All Stories

  1. Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria

    Article • PLoS ONE, November 2014, PLOS

    Dr Pavel Novichkov

  2. Rex (Encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough Is a Repressor of Sulfate Adenylyl Transferase and Is Regulated by NADH

    Article • Journal of Bacteriology, October 2014, ASM Journals

    Dr Judy D Wall, Dr Pavel Novichkov, Professor Adam P Arkin

  3. Comparative genomics and evolution of regulons of the LacI-family transcription factors

    Article • Frontiers in Microbiology, June 2014, Frontiers

    Dr Pavel Novichkov

  4. Integrated Approach to Reconstruction of Microbial Regulatory Networks

    Article • November 2013, Office of Scientific and Technical Information (OSTI)

    Dr Pavel Novichkov

  5. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria

    Article • Environmental Microbiology, October 2013, Wiley

    Professor Adam P Arkin, Dr Pavel Novichkov

  6. Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

    Article • BMC Genomics, September 2013, Springer Science + Business Media

    Dr Pavel Novichkov

  7. New Family of Tungstate-Responsive Transcriptional Regulators in Sulfate-Reducing Bacteria

    Article • Journal of Bacteriology, August 2013, ASM Journals

    Dr Pavel Novichkov, Professor Adam P Arkin

  8. RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

    Article • BMC Genomics, April 2013, Springer Science + Business Media

    Professor Adam P Arkin, Dr Pavel Novichkov

  9. Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis

    Article • Journal of Bacteriology, March 2013, ASM Journals

    Dr Pavel Novichkov

  10. RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Professor Adam P Arkin, Dr Pavel Novichkov

  11. Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Dr Pavel Novichkov

  12. Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes

    Article • Journal of Bacteriology, October 2012, ASM Journals

    Dr Pavel Novichkov, Professor Adam P Arkin

  13. RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

    Article • Nucleic Acids Research, June 2012, Oxford University Press (OUP)

    Dr Pavel Novichkov

  14. Transcriptional Regulation of Central Carbon and Energy Metabolism in Bacteria by Redox-Responsive Repressor Rex

    Article • Journal of Bacteriology, December 2011, ASM Journals

    Dr Pavel Novichkov

  15. Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator: A CASE STUDY IN SHEWANELLA ONEIDENSIS

    Article • Journal of Biological Chemistry, August 2011, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Pavel Novichkov

  16. Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

    Article • Journal of Bacteriology, April 2011, ASM Journals

    Dr Pavel Novichkov

  17. Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

    Article • BMC Genomics, January 2011, Springer Science + Business Media

    Professor Adam P Arkin, Dr Pavel Novichkov

  18. RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

    Article • Nucleic Acids Research, June 2010, Oxford University Press (OUP)

    Dr Pavel Novichkov

  19. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

    Article • Nucleic Acids Research, November 2009, Oxford University Press (OUP)

    Dr Pavel Novichkov

  20. Gene recognition in eukaryotic DNA by comparison of genomic sequences

    Article • Bioinformatics, November 2001, Oxford University Press (OUP)

    Dr Pavel Novichkov

  21. Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors

    Article • Bioinformatics, January 2001, Oxford University Press (OUP)

    Dr Pavel Novichkov