All Stories

  1. Analysing Emergent Dynamics of Evolving Computation in 2D Cellular Automata

    Article • January 2019, Springer Science + Business Media

    Professor John S McCaskill

  2. Optomagnetic detection of DNA triplex nanoswitches

    Article • The Analyst, January 2017, Royal Society of Chemistry

    Professor John S McCaskill

  3. Sequence-specific nucleic acid mobility using a reversible block copolymer gel matrix and DNA amphiphiles (lipid-DNA) in capillary and microfluidic electrophoretic separations

    Article • Electrophoresis, September 2015, Wiley

    Professor John S McCaskill

  4. Autonomous lablet locomotion and active docking by sensomotory electroosmotic drive

    Article • July 2015, The MIT Press

    Professor John S McCaskill

  5. DNA-library assembly programmed by on-demand nano-liter droplets from a custom microfluidic chip

    Article • Biomicrofluidics, July 2015, American Institute of Physics

    Professor John S McCaskill

  6. Editorial

    Article • Artificial Life, May 2015, The MIT Press

    Professor John S McCaskill

  7. Emergence of Coding and its Specificity as a Physico-Informatic Problem

    Article • Origins of Life and Evolution of Biospheres, March 2015, Springer Science + Business Media

    Professor John S McCaskill

  8. General-Purpose, Parallel and Reversible Microfluidic Interconnects

    Article • IEEE Transactions on Components Packaging and Manufacturing Technology, March 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Professor John S McCaskill

  9. Corrigendum to: “Field programmable chemistry: Integrated chemical and electronic processing of informational molecules towards electronic chemical cells” [Biosystems, (2012) 109: 2–17]

    Article • Biosystems, February 2015, Elsevier

    Professor John S McCaskill

  10. Electronic pH switching of DNA triplex reactions

    Article • RSC Advances, January 2015, Royal Society of Chemistry

    Professor John S McCaskill

  11. Addressing, amplifying and switching DNAzyme functions by electrochemically-triggered release of metal ions

    Article • Chemical Science, January 2015, Royal Society of Chemistry

    Professor John S McCaskill, Professor Itamar Willner

  12. On demand nanoliter-scale microfluidic droplet generation, injection, and mixing using a passive microfluidic device

    Article • Biomicrofluidics, January 2015, American Institute of Physics

    Professor John S McCaskill

  13. Correction: Electronic pH switching of DNA triplex reactions

    Article • RSC Advances, January 2015, Royal Society of Chemistry

    Professor John S McCaskill

  14. DNA mit 3′-5′-Disulfid-Verknüpfung - schnelle chemische Ligation durch isosteren Ersatz

    Article • Angewandte Chemie, March 2014, Wiley

    Professor John S McCaskill

  15. DNA with 3′-5′-Disulfide Links-Rapid Chemical Ligation through Isosteric Replacement

    Article • Angewandte Chemie International Edition, March 2014, Wiley

    Professor John S McCaskill

  16. Introduction to Recent Developments in Living Technology

    Article • Artificial Life, October 2013, The MIT Press

    Professor John S McCaskill

  17. Field programmable chemistry: Integrated chemical and electronic processing of informational molecules towards electronic chemical cells

    Article • Biosystems, July 2012, Elsevier

    Professor John S McCaskill

  18. Biological and Chemical Information Technologies

    Article • Procedia Computer Science, January 2011, Elsevier

    Professor John S McCaskill

  19. Living Technology: Exploiting Life's Principles in Technology

    Article • Artificial Life, January 2010, The MIT Press

    Professor John S McCaskill

  20. Spatially resolved simulations of membrane reactions and dynamics: Multipolar reaction DPD

    Article • The European Physical Journal E, August 2009, Springer Science + Business Media

    Professor John S McCaskill

  21. Evolutionary Microfluidic Complementation Toward Artificial Cells

    Article • November 2008, The MIT Press

    Professor John S McCaskill

  22. A Roadmap to Protocells

    Article • November 2008, The MIT Press

    Professor John S McCaskill

  23. Electronically programmable membranes for improved biomolecule handling in micro-compartments on-chip

    Article • Chemical Engineering Journal, January 2008, Elsevier

    Professor John S McCaskill

  24. Evolutionary self-organization in complex fluids

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, October 2007, Royal Society Publishing

