All Stories

  1. Genetic redundancy fuels polygenic adaptation in Drosophila
  2. Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations
  3. Genes from scratch – the evolutionary fate of de novo genes
  4. Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa
  5. Temperature Stress Mediates Decanalization and Dominance of Gene Expression in Drosophila melanogaster
  6. The P-element strikes again: the recent invasion of naturalDrosophila simulanspopulations
  7. Genomic Resources Notes Accepted 1 August 2014-30 September 2014
  8. Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving Experimental Drosophila melanogaster Populations
  9. Massive bursts of transposable element activity in Drosophila
  10. Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
  11. Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
  12. Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus
  13. Genome assembly and annotation of a Drosophila simulans strain from Madagascar
  14. A Drosophila laboratory evolution experiment points to low evolutionary potential under increased temperatures likely to be experienced in the future
  15. Host adaptation to viruses relies on few genes with different cross-resistance properties
  16. The life cycle ofDrosophilaorphan genes
  17. Experimental evolution reveals habitat‐specific fitness dynamics among W olbachia clades in D rosophila melanogaster
  18. Intra-Specific Regulatory Variation in Drosophila pseudoobscura
  19. Inference of chromosomal inversion dynamics from P ool‐ S eq data in natural and laboratory populations of D rosophila melanogaster
  20. A Guide for the Design of Evolve and Resequencing Studies
  21. A Perspective on Micro-Evo-Devo: Progress and Potential
  22. Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments
  23. Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus
  24. The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus
  25. VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OFDROSOPHILA MELANOGASTER
  26. DistMap: A Toolkit for Distributed Short Read Mapping on a Hadoop Cluster
  27. Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models
  28. Complete Mitochondrial DNA Sequences of the Threadfin Cichlid (Petrochromis trewavasae) and the Blunthead Cichlid (Tropheus moorii) and Patterns of Mitochondrial Genome Evolution in Cichlid Fishes
  29. A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster
  30. Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster under laboratory conditions
  31. Genetic and developmental analysis of differences in eye and face morphology between Drosophila simulans and Drosophila mauritiana
  32. Allelic imbalance metre ( A llim), a new tool for measuring allele‐specific gene expression with RNA ‐seq data
  33. Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation
  34. Extensive paternal mt DNA leakage in natural populations of D rosophila melanogaster
  35. Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster
  36. Pool‐hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
  37. Estimating Empirical Codon Hidden Markov Models
  38. Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana
  39. Evaluation of Different Reference Based Annotation Strategies Using RNA-Seq – A Case Study in Drososphila pseudoobscura
  40. Genome‐wide patterns of latitudinal differentiation among populations of D rosophila melanogaster from N orth A merica
  41. Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles
  42. Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies
  43. Evolution of Eye Morphology and Rhodopsin Expression in the Drosophila melanogaster Species Subgroup
  44. Two fiber genes of nearly equal lengths are a common and distinctive feature of Fowl adenovirus C members
  45. The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions
  46. Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples
  47. Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
  48. Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle
  49. PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
  50. Developmental Stability: A Major Role for Cyclin G in Drosophila melanogaster
  51. A Comparative Study of the Short Term Cold Resistance Response in Distantly Related Drosophila Species: The Role of regucalcin and Frost
  52. The Genomic Signature of Splicing-Coupled Selection Differs between Long and Short Introns
  53. Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana
  54. Segregating Variation in the Polycomb Group Gene cramped Alters the Effect of Temperature on Multiple Traits
  55. Genealogical lineage sorting leads to significant, but incorrect Bayesian multilocus inference of population structure
  56. Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates
  57. PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
  58. DNA double-strand break repair and the evolution of intron density
  59. CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies
  60. PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila
  61. Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics
  62. Multiple hybridization events between Drosophila simulans and Drosophila mauritiana are supported by mtDNA introgression
  63. Host Range and Specificity of the Drosophila C Virus
  64. Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
  65. The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
  66. A microsatellite linkage map forDrosophila montanashows large variation in recombination rates, and a courtship song trait maps to an area of low recombination
