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  1. IL-3-Induced Immediate Expression of c-fos and c-jun Is Modulated by the IKK2-JNK Axis

    Article • Cells, April 2022, MDPI AG

    Prof Hodaka Fujii

  2. enChIP-Seq Analyzer: A Software Program to Analyze and Interpret enChIP-Seq Data for the Detection of Physical Interactions between Genomic Regions

    Article • Genes, March 2022, MDPI AG

    Prof Hodaka Fujii

  3. Oligoribonucleotide interference-PCR: principles and applications

    Article • Biology Methods and Protocols, January 2022, Oxford University Press (OUP)

    Prof Hodaka Fujii

  4. A stem cell marker KLF5 regulates CCAT1 via three-dimensional genome structure in colorectal cancer cells

    Article • British Journal of Cancer, October 2021, Springer Science + Business Media

    Prof Hodaka Fujii

  5. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations

    Article • Communications Biology, August 2021, Springer Science + Business Media

    Prof Hodaka Fujii

  6. MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9 for enChIP analysis

    Article • July 2021, Research Square

    Prof Hodaka Fujii

  7. MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9 for enChIP analysis

    Article • July 2021, Research Square

    Prof Hodaka Fujii

  8. Corrigendum to “Cell type-specific roles of Jak3 in IL-2-induced proliferative signal transduction” [Biochem. Biophys. Res. Commun. 354 (3) (2007) 825–829]

    Article • Biochemical and Biophysical Research Communications, May 2021, Elsevier

    Prof Hodaka Fujii

  9. Locus-Specific Genomic DNA Purification Using the CRISPR System: Methods and Applications

    Article • The CRISPR Journal, April 2021, Mary Ann Liebert Inc

    Prof Hodaka Fujii

  10. MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9 for enChIP analysis

    Article • March 2021, Research Square

    Prof Hodaka Fujii

  11. MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9 for enChIP analysis

    Article • Biology Methods and Protocols, January 2021, Oxford University Press (OUP)

    Prof Hodaka Fujii

  12. Sequence-specific inhibition of reverse transcription by recombinant CRISPR/dCas13a ribonucleoprotein complexes in vitro

    Article • Biology Methods and Protocols, January 2021, Oxford University Press (OUP)

    Prof Hodaka Fujii

  13. pSIR-bsr, a self-inactivating retrovirus vector expressing the blasticidin S-resistance gene

    Article • Biology Methods and Protocols, January 2021, Oxford University Press (OUP)

    Prof Hodaka Fujii

  14. enChIP systems with MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9

    Article • October 2020, Research Square

    Prof Hodaka Fujii

  15. enChIP systems with MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9

    Article • July 2020, Research Square

    Prof Hodaka Fujii

  16. Discrimination of CpG Methylation Status and Nucleotide Differences in Tissue Specimen DNA by Oligoribonucleotide Interference-PCR

    Article • International Journal of Molecular Sciences, July 2020, MDPI AG

    Prof Hodaka Fujii

  17. SAMHD 1‐mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination

    Article • The EMBO Journal, June 2020, EMBO

    Prof Hodaka Fujii

  18. A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by Treg cells

    Article • Nature, May 2020, Springer Science + Business Media

    Prof Hodaka Fujii

  19. enChIP systems with MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9

    Article • November 2019, Research Square

    Prof Hodaka Fujii

  20. Simultaneous Detection of the T790M and L858R Mutations in the EGFR Gene by Oligoribonucleotide Interference-PCR

    Article • International Journal of Molecular Sciences, August 2019, MDPI AG

    Prof Hodaka Fujii

  21. Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice

    Article • PLoS ONE, July 2019, PLOS

    Prof Hodaka Fujii

  22. Purification of specific DNA species using the CRISPR system

    Article • Biology Methods and Protocols, January 2019, Oxford University Press (OUP)

    Prof Hodaka Fujii

  23. A refined two-step oligoribonucleotide interference-PCR method for precise discrimination of nucleotide differences

    Article • Scientific Reports, November 2018, Springer Science + Business Media

    Prof Hodaka Fujii

  24. An enChIP system for the analysis of bacterial genome functions

    Article • BMC Research Notes, June 2018, Springer Science + Business Media

    Prof Hodaka Fujii

  25. Promoter-associated proteins of EPAS1 identified by enChIP-MS – A putative role of HDX as a negative regulator

    Article • Biochemical and Biophysical Research Communications, May 2018, Elsevier

    Prof Hodaka Fujii

  26. Detection of genome-edited cells by oligoribonucleotide interference-PCR

    Article • DNA Research, April 2018, Oxford University Press (OUP)

    Prof Hodaka Fujii

  27. enChIP systems using different CRISPR orthologues and epitope tags

    Article • BMC Research Notes, February 2018, Springer Science + Business Media

    Prof Hodaka Fujii

  28. Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis

    Article • Genes to Cells, February 2018, Wiley

    Prof Hodaka Fujii

  29. Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis

    Article • November 2017, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii

  30. Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line

    Article • DNA Research, June 2017, Oxford University Press (OUP)