    Professor John S McCaskill

  25. The Molecular Quasi-Species

    Article • March 2007, Wiley

    Professor John S McCaskill

  26. EVOLVING INDUCTIVE GENERALIZATION VIA GENETIC SELF-ASSEMBLY

    Article • Advances in Complex Systems, March 2006, World Scientific Pub Co Pte Lt

    Professor John S McCaskill

  27. An Electronically Controlled Microfluidic Approach towards Artificial Cells

    Article • Complexus, January 2006, Karger Publishers

    Professor John S McCaskill

  28. Evolutionary Design of a DDPD Model of Ligation

    Article • January 2006, Springer Science + Business Media

    Professor John S McCaskill

  29. Optimization and design of oligonucleotide setup for strand displacement amplification

    Article • Journal of Biochemical and Biophysical Methods, June 2005, Elsevier

    Professor John S McCaskill

  30. Flows in micro fluidic networks: From theory to experiment

    Article • Natural Computing, December 2004, Springer Science + Business Media

    Professor John S McCaskill

  31. Molecular systems on-chip (MSoC) steps forward for programmable biosystems

    Article • July 2004, SPIE

    Professor John S McCaskill

  32. Evolutionary stabilization of generous replicases by complex formation

    Article • The European Physical Journal B, March 2004, Springer Science + Business Media

    Professor John S McCaskill

  33. Folding Stabilizes the Evolution of Catalysts

    Article • Artificial Life, January 2004, The MIT Press

    Professor John S McCaskill

  34. Microfabrication of a BioModule composed of microfluidics and digitally controlled microelectrodes for processing biomolecules

    Article • Smart Materials and Structures, September 2003, Institute of Physics Publishing

    Professor John S McCaskill

  35. Construction of an integrated biomodule composed of microfluidics and digitally controlled microelectrodes for processing biomolecules.

    Article • January 2003, SPIE

    Professor John S McCaskill

  36. Hybrid poly(dimethylsiloxane)-silicon microreactors used for molecular computing

    Article • Smart Materials and Structures, September 2002, Institute of Physics Publishing

    Professor John S McCaskill

  37. Biochemical Amplification Waves in a One-Dimensional Microflow System

    Article • The Journal of Physical Chemistry, May 2002, American Chemical Society (ACS)

    Professor John S McCaskill

  38. DNA Computing in Microreactors

    Article • January 2002, Springer Science + Business Media

    Professor John S McCaskill

  39. Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules

    Article • January 2002, Springer Science + Business Media

    Professor John S McCaskill

  40. Simulation of evolving systems using FPGA technology

    Article • January 2002, Springer Science + Business Media

    Professor John S McCaskill

  41. Advanced Simulation in the Configurable Massively Parallel Hardware MereGen

    Article • January 2002, Springer Science + Business Media

    Professor John S McCaskill

  42. DNA computing in microreactors

    Article • November 2001, SPIE

    Professor John S McCaskill

  43. Parallel random number generator for inexpensive configurable hardware cells

    Article • Computer Physics Communications, November 2001, Elsevier

    Professor John S McCaskill

  44. Evolutionary self-organization of cell-free genetic coding

    Article • Proceedings of the National Academy of Sciences, July 2001, Proceedings of the National Academy of Sciences

    Professor John S McCaskill

  45. Error Threshold for Spatially Resolved Evolution in the Quasispecies Model

    Article • Physical Review Letters, June 2001, American Physical Society (APS)

    Professor John S McCaskill

  46. Optically programming DNA computing in microflow reactors

    Article • Biosystems, February 2001, Elsevier

    Professor John S McCaskill

  47. The Stochastic Evolution of Catalysts in Spatially Resolved Molecular Systems

    Article • Biological Chemistry, January 2001, De Gruyter

    Professor John S McCaskill

  48. Graph replacement chemistry for DNA processing

    Article • January 2001, Springer Science + Business Media

    Professor John S McCaskill

  49. Steady flow micro-reactor module for pipelined DNA computations

    Article • January 2001, Springer Science + Business Media

    Professor John S McCaskill

  50. End-specific covalent photo-dependent immobilisation of synthetic DNA to paramagnetic beads

    Article • Nucleic Acids Research, November 2000, Oxford University Press (OUP)

