All Stories

  1. treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Dr Thomas Sebastian Benedikt Schmidt

  2. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic strain diversity

    Article • August 2019, Cold Spring Harbor Laboratory Press

    Dr Thomas Sebastian Benedikt Schmidt

  3. Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner

    Article • Journal of Clinical Investigation, May 2019, American Society for Clinical Investigation

    Dr Thomas Sebastian Benedikt Schmidt

  4. Microbial abundance, activity and population genomic profiling with mOTUs2

    Article • Nature Communications, March 2019, Springer Science + Business Media

    Dr Thomas Sebastian Benedikt Schmidt

  5. Extensive transmission of microbes along the gastrointestinal tract

    Article • eLife, February 2019, eLife

    Dr Thomas Sebastian Benedikt Schmidt

  6. Extensive Transmission of Microbes along the Gastrointestinal Tract

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Thomas Sebastian Benedikt Schmidt

  7. Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites

    Article • Microbiome, October 2018, Springer Science + Business Media

    Dr Thomas Sebastian Benedikt Schmidt

  8. Similarity of the dog and human gut microbiomes in gene content and response to diet

    Article • Microbiome, April 2018, Springer Science + Business Media

    Dr Thomas Sebastian Benedikt Schmidt

  9. The Human Gut Microbiome: From Association to Modulation

    Article • Cell, March 2018, Elsevier

    Dr Thomas Sebastian Benedikt Schmidt

  10. Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression

    Article • Scientific Reports, November 2017, Nature

    Dr Thomas Sebastian Benedikt Schmidt

  11. Effects of oral antibiotics and isotretinoin on the murine gut microbiota

    Article • International Journal of Antimicrobial Agents, July 2017, Elsevier

    Dr Thomas Sebastian Benedikt Schmidt

  12. MAPseq: Improved Speed, Accuracy And Consistency In Ribosomal RNA Sequence Analysis

    Article • April 2017, Cold Spring Harbor Laboratory Press

    Dr Thomas Sebastian Benedikt Schmidt

  13. A family of interaction-adjusted indices of community similarity

    Article • The ISME Journal, December 2016, Nature

    Dr Thomas Sebastian Benedikt Schmidt

  14. A Family of Interaction-Adjusted Indices of Community Similarity

    Article • February 2016, Cold Spring Harbor Laboratory Press

    Dr Thomas Sebastian Benedikt Schmidt

  15. Pseudo-transition Analysis Identifies the Key Regulators of Dynamic Metabolic Adaptations from Steady-State Data

    Article • Cell Systems, October 2015, Elsevier

    Dr Thomas Sebastian Benedikt Schmidt

  16. Limits to robustness and reproducibility in the demarcation of operational taxonomic units

    Article • Environmental Microbiology, September 2014, Wiley

    Dr Thomas Sebastian Benedikt Schmidt

  17. Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities

    Article • Biodiversity and Conservation, May 2014, Springer Science + Business Media

    Dr Thomas Sebastian Benedikt Schmidt

  18. Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale

    Article • PLoS Computational Biology, April 2014, PLOS

    Dr Thomas Sebastian Benedikt Schmidt

  19. Microbiota-Derived Hydrogen Fuels Salmonella Typhimurium Invasion of the Gut Ecosystem

    Article • Cell Host & Microbe, December 2013, Elsevier

    Dr Thomas Sebastian Benedikt Schmidt

  20. Grasp Detection from Human ECoG during Natural Reach-to-Grasp Movements

    Article • PLoS ONE, January 2013, PLOS

    Dr Thomas Sebastian Benedikt Schmidt