    Prof Hodaka Fujii

  31. Identification of physical interactions between genomic regions by enChIP-Seq

    Article • Genes to Cells, May 2017, Wiley

    Prof Hodaka Fujii

  32. The role of platelet and endothelial GARP in thrombosis and hemostasis

    Article • PLoS ONE, March 2017, PLOS

    Prof Hodaka Fujii

  33. Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line

    Article • November 2016, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii

  34. Allele-specific locus binding and genome editing by CRISPR at the p16INK4a locus

    Article • Scientific Reports, July 2016, Springer Science + Business Media

    Prof Hodaka Fujii

  35. in vitro enChIP technology to isolate DNA fragments and chromatin in a sequence-specific manner

    Article • Genes to Cells, February 2016, Wiley

    Prof Hodaka Fujii

  36. Isolation of Specific Genomic Regions and Identification of Associated Molecules by enChIP

    Article • Journal of Visualized Experiments, January 2016, MyJove Corporation

    Prof Hodaka Fujii

  37. Identification of physical interactions between genomic regions by enChIP-Seq

    Article • January 2016, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii

  38. Biochemical Analysis of Genome Functions Using Locus-Specific Chromatin Immunoprecipitation Technologies

    Article • Gene Regulation and Systems Biology, January 2016, SAGE Publications

    Prof Hodaka Fujii

  39. Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP technology using recombinant CRISPR ribonucleoproteins

    Article • November 2015, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii

  40. Applications of Engineered DNA-Binding Molecules Such as TAL Proteins and the CRISPR/Cas System in Biology Research

    Article • International Journal of Molecular Sciences, September 2015, MDPI AG

    Prof Hodaka Fujii

  41. Isolation of Specific Genomic Regions and Identification of Their Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using the CRISPR System and TAL Proteins

    Article • International Journal of Molecular Sciences, September 2015, MDPI AG

    Prof Hodaka Fujii

  42. Identification of Non-Coding RNAs Associated with Telomeres Using a Combination of enChIP and RNA Sequencing

    Article • PLoS ONE, April 2015, PLOS

    Prof Hodaka Fujii

  43. A Critical Role of the Thy28-MYH9 Axis in B Cell-Specific Expression of the Pax5 Gene in Chicken B Cells

    Article • PLoS ONE, January 2015, PLOS

    Prof Hodaka Fujii

  44. Isolation of Specific Genomic Regions and Identification of Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using CRISPR

    Article • January 2015, Springer Science + Business Media

    Prof Hodaka Fujii

  45. Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins

    Article • BMC Molecular Biology, November 2014, Springer Science + Business Media

    Prof Hodaka Fujii

  46. Oligoribonucleotide (ORN) Interference-PCR (ORNi-PCR): A Simple Method for Suppressing PCR Amplification of Specific DNA Sequences Using ORNs

    Article • PLoS ONE, November 2014, PLOS

    Prof Hodaka Fujii

  47. Identification of Proteins Associated with an IFNγ-Responsive Promoter by a Retroviral Expression System for enChIP Using CRISPR

    Article • PLoS ONE, July 2014, PLOS

    Prof Hodaka Fujii

  48. Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins

    Article • June 2014, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii

  49. Identification of Proteins Interacting with Genomic Regions of Interest in vivo Using Engineered DNA-binding Molecule-mediated Chromatin Immunoprecipitation (enChIP)

    Article • BIO-PROTOCOL, January 2014, Bio-Protocol, LLC

    Prof Hodaka Fujii

  50. Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP)

    Article • Scientific Reports, November 2013, Springer Science + Business Media

    Prof Hodaka Fujii

  51. Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR

    Article • Biochemical and Biophysical Research Communications, September 2013, Elsevier

    Prof Hodaka Fujii

  52. Regulation of the Expression of GARP/Latent TGF-β1 Complexes on Mouse T Cells and Their Role in Regulatory T Cell and Th17 Differentiation

    Article • The Journal of Immunology, May 2013, The American Association of Immunologists

    Prof Hodaka Fujii

  53. GARP–TGF-β Complexes Negatively Regulate Regulatory T Cell Development and Maintenance of Peripheral CD4+ T Cells In Vivo

    Article • The Journal of Immunology, April 2013, The American Association of Immunologists

    Prof Hodaka Fujii

  54. Locus-specific biochemical epigenetics/chromatin biochemistry by insertional chromatin immnoprecipitation (iChIP)

    Article • Epigenetics & Chromatin, March 2013, Springer Science + Business Media

    Prof Hodaka Fujii

  55. Locus-Specific Biochemical Epigenetics/Chromatin Biochemistry by Insertional Chromatin Immunoprecipitation

    Article • ISRN Biochemistry, January 2013, Hindawi Publishing Corporation

    Prof Hodaka Fujii

  56. Discovery and characterization of new transcripts from RNA-seq data in mouse CD4+ T cells

    Article • Genomics, November 2012, Elsevier

    Prof Hodaka Fujii

  57. Transcription start sites and usage of the first exon of mouse Foxp3 gene

    Article • Molecular Biology Reports, June 2012, Springer Science + Business Media

