All Stories

  1. Impact of the Protein Environment on Two-Photon Absorption Cross-Sections of the GFP Chromophore Anion Resolved at the XMCQDPT2 Level of Theory

    Article • International Journal of Molecular Sciences, July 2023, MDPI AG

    Dr Anastasia V. Bochenkova

  2. High-Resolution Spectroscopy and Selective Photoresponse of Cryogenically Cooled Green Fluorescent Protein Chromophore Anions

    Article • The Journal of Physical Chemistry Letters, July 2023, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  3. Zwitterions Functionalized by Optical Cycling Centers: Toward Laser-Coolable Polyatomic Molecular Cations

    Article • The Journal of Physical Chemistry Letters, June 2023, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  4. Accurate Vertical Electron Detachment Energies and Multiphoton Resonant Photoelectron Spectra of Biochromophore Anions in Aqueous Solution

    Article • Journal of Chemical Theory and Computation, May 2023, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  5. CO‐Preserving Photoinduced Transfer of Cymantrenyl Moiety: a Tandem Experimental and Computational Investigation

    Article • Chemistry - A European Journal, April 2023, Wiley

    Dr Anastasia V. Bochenkova

  6. Calculating Vertical Ionization Energies of Hydrated Biological Chromophores Based on Multiconfigurational Perturbation Theory

    Article • Russian Journal of Physical Chemistry A, April 2023, Pleiades Publishing Ltd

    Dr Anastasia V. Bochenkova

  7. Wavelength dependent mechanism of phenolate photooxidation in aqueous solution

    Article • Chemical Science, January 2023, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  8. Multiconfigurational Methods Including XMCQDPT2 Theory for Excited States of Light-Sensitive Biosystems

    Article • January 2023, Elsevier

    Dr Anastasia V. Bochenkova

  9. Fluorescent 2‐Hydroxy‐3‐(pyridin‐2‐yl)‐4H‐quinolizin‐4‐ones through Dimerization of Pyridineacetic Acids

    Article • European Journal of Organic Chemistry, August 2022, Wiley

    Dr Anastasia V. Bochenkova

  10. Action-Absorption Spectroscopy at the Band Origin of the Deprotonated Green Fluorescent Protein Chromophore In Vacuo

    Article • The Journal of Physical Chemistry Letters, July 2022, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  11. Protein Mobility Measurements through Oxidative Green-to-Red Photoconversion of EGFP

    Article • The Journal of Physical Chemistry B, June 2022, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  12. On the temperature of large biomolecules in ion-storage rings

    Article • The European Physical Journal D, May 2022, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  13. Liquid-microjet photoelectron spectroscopy of the green fluorescent protein chromophore

    Article • Nature Communications, January 2022, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  14. Light Driven Ultrafast Bioinspired Molecular Motors: Steering and Accelerating Photoisomerization Dynamics of Retinal

    Article • Journal of the American Chemical Society, December 2021, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  15. Designing Red-Shifted Molecular Emitters Based on the Annulated Locked GFP Chromophore Derivatives

    Article • International Journal of Molecular Sciences, December 2021, MDPI AG

    Dr Anastasia V. Bochenkova

  16. Role of the Protein Environment in Photoisomerization of Type I and Type II Rhodopsins: a Theoretical Perspective

    Article • Moscow University Chemistry Bulletin, November 2021, Allerton Press

    Dr Anastasia V. Bochenkova

  17. Insights into the Early-Time Excited-State Dynamics of Structurally Inhomogeneous Rhodopsin KR2

    Article • The Journal of Physical Chemistry Letters, September 2021, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  18. Controlling Light‐Induced Proton Transfer from the GFP Chromophore

    Article • ChemPhysChem, May 2021, Wiley

    Dr Anastasia V. Bochenkova

  19. Controlling Light‐Induced Proton Transfer from the GFP Chromophore

    Article • ChemPhysChem, March 2021, Wiley

    Dr Anastasia V. Bochenkova

  20. A photoelectron imaging study of the deprotonated GFP chromophore anion and RNA fluorescent tags

    Article • Physical Chemistry Chemical Physics, January 2021, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  21. Plasmon-Enhanced Fluorescence of EGFP on Short-Range Ordered Ag Nanohole Arrays

    Article • Nanomaterials, December 2020, MDPI AG

    Dr Anastasia V. Bochenkova

  22. A General Mechanism of Green-to-Red Photoconversions of GFP

    Article • Frontiers in Molecular Biosciences, July 2020, Frontiers

    Dr Anastasia V. Bochenkova

  23. Mode-Specific Vibrational Autodetachment Following Excitation of Electronic Resonances by Electrons and Photons

    Article • Physical Review Letters, May 2020, American Physical Society (APS)