    Professor John S McCaskill

  51. Open Problems in Artificial Life

    Article • Artificial Life, October 2000, The MIT Press

    Professor John S McCaskill

  52. From Reconfigurability to Evolution in Construction Systems: Spanning the Electronic, Microfluidic and Biomolecular Domains

    Article • January 2000, Springer Science + Business Media

    Professor John S McCaskill

  53. Isothermal Biochemical Amplification in Miniaturized Reactors with Integrated Microvalves

    Article • January 2000, Springer Science + Business Media

    Professor John S McCaskill

  54. Complex patterns in a trans-cooperatively coupled DNA amplification system

    Article • Chemical Engineering Science, January 2000, Elsevier

    Professor John S McCaskill

  55. Complex patterns predicted in an in vitro experimental model system for the evolution of molecular cooperation

    Article • Biophysical Chemistry, June 1999, Elsevier

    Professor John S McCaskill

  56. In vitro evolution of molecular cooperation in CATCH, a cooperatively coupled amplification system

    Article • Chemistry & Biology, December 1998, Elsevier

    Professor John S McCaskill

  57. In vitroDNA-based Predator–Prey System with Oscillatory Kinetics

    Article • The Bulletin of Mathematical Biophysics, March 1998, Springer Science + Business Media

    Professor John S McCaskill

  58. Evolving Reaction-Diffusion Ecosystems with Self-Assembling Structures in Thin Films

    Article • Artificial Life, January 1998, The MIT Press

    Professor John S McCaskill

  59. A Microfow Reactor for Two Dimensional Investigations of In Vitro Amplification Systems

    Article • January 1998, Springer Science + Business Media

    Professor John S McCaskill

  60. Miniaturized Electrocaloric Flow Controller for Analyte Multiplexing and Cell/Particle Sorting

    Article • January 1998, Springer Science + Business Media

    Professor John S McCaskill

  61. Hardware evolution with a massively parallel dynamicaly reconfigurable computer: POLYP

    Article • January 1998, Springer Science + Business Media

    Professor John S McCaskill

  62. Monitoring the amplification of CATCH, a 3SR based cooperatively coupled isothermal amplification system, by fluorimetric methods

    Article • Nucleic Acids Research, November 1997, Oxford University Press (OUP)

    Professor John S McCaskill

  63. Steps towards spatially resolved single molecule detection in solution

    Article • Bioimaging, September 1997, Wiley

    Professor John S McCaskill

  64. Spatially resolved in vitro molecular ecology

    Article • Biophysical Chemistry, June 1997, Elsevier

    Professor John S McCaskill

  65. Single Molecule Detection in Microstructures

    Article • Nucleosides and Nucleotides, May 1997, Taylor & Francis

    Professor John S McCaskill

  66. A molecular predator and its prey: coupled isothermal amplification of nucleic acids

    Article • Chemistry & Biology, January 1997, Elsevier

    Professor John S McCaskill

  67. Cooperative Amplification of Templates by Cross-Hybridization (CATCH)

    Article • European Journal of Biochemistry, January 1997, Wiley

    Professor John S McCaskill

  68. NGEN: A massively parallel reconfigurable computer for biological simulation: Towards a self-organizing computer

    Article • January 1997, Springer Science + Business Media

    Professor John S McCaskill

  69. A cooperatively coupled system based on the 3SR-reaction

    Article • Origins of Life and Evolution of Biospheres, October 1996, Springer Science + Business Media

    Professor John S McCaskill

  70. Monte Carlo approach to tissue-cell populations

    Article • December 1995, American Physical Society (APS)

    Professor John S McCaskill

  71. Detector for two-dimensional time-resolved photon counting

    Article • December 1994, SPIE

    Professor John S McCaskill

  72. NGEN - Configurable computer hardware to simulate long-time self-organization of biopolymers

    Article • Berichte der Bunsengesellschaft für physikalische Chemie, September 1994, Wiley

    Professor John S McCaskill

  73. Fluorescence imaging of evolving RNA in capillaries

    Article • Berichte der Bunsengesellschaft für physikalische Chemie, September 1994, Wiley

    Professor John S McCaskill

  74. Spatially resolved evolution studies in an open reactor

    Article • Berichte der Bunsengesellschaft für physikalische Chemie, September 1994, Wiley

