All Stories

  1. Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics

    Article • Statistical Applications in Genetics and Molecular Biology, December 2019, De Gruyter

    Dr Paul Kirk

  2. A Bioconductor workflow for the Bayesian analysis of spatial proteomics

    Article • F1000Research, April 2019, Faculty of 1000, Ltd.

    Dr Paul Kirk, Lisa Breckels

  3. Multivariate moment closure techniques for stochastic kinetic models

    Article • The Journal of Chemical Physics, September 2015, American Institute of Physics

    Dr Paul Kirk

  4. A Graph Theoretical Approach to Data Fusion

    Article • August 2015, Cold Spring Harbor Laboratory Press

    Dr Paul Kirk

  5. Conditional random matrix ensembles and the stability of dynamical systems

    Article • New Journal of Physics, August 2015, Institute of Physics Publishing

    Dr Paul Kirk

  6. Cellular Population Dynamics Control the Robustness of the Stem Cell Niche

    Article • July 2015, Cold Spring Harbor Laboratory Press

    Dr Paul Kirk

  7. Origins of cell-to-cell variability, kinetic proof-reading and the robustness of MAPK signal transduction

    Article • July 2015, Cold Spring Harbor Laboratory Press

    Dr Paul Kirk

  8. Topological sensitivity analysis for systems biology

    Article • Proceedings of the National Academy of Sciences, December 2014, Proceedings of the National Academy of Sciences

    Dr Paul Kirk

  9. SYSBIONS: nested sampling for systems biology

    Article • Bioinformatics, October 2014, Oxford University Press (OUP)

    Dr Paul Kirk

  10. Bayesian non-parametric approaches to reconstructing oscillatory systems and the Nyquist limit

    Article • Physica A Statistical Mechanics and its Applications, August 2014, Elsevier

    Dr Paul Kirk, Dr Tom Thorne

  11. Model Selection in Systems Biology Depends on Experimental Design

    Article • PLoS Computational Biology, June 2014, PLOS

    Dr Paul Kirk

  12. Derivative processes for modelling metabolic fluxes

    Article • Bioinformatics, February 2014, Oxford University Press (OUP)

    Dr Paul Kirk, Dr Tom Thorne

  13. Balancing the Robustness and Predictive Performance of Biomarkers

    Article • Journal of Computational Biology, December 2013, Mary Ann Liebert Inc

    Dr Paul Kirk

  14. Model selection in systems and synthetic biology

    Article • Current Opinion in Biotechnology, August 2013, Elsevier

    Dr Paul Kirk, Dr Tom Thorne

  15. A general moment expansion method for stochastic kinetic models

    Article • The Journal of Chemical Physics, May 2013, American Institute of Physics

    Dr Paul Kirk

  16. Accelerating Bayesian Hierarchical Clustering of Time Series Data with a Randomised Algorithm

    Article • PLoS ONE, April 2013, PLOS

    Dr Paul Kirk

  17. P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish

    Article • Immunology and Cell Biology, November 2012, Nature

    Dr Paul Kirk

  18. Bayesian correlated clustering to integrate multiple datasets

    Article • Bioinformatics, October 2012, Oxford University Press (OUP)

    Dr Paul Kirk

  19. Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection

    Article • Molecular BioSystems, January 2012, Royal Society of Chemistry

    Dr Paul Kirk

  20. Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes

    Article • Nature Communications, October 2011, Nature

    Dr Paul Kirk

  21. Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

    Article • BMC Bioinformatics, January 2011, Springer Science + Business Media

    Dr Paul Kirk

  22. Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis

    Article • Retrovirology, January 2011, Springer Science + Business Media

    Dr Paul Kirk

  23. ABC-SysBio--approximate Bayesian computation in Python with GPU support

    Article • Bioinformatics, June 2010, Oxford University Press (OUP)

    Dr Paul Kirk, Kamil Erguler

  24. Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data

    Article • Bioinformatics, March 2009, Oxford University Press (OUP)

    Dr Paul Kirk

  25. Parameter Inference for Biochemical Systems that Undergo a Hopf Bifurcation

    Article • Biophysical Journal, July 2008, Elsevier

    Dr Paul Kirk