    Dr Anastasia V. Bochenkova

  24. Potential functions of internal rotation of the methacryloyl fluoride molecule in the ground (S0) and excited (S1) electronic states

    Article • Journal of Molecular Structure, April 2019, Elsevier

    Dr Anastasia V. Bochenkova

  25. Intrinsic photoisomerization dynamics of protonated Schiff-base retinal

    Article • Nature Communications, March 2019, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  26. Excited-state locked amino analogues of the green fluorescent protein chromophore with a giant Stokes shift

    Article • RSC Advances, January 2019, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  27. Electronic structure of the para-dinitrobenzene radical anion: a combined 2D photoelectron imaging and computational study

    Article • Physical Chemistry Chemical Physics, January 2018, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  28. The UV-visible action-absorption spectrum of all-trans and 11-cis protonated Schiff base retinal in the gas phase

    Article • Physical Chemistry Chemical Physics, January 2018, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  29. Origin of the Intrinsic Fluorescence of the Green Fluorescent Protein

    Article • Journal of the American Chemical Society, June 2017, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  30. Mechanism of resonant electron emission from the deprotonated GFP chromophore and its biomimetics

    Article • Chemical Science, January 2017, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  31. Decoupling Electronic versus Nuclear Photoresponse of Isolated Green Fluorescent Protein Chromophores Using Short Laser Pulses

    Article • Physical Review Letters, December 2016, American Physical Society (APS)

    Dr Anastasia V. Bochenkova

  32. A PYP chromophore acts as a ‘photoacid’ in an isolated hydrogen bonded complex

    Article • Physical Chemistry Chemical Physics, January 2016, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  33. Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

    Article • Journal of Physics Conference Series, September 2015, Institute of Physics Publishing

    Dr Anastasia V. Bochenkova

  34. Frontispiz: Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

    Article • Angewandte Chemie, April 2015, Wiley

    Dr Anastasia V. Bochenkova

  35. Frontispiece: Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

    Article • Angewandte Chemie International Edition, April 2015, Wiley

    Dr Anastasia V. Bochenkova

  36. Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

    Article • Angewandte Chemie, March 2015, Wiley

    Dr Anastasia V. Bochenkova

  37. Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore

    Article • Angewandte Chemie International Edition, March 2015, Wiley

    Dr Anastasia V. Bochenkova

  38. Blue Fluorescent Protein mKalama1

    Article • February 2015, Protein Data Bank, Rutgers University

    Dr Anastasia V. Bochenkova

  39. Hidden photoinduced reactivity of the blue fluorescent protein mKalama1

    Article • Physical Chemistry Chemical Physics, January 2015, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  40. How far can a single hydrogen bond tune the spectral properties of the GFP chromophore?

    Article • Physical Chemistry Chemical Physics, January 2015, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova, Lars Henrik Andersen

  41. UV Excited-State Photoresponse of Biochromophore Negative Ions

    Article • Angewandte Chemie, July 2014, Wiley

    Dr Anastasia V. Bochenkova

  42. UV Excited-State Photoresponse of Biochromophore Negative Ions

    Article • Angewandte Chemie International Edition, July 2014, Wiley

    Dr Anastasia V. Bochenkova

  43. Photoresponse of the protonated Schiff-base retinal chromophore in the gas phase

    Article • Physical Chemistry Chemical Physics, January 2013, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova, Lars Henrik Andersen

  44. Ultrafast dual photoresponse of isolated biological chromophores: link to the photoinduced mode-specific non-adiabatic dynamics in proteins

    Article • Faraday Discussions, January 2013, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  45. Photo-initiated Dynamics and Spectroscopy of the Deprotonated Green Fluorescent Protein Chromophore

    Article • January 2013, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  46. Direct and Indirect Electron Emission from the Green Fluorescent Protein Chromophore

    Article • Physical Review Letters, September 2012, American Physical Society (APS)

    Dr Anastasia V. Bochenkova

  47. Probing the Barrier for Internal Rotation of the Retinal Chromophore

    Article • Angewandte Chemie, July 2012, Wiley

    Dr Anastasia V. Bochenkova

  48. Probing the Barrier for Internal Rotation of the Retinal Chromophore

    Article • Angewandte Chemie International Edition, July 2012, Wiley

    Dr Anastasia V. Bochenkova

  49. Photodissociation pathways and lifetimes of protonated peptides and their dimers

    Article • The Journal of Chemical Physics, January 2012, American Institute of Physics

    Dr Anastasia V. Bochenkova

  50. The origin of radiationless conversion of the excited state in the kindling fluorescent protein (KFP): femtosecond studies and quantum modeling

