All Stories

  1. Structural and genetic analyses reveal the protein SepF as a new membrane anchor for the Z ring

    Article • Proceedings of the National Academy of Sciences, November 2013, Proceedings of the National Academy of Sciences

    Shu Ishikawa

  2. The ResD Response Regulator, through Functional Interaction with NsrR and Fur, Plays Three Distinct Roles in Bacillus subtilis Transcriptional Control

    Article • Journal of Bacteriology, November 2013, ASM Journals

    Shu Ishikawa

  3. High-Resolution Mapping of In vivo Genomic Transcription Factor Binding Sites Using In situ DNase I Footprinting and ChIP-seq

    Article • DNA Research, April 2013, Oxford University Press (OUP)

    Shu Ishikawa

  4. Functions of the Hha and YdgT Proteins in Transcriptional Silencing by the Nucleoid Proteins, H-NS and StpA, in Escherichia coli

    Article • DNA Research, March 2013, Oxford University Press (OUP)

    Shu Ishikawa

  5. Functional Analysis of the Protein Veg, Which Stimulates Biofilm Formation in Bacillus subtilis

    Article • Journal of Bacteriology, February 2013, ASM Journals

    Shu Ishikawa

  6. A widespread family of bacterial cell wall assembly proteins

    Article • The EMBO Journal, September 2011, Springer Science + Business Media

    Shu Ishikawa

  7. Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis

    Article • Nucleic Acids Research, September 2011, Oxford University Press (OUP)

    Shu Ishikawa

  8. Sequence-specific error profile of Illumina sequencers

    Article • Nucleic Acids Research, May 2011, Oxford University Press (OUP)

    Shu Ishikawa

  9. Transcription Factor GreA Contributes to Resolving Promoter-Proximal Pausing of RNA Polymerase in Bacillus subtilis Cells

    Article • Journal of Bacteriology, April 2011, ASM Journals

    Shu Ishikawa

  10. RNA Polymerase Trafficking in Bacillus subtilis Cells

    Article • Journal of Bacteriology, September 2010, ASM Journals

    Shu Ishikawa

  11. Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation

    Article • Nucleic Acids Research, September 2010, Oxford University Press (OUP)

    Shu Ishikawa

  12. Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation

    Article • The EMBO Journal, June 2009, Springer Science + Business Media

    Shu Ishikawa

  13. Differential Binding Profiles of StpA in Wild-Type and hns Mutant Cells: a Comparative Analysis of Cooperative Partners by Chromatin Immunoprecipitation-Microarray Analysis

    Article • Journal of Bacteriology, January 2009, ASM Journals

    Shu Ishikawa

  14. The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils

    Article • Genes & Genetic Systems, January 2008, Genetics Society of Japan

    Shu Ishikawa

  15. Distribution of Stable DnaA-Binding Sites on the Bacillus Subtilis Genome Detected using a Modified ChIP-chip Method

    Article • DNA Research, September 2007, Oxford University Press (OUP)

    Shu Ishikawa

  16. A new FtsZ‐interacting protein, YlmF, complements the activity of FtsA during progression of cell division in Bacillus subtilis

    Article • Molecular Microbiology, May 2006, Wiley

    Shu Ishikawa

  17. Escherichia coli Histone-Like Protein H-NS Preferentially Binds to Horizontally Acquired DNA in Association with RNA Polymerase

    Article • DNA Research, January 2006, Oxford University Press (OUP)

    Shu Ishikawa

  18. Synergistic Regulation of Competence Development in Bacillus subtilis by Two Rap-Phr Systems

    Article • Journal of Bacteriology, July 2005, ASM Journals

    Shu Ishikawa

  19. Biochemical Characterization of Aspartyl Phosphate Phosphatase Interaction with a Phosphorylated Response Regulator and Its Inhibition by a Pentapeptide

    Article • Journal of Biological Chemistry, June 2002, American Society for Biochemistry & Molecular Biology (ASBMB)

    Shu Ishikawa

  20. Production of Long-chain Levan by asacCInsertional Mutant fromBacillus subtilis327UH

    Article • Bioscience Biotechnology and Biochemistry, January 2002, Oxford University Press (OUP)

    Shu Ishikawa

  21. A free terminal carboxylate group is required for PhrA pentapeptide inhibition of RapA phosphatase

    Article • Peptides, October 2001, Elsevier

    Shu Ishikawa

  22. Cloning and expression of two autolysin genes, cwlU and cwlV, which are tandemly arranged on the chromosome of Bacillus polymyxa var. colistinus

    Article • MGG Molecular & General Genetics, December 1999, Springer Science + Business Media

    Shu Ishikawa

  23. Purification and characterization of an autolysin of Bacillus polymyxa var. colistinus which is most active at acidic pH

    Article • Journal of Fermentation and Bioengineering, January 1997, Elsevier

    Shu Ishikawa