    Prof Hodaka Fujii

  58. Apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) is essential for IL-21-induced signal transduction through ERK1/2 pathway

    Article • Biochemical and Biophysical Research Communications, April 2012, Elsevier

    Prof Hodaka Fujii

  59. Direct Identification of Insulator Components by Insertional Chromatin Immunoprecipitation

    Article • PLoS ONE, October 2011, PLOS

    Prof Hodaka Fujii

  60. Species-specific 5′-genomic structure and multiple transcription start sites in the chicken Pax5 gene

    Article • Gene, May 2011, Elsevier

    Prof Hodaka Fujii

  61. Insertional chromatin immunoprecipitation: A method for isolating specific genomic regions

    Article • Journal of Bioscience and Bioengineering, November 2009, Elsevier

    Prof Hodaka Fujii

  62. Novel reporter cell line to analyze cytokine-mediated expression regulation of c-myc gene

    Article • Journal of Bioscience and Bioengineering, November 2009, Elsevier

    Prof Hodaka Fujii

  63. Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells

    Article • Proceedings of the National Academy of Sciences, August 2009, Proceedings of the National Academy of Sciences

    Prof Hodaka Fujii

  64. Regulation of Fas-mediated immune homeostasis by an activation-induced protein, Cyclon

    Article • Blood, June 2009, American Society of Hematology

    Prof Hodaka Fujii

  65. Lack of nuclear translocation of cytoplasmic domains of IL-2/IL-15 receptor subunits

    Article • Cytokine, June 2009, Elsevier

    Prof Hodaka Fujii

  66. Identification of a Regulatory T Cell Specific Cell Surface Molecule that Mediates Suppressive Signals and Induces Foxp3 Expression

    Article • PLoS ONE, July 2008, PLOS

    Prof Hodaka Fujii

  67. Receptor expression is essential for proliferation induced by dimerized Jak kinases

    Article • Biochemical and Biophysical Research Communications, June 2008, Elsevier

    Prof Hodaka Fujii

  68. Cytokine-induced nuclear translocation of signaling proteins and their analysis using the inducible translocation trap system

    Article • Cytokine, March 2008, Elsevier

    Prof Hodaka Fujii

  69. Plasmodium Circumsporozoite Protein Promotes the Development of the Liver Stages of the Parasite

    Article • Cell, November 2007, Elsevier

    Prof Hodaka Fujii

  70. Temporal regulation of Stat5 activity in determination of cell differentiation program

    Article • Biochemical and Biophysical Research Communications, July 2007, Elsevier

    Prof Hodaka Fujii

  71. Regulation of Cell Proliferation by Interleukin-3-induced Nuclear Translocation of Pyruvate Kinase

    Article • Journal of Biological Chemistry, April 2007, American Society for Biochemistry & Molecular Biology (ASBMB)

    Prof Hodaka Fujii

  72. Cell type-specific roles of Jak3 in IL-2-induced proliferative signal transduction

    Article • Biochemical and Biophysical Research Communications, March 2007, Elsevier

    Prof Hodaka Fujii

  73. Redundant promoter elements mediate IL-3-induced expression of a novel cytokine-inducible gene,cyclon

    Article • FEBS Letters, February 2007, Wiley

    Prof Hodaka Fujii

  74. Nuclear translocation of 2-amino-3-ketobutyrate coenzyme A ligase by cold and osmotic stress

    Article • Cell Stress and Chaperones, January 2007, Springer Science + Business Media

    Prof Hodaka Fujii

  75. Mechanisms of Signal Transduction from Receptors of Type I and Type II Cytokines

    Article • Journal of Immunotoxicology, January 2007, Taylor & Francis

    Prof Hodaka Fujii

  76. Regulation of Stat1 protein expression by phenylalanine 172 in the coiled-coil domain

    Article • Biochemical and Biophysical Research Communications, August 2006, Elsevier

    Prof Hodaka Fujii

  77. Inducible Translocation Trap

    Article • Molecular Cell, July 2004, Elsevier

    Prof Hodaka Fujii

  78. Enforced expression of the Ikaros isoform IK5 decreases the numbers of extrathymic intraepithelial lymphocytes and natural killer 1.1+ T cells

    Article • Blood, January 2002, American Society of Hematology

    Prof Hodaka Fujii

  79. Differential requirement of the cytoplasmic subregions of γc chain in T cell development and function

    Article • Proceedings of the National Academy of Sciences, August 2000, Proceedings of the National Academy of Sciences

    Prof Hodaka Fujii

  80. Functional dissection of the cytoplasmic subregions of the IL-2 receptor beta c chain in primary lymphocyte populations

    Article • The EMBO Journal, November 1998, Wiley

    Prof Hodaka Fujii

  81. Pyk2 is a downstream mediator of the IL-2 receptor-coupled Jak signaling pathway

    Article • Genes & Development, March 1998, Cold Spring Harbor Laboratory Press

    Prof Hodaka Fujii