All Stories

  1. Modeling thermodiffusion in aqueous sodium chloride solutions—Which water model is best?

    Article • The Journal of Chemical Physics, April 2022, American Institute of Physics

    Dr Ben Corry

  2. Enhancing the efficacy of cation-independent mannose 6-phosphate receptor inhibitors by intracellular delivery

    Article • Chemical Communications, January 2016, Royal Society of Chemistry

    Dr Ben Corry

  3. A functional correlate of severity in alternating hemiplegia of childhood

    Article • Neurobiology of Disease, May 2015, Elsevier

    Dr Ben Corry

  4. Modeling Selective Transport and Desalination in Nanotubes

    Article • January 2015, Taylor & Francis

    Dr Ben Corry

  5. Force-Free Transition from Closed to Open MscL: A Molecular Dynamics Study

    Article • Biophysical Journal, January 2015, Elsevier

    Dr Ben Corry

  6. Locating the Route of Entry and Binding Sites of Benzocaine and Phenytoin in a Bacterial Voltage Gated Sodium Channel

    Article • PLoS Computational Biology, July 2014, PLOS

    Dr Ben Corry

  7. Thermostat choice significantly influences water flow rates in molecular dynamics studies of carbon nanotubes

    Article • Microfluidics and Nanofluidics, May 2014, Springer Science + Business Media

    Dr Ben Corry

  8. Binding and Channeling of Alternative Substrates in the Enzyme DmpFG: a Molecular Dynamics Study

    Article • Biophysical Journal, April 2014, Elsevier

    Dr Ben Corry

  9. Investigating the size and dynamics of voltage-gated sodium channel fenestrations

    Article • Channels, March 2014, Taylor & Francis

    Dr Ben Corry

  10. Multi-ion versus single-ion conduction mechanisms can yield current rectification in biological ion channels

    Article • Journal of Biological Physics, January 2014, Springer Science + Business Media

    Dr Ben Corry

  11. What Have We Learnt About the Mechanisms of Rapid Water Transport, Ion Rejection and Selectivity in Nanopores from Molecular Simulation?

    Article • Small, January 2014, Wiley

    Dr Ben Corry

  12. The confined space inside carbon nanotubes can dictate the stereo- and regioselectivity of Diels–Alder reactions

    Article • Physical Chemistry Chemical Physics, January 2014, Royal Society of Chemistry

    Dr Ben Corry

  13. A mechanical nanogate based on a carbon nanotube for reversible control of ion conduction

    Article • Nanoscale, January 2014, Royal Society of Chemistry

    Dr