    Article • Laser Physics Letters, April 2011, Institute of Physics Publishing

    Dr Anastasia V. Bochenkova

  51. Gas Phase Absorption Studies of Photoactive Yellow Protein Chromophore Derivatives

    Article • The Journal of Physical Chemistry A, August 2009, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  52. Modeling reaction routes from rhodopsin to bathorhodopsin

    Article • Proteins Structure Function and Bioinformatics, August 2009, Wiley

    Dr Anastasia V. Bochenkova

  53. HArF in Solid Argon Revisited: Transition from Unstable to Stable Configuration†

    Article • The Journal of Physical Chemistry A, July 2009, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  54. Photoabsorption studies of neutral green fluorescent protein model chromophores in vacuo

    Article • Physical Chemistry Chemical Physics, January 2009, Royal Society of Chemistry

    Dr Anastasia V. Bochenkova

  55. Modeling of the structure and electronic spectra of green fluorescent protein chromophore

    Article • Russian Journal of Physical Chemistry B, October 2008, Pleiades Publishing Ltd

    Dr Anastasia V. Bochenkova

  56. Modeling Photoabsorption of the asFP595 Chromophore

    Article • The Journal of Physical Chemistry A, September 2008, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  57. The photophysics of isolated protein chromophores

    Article • The European Physical Journal D, July 2008, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  58. Characterization of a complete cycle of acetylcholinesterase catalysis by ab initio QM/MM modeling

    Article • Journal of Molecular Modeling, March 2008, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  59. Hindered rotation of HArF in solid argon: Infrared spectroscopy and a theoretical model

    Article • Physical Review B, March 2008, American Physical Society (APS)

    Dr Anastasia V. Bochenkova

  60. Computational approaches in modeling spectra of biological chromophores

    Article • February 2008, SPIE

    Dr Anastasia V. Bochenkova

  61. Investigation of matrix-isolated species: spectroscopy and molecular modelling

    Article • Russian Chemical Reviews, December 2007, Turpion-Moscow Limited

    Dr Anastasia V. Bochenkova

  62. An Opsin Shift in Rhodopsin:  Retinal S0−S1 Excitation in Protein, in Solution, and in the Gas Phase

    Article • Journal of the American Chemical Society, October 2007, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  63. Gas-Phase Spectroscopy of Protonated 3-OH Kynurenine and Argpyrimidine. Comparison of Experimental Results to Theoretical Modeling

    Article • The Journal of Physical Chemistry A, October 2007, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  64. The role of magnesium in hydrolysis of triphosphates in water: Quantum mechanical/molecular mechanical modeling

    Article • Moscow University Chemistry Bulletin, June 2007, Allerton Press

    Dr Anastasia V. Bochenkova

  65. Accurate modeling of the S 0 -S 1 photo-absorption in biological chromophores

    Article • February 2007, SPIE

    Dr Anastasia V. Bochenkova

  66. Remarkably efficient acid generation in chemically amplified resist from quantum chemistry modeling

    Article • Journal of Vacuum Science & Technology B Microelectronics and Nanometer Structures Processing Measurement and Phenomena, January 2007, American Vacuum Society

    Dr Anastasia V. Bochenkova

  67. Impact of Pyrophosphate andO-Ethyl-Substituted Pyrophosphate Groups on DNA Structure

    Article • The Journal of Physical Chemistry, January 2007, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  68. Molecular Modeling the Reaction Mechanism of Serine-Carboxyl Peptidases

    Article • Journal of Chemical Theory and Computation, July 2006, American Chemical Society (ACS)

    Dr Anastasia V. Bochenkova

  69. Hybrid DIM-based QM/MM approach applied to vibrational spectra and trapping site structures of HArF in solid argon

    Article • Chemical Physics Letters, March 2005, Elsevier

    Dr Anastasia V. Bochenkova

  70. QM/MM modeling of the structures and properties of the β-diketonate-based lanthanide complexes

    Article • International Journal of Quantum Chemistry, January 2005, Wiley

    Dr Anastasia V. Bochenkova

  71. Hybrid diatomics-in-molecules-based quantum mechanical/molecular mechanical approach applied to the modeling of structures and spectra of mixed molecular clusters Arn(HCl)m and Arn(HF)m

    Article • The Journal of Chemical Physics, February 2004, American Institute of Physics

    Dr Anastasia V. Bochenkova

  72. Structures of the Peptide–Water Complexes Studied by the Hybrid Quantum Mechanical—Molecular Mechanical (QM/MM) Technique

    Article • Structural Chemistry, February 2004, Springer Science + Business Media

    Dr Anastasia V. Bochenkova

  73. A QM/MM approach with effective fragment potentials applied to the dipeptide–water structures

    Article • Journal of Molecular Structure THEOCHEM, April 2002, Elsevier

    Dr Anastasia V. Bochenkova