    Professor John S McCaskill

  75. Self-organization of biopolymers. Joint Meeting and International Bunsen Discussion Meeting of the Deutsche Bunsen-Gesellschaft für Physikalische Chemie, Jena, April 10-13th, 1994

    Article • Berichte der Bunsengesellschaft für physikalische Chemie, September 1994, Wiley

    Professor John S McCaskill

  76. Template-directed and Template-free RNA Synthesis by Qβ Replicase

    Article • Journal of Molecular Biology, May 1993, Elsevier

    Professor John S McCaskill

  77. Images of evolution: origin of spontaneous RNA replication waves.

    Article • Proceedings of the National Academy of Sciences, May 1993, Proceedings of the National Academy of Sciences

    Professor John S McCaskill

  78. RNA multi-structure landscapes

    Article • European Biophysics Journal, April 1993, Springer Science + Business Media

    Professor John S McCaskill

  79. Equilibrium Distribution of Secondary Structures for Large RNA

    Article • January 1993, Springer Science + Business Media

    Professor John S McCaskill

  80. Replication of viruses in a growing plaque: a reaction-diffusion model

    Article • Biophysical Journal, June 1992, Elsevier

    Professor John S McCaskill

  81. Evolutionary construction algorithms for topology conserving neural nets

    Article • January 1992, Elsevier

    Professor John S McCaskill

  82. The equilibrium partition function and base pair binding probabilities for RNA secondary structure

    Article • Biopolymers, May 1990, Wiley

    Professor John S McCaskill

  83. Traveling waves of in vitro evolving RNA.

    Article • Proceedings of the National Academy of Sciences, October 1989, Proceedings of the National Academy of Sciences

    Professor John S McCaskill

  84. Evolution im Laboratorium

    Article • Nachrichten aus Chemie Technik und Laboratorium, May 1989, Wiley

    Professor John S McCaskill

  85. Molecular quasi-species

    Article • The Journal of Physical Chemistry, December 1988, American Chemical Society (ACS)

    Professor John S McCaskill

  86. Painlevé solution of the poisson-boltzmann equation for a cylindrical polyelectrolyte in excess salt solution

    Article • Journal of the Chemical Society Faraday Transactions 2 Molecular and Chemical Physics, January 1988, Royal Society of Chemistry

    Professor John S McCaskill

  87. A localization threshold for macromolecular quasispecies from continuously distributed replication rates

    Article • The Journal of Chemical Physics, May 1984, American Institute of Physics

    Professor John S McCaskill

  88. A stochastic theory of macromolecular evolution

    Article • Biological Cybernetics, February 1984, Springer Science + Business Media

    Professor John S McCaskill

  89. The role of bound states in electronic transport

    Article • Journal of Physics and Chemistry of Solids, January 1984, Elsevier

    Professor John S McCaskill

  90. Surface friction constant and range of dynamical interaction between adatoms on metal surfaces

    Article • Surface Science, August 1983, Elsevier

    Professor John S McCaskill

  91. Surface friction constant and range of dynamical interaction between adatoms on metal surfaces

    Article • Surface Science Letters, August 1983, Elsevier

    Professor John S McCaskill

  92. Finite concentration fluorescence quenching in the presence of diffusion

    Article • The Journal of Chemical Physics, June 1983, American Institute of Physics

    Professor John S McCaskill

  93. Review article:electronic transport in short mean-free path liquid metals

    Article • Physics and Chemistry of Liquids, June 1982, Taylor & Francis

    Professor John S McCaskill

  94. On the theory of the Stern–Volmer coefficient for dense fluids

    Article • The Journal of Chemical Physics, June 1981, American Institute of Physics

    Professor John S McCaskill

  95. Fokker-Planck interpretation of picosecond intramolecular dynamics in solutions

    Article • Chemical Physics, December 1979, Elsevier

    Professor John S McCaskill

  96. Competitive adsorption from binary mixtures: Adhesive hard sphere model

    Article • Journal of Colloid and Interface Science, October 1979, Elsevier

    Professor John S McCaskill

  97. A parallel hardware evolvable computer POLYP

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Professor John S McCaskill

  98. Flows in micro fluidic networks: from theory to simulation

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Professor John S McCaskill