All Stories

  1. Microbiota-gut brain axis involvement in neuropsychiatric disorders

    Article • Expert Review of Neurotherapeutics, July 2019, Taylor & Francis

    Professor Marco Carotenuto, Prof Alberto Verrotti, Nicola Segata, Prof Pasquale Striano, Alberto Preda

  2. On the Road to Strain-Resolved Comparative Metagenomics

    Article • mSystems, March 2018, ASM Journals

    Nicola Segata

  3. Draft Genome Sequences of Novel Pseudomonas , Flavobacterium , and Sediminibacterium Species Strains from a Freshwater Ecosystem

    Article • Genome Announcements, February 2018, ASM Journals

    Nicola Segata

  4. Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

    Article • Genome Announcements, November 2017, ASM Journals

    Nicola Segata

  5. Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

    Article • mSystems, January 2017, ASM Journals

    Nicola Segata

  6. Enhanced microbial diversity in the saliva microbiome induced by short-term probiotic intake revealed by 16S rRNA sequencing on the IonTorrent PGM platform

    Article • Journal of Biotechnology, November 2014, Elsevier

    Nicola Segata

  7. Computational meta'omics for microbial community studies

    Article • Molecular Systems Biology, April 2014, EMBO

    Nicola Segata

  8. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

    Article • The ISME Journal, February 2014, Oxford University Press (OUP)

    Nicola Segata

  9. MetaRef: a pan-genomic database for comparative and community microbial genomics

    Article • Nucleic Acids Research, November 2013, Oxford University Press (OUP)

    Nicola Segata

  10. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

    Article • eLife, November 2013, eLife

    Nicola Segata, Dr Curtis Huttenhower

  11. Two-stage microbial community experimental design

    Article • The ISME Journal, August 2013, Oxford University Press (OUP)

    Nicola Segata

  12. PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

    Article • Nature Communications, August 2013, Springer Science + Business Media

    Nicola Segata

  13. Genome Sequence of Pseudomonas aeruginosa PA45, a Highly Virulent Strain Isolated from a Patient with Bloodstream Infection

    Article • Genome Announcements, May 2013, ASM Journals

    Nicola Segata

  14. Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes

    Article • PLoS ONE, February 2013, PLOS

    Nicola Segata

  15. A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets

    Article • PLoS Computational Biology, January 2013, PLOS

    Nicola Segata, Ruth Ley

  16. Biodiversity and functional genomics in the human microbiome

    Article • Trends in Genetics, January 2013, Elsevier

    Nicola Segata

  17. Microbial Co-occurrence Relationships in the Human Microbiome

    Article • PLoS Computational Biology, July 2012, PLOS

    Nicola Segata, Dr. Jacques Izard

  18. Profiling instances in noise reduction

    Article • Knowledge-Based Systems, July 2012, Elsevier

    Nicola Segata

  19. Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

    Article • PLoS Computational Biology, June 2012, PLOS

    Nicola Segata, Professor Patrick D Schloss, Dr. Jacques Izard

  20. A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

    Article • PLoS ONE, June 2012, PLOS

    Nicola Segata

  21. Metagenomic microbial community profiling using unique clade-specific marker genes

    Article • Nature Methods, June 2012, Springer Science + Business Media

    Nicola Segata

  22. Local SVM approaches for fast and accurate classification of remote-sensing images

    Article • International Journal of Remote Sensing, April 2012, Taylor & Francis

    Nicola Segata

  23. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

    Article • Genome Biology, January 2012, Springer Science + Business Media

    Nicola Segata, Dr. Jacques Izard

  24. Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

    Article • PLoS ONE, September 2011, PLOS

    Nicola Segata

  25. The Genome of Th17 Cell-Inducing Segmented Filamentous Bacteria Reveals Extensive Auxotrophy and Adaptations to the Intestinal Environment

    Article • Cell Host & Microbe, September 2011, Elsevier

    Nicola Segata

  26. Host and gut microbiota symbiotic factors: lessons from inflammatory bowel disease and successful symbionts

    Article • Cellular Microbiology, February 2011, Hindawi Publishing Corporation

    Nicola Segata

  27. Metagenomic biomarker discovery and explanation

    Article • Genome Biology, January 2011, Springer Science + Business Media

    Nicola Segata, Dr. Jacques Izard

  28. Operators for transforming kernels into quasi-local kernels that improve SVM accuracy

    Article • Journal of Intelligent Information Systems, September 2010, Springer Science + Business Media

    Nicola Segata

  29. Keyphrases Extraction from Scientific Documents: Improving Machine Learning Approaches with Natural Language Processing

    Article • January 2010, Springer Science + Business Media

    Nicola Segata

  30. Noise reduction for instance-based learning with a local maximal margin approach

    Article • Journal of Intelligent Information Systems, August 2009, Springer Science + Business Media

    Nicola Segata

  31. Fast Local Support Vector Machines for Large Datasets

    Article • January 2009, Springer Science + Business Media

    Nicola Segata

  32. A Scalable Noise Reduction Technique for Large Case-Based Systems

    Article • January 2009, Springer Science + Business Media

    Nicola Segata

  33. Stochastic π-Calculus Modelling of Multisite Phosphorylation Based Signaling: The PHO Pathway in Saccharomyces Cerevisiae

    Article • January 2008, Springer Science + Business Media

    Nicola Segata

  34. A Kalman Filter Based Background Updating Algorithm Robust to Sharp Illumination Changes

    Article • January 2005, Springer Science + Business Media

    Nicola Segata