  67. Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
  68. Nonsense-Mediated Decay Enables Intron Gain in Drosophila
  69. Non-random genomic integration - an intrinsic property of retrogenes in Drosophila?
  70. CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies
  71. A Single Amino Acid Replacement in ETC2 Shapes Trichome Patterning in Natural Arabidopsis Populations
  72. Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing
  73. Correction: Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling
  74. PanGEA: Identification of allele specific gene expression using the 454 technology
  75. Detecting Selective Sweeps: A New Approach Based on Hidden Markov Models
  76. Contrasting patterns of natural variation in globalDrosophila melanogasterpopulations
  77. Nonrandom Wolbachia Infection Status of Drosophila melanogaster Strains with Different mtDNA Haplotypes
  78. CLINAL DISTRIBUTION OF A CHROMOSOMAL REARRANGEMENT: A PRECURSOR TO CHROMOSOMAL SPECIATION?
  79. Erratum: Drosophila unleashed: the 12-genome update of the genetic power horse has been released
  80. The impact of shared ancestral variation on hybrid male lethality – a 16 codon indel in the Drosophila simulans Lhr gene
  81. Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites
  82. Male-biased genes are overrepresented among novel Drosophila pseudoobscura sex-biased genes
  83. African Drosophila melanogaster and D. simulans Populations Have Similar Levels of Sequence Variability, Suggesting Comparable Effective Population Sizes
  84. Drosophila unleashed: The 12-genome update of the genetic power horse has been released
  85. Gene expression profiling by massively parallel sequencing
  86. SciRoKo: a new tool for whole genome microsatellite search and investigation
  87. Phenotypic Plasticity in Drosophila Pigmentation Caused by Temperature Sensitivity of a Chromatin Regulator Network
  88. Phylogeographic patterns in Drosophila montana
  89. A distance-based comparison of basic voting rules
  90. Identification of Selective Sweeps Using a Dynamically Adjusted Number of Linked Microsatellites
  91. Silene tatarica microsatellites are frequently located in repetitive DNA
  92. Low abundance of Escherichia coli microsatellites is associated with an extremely low mutation rate
  93. Microsatellite variation and differentiation in African and non-African populations ofDrosophila simulans
  94. Patterns of microsatellite variation through a transition zone of a chromosomal cline in Drosophila americana
  95. No Accelerated Rate of Protein Evolution in Male-Biased Drosophila pseudoobscura Genes
  96. ms2ms.pl: a PERL script for generating microsatellite data
  97. COMMENT: Moving beyond single‐locus studies to characterize hybridization between oaks ( Quercus spp.)
  98. E. coli Microcosms Indicate a Tight Link between Predictability of Ecosystem Dynamics and Diversity
  99. A major bristle QTL from a selected population of Drosophila uncovers the zinc-finger transcription factor Poils-au-dos, a repressor of achaete–scute
  100. Highly Structured Asian Drosophila melanogaster Populations: A New Tool for Hitchhiking Mapping?
  101. Simple Repeats
  102. Isolation and characterization of microsatellite loci from Silene tatarica
  103. Evolution of the spermadhesin gene family
  104. Similar mating and sperm displacement patterns in two highly divergent D. simulans populations from Africa and Europe
  105. Evidence for shared ancestral polymorphism rather than recurrent gene flow at microsatellite loci differentiating two hybridizing oaks (Quercus spp.)
  106. Population structure in African Drosophila melanogaster revealed by microsatellite analysis
  107. Isolation and characterization of microsatellites in Drosophila montana and their cross-species amplification in D. virilis
