

    Dr Ainong Shi