  108. World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster
  109. A multilocus microsatellite phylogeny of the Drosophila virilis group
  110. Allele excess at neutrally evolving microsatellites and the implications for tests of neutrality
  111. Patterns of Microsatellite Variability in the Drosophila Melanogaster Complex
  112. The evolution of molecular markers — just a matter of fashion?
  113. Patterns of microsatellite variability in the Drosophila melanogaster complex
  114. QTL analysis of variation in male courtship song characters in Drosophila virilis
  115. Characterization of spotted hyena,Crocuta crocutamicrosatellite loci
  116. GENETICS: Where Do Male Genes Live?
  117. Hitchhiking mapping – functional genomics from the population genetics perspective
  118. Towards a molecular characterization of adaptation in local populations
  119. Isolation and characterization of microsatellites in Drosophila virilis and their cross species amplification in members of the D. virilis group
  120. Mitochondrial and nuclear DNA phylogeography of Thymallus spp. (grayling) provides evidence of ice-age mediated environmental perturbations in the world's oldest body of fresh water, Lake Baikal
  121. Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster
  122. Complex patterns of colonization and refugia revealed for European grayling Thymallus thymallus, based on complete sequencing of the mitochondrial DNA control region
  123. Mismatch Repair-Driven Mutational Bias in D. melanogaster
  124. Single nucleotide polymorphisms derived from ancestral populations show no evidence for biased diversity estimates in Drosophila melanogaster
  125. Microsatellite Analysis of Drosophila melanogaster Populations Along a Microclimatic Contrast at Lower Nahel Oren Canyon, Mount Carmel, Israel
  126. Genealogical inference of closely related species based on microsatellites
  127. Trichome Distribution in Arabidopsis thaliana and its Close Relative Arabidopsis lyrata: Molecular Analysis of the Candidate Gene GLABROUS1
  128. Microsatellite variation in natural Drosophila melanogaster populations from New South Wales (Australia) and Tasmania
  129. Haplotype (mtDNA) diversity of brown trout Salmo trutta in tributaries of the Austrian Danube: massive introgression of Atlantic basin fish - by man or nature?
  130. Evolutionary dynamics of microsatellite DNA
  131. Three Divergent rDNA Clusters Predate the Species Divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L
  132. Fitness effects of advantageous mutations in evolving Escherichia coli populations
  133. Microsatellite analysis indicates genetic differentiation of the neo-sex chromosomes in Drosophila americana americana
  134. Polymorphic microsatellite loci in vespertilionid bats isolated from the noctule bat Nyctalus noctula
  135. Polymorphic microsatellite loci in vespertilionid bats isolated from the noctule bat Nyctalus noctula
  136. Drosophila virilis Has Long and Highly Polymorphic Microsatellites
  137. Evolutionary dynamics of microsatellite DNA
  138. Microsatellite Variability Differs Between Dinucleotide Repeat Motifs--Evidence from Drosophila melanogaster
  139. Removal of Microsatellite Interruptions by DNA Replication Slippage: Phylogenetic Evidence from Drosophila
  140. Mitochondrial haplotype diversity among Portuguese brown trout Salmo trutta L. populations: relevance to the post-Pleistocene recolonization of northern Europe
  141. Microsatellite analysis reveals substantial genetic differentiation between contemporary New World and Old World Holstein Friesian populations
  142. Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome
  143. The Use of Imperfect Microsatellites for DNA Fingerprinting and Population Genetics
  144. High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates
  145. A microsatellite-based multilocus phylogeny of the Drosophila melanogaster species complex
  146. Multiple mating in wildDrosophila melanogasterrevisited by microsatellite analysis
  147. Genome evolution: Are microsatellites really simple sequences?
  148. Conservation of locus-specific microsatellite variability across species: a comparison of two Drosophila sibling species, D. melanogaster and D. simulans
  149. Ribosomal DNA Probes and Primers
  150. The use of microsatellites for genetic analysis of natural populations — a critical review
  151. Isolation and characterization of microsatellite loci from Apodemus flavicollis (rodentia, muridae) and Clethrionomys glareolus (rodentia, cricetidae)
  152. M13mtvh: an improved M13 vector for rapid and simple cloning of PCR products
  153. Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus)
  154. Temperature-gradient gel electrophoresis as a screening tool for polymorphisms in multigene families
  155. Simple sequences
  156. Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution
  157. Social structure of pilot whales revealed by analytical DNA profiling
  158. Non-radioactive analysis of multiplexed microsatellite reactions using a direct blotting-sequencing appartatus
  159. Slippage synthesis of simple sequence DNA
  160. Indium desorption during MBE growth of strained InGaAs layers
  161. Isolation of simple-sequence loci for use in polymerase chain reaction-based DNA fingerprinting
  162. Hitchhiking Mapping
  163. A Novel Test Statistic for the Identification of Local Selective Sweeps Based on Microsatellite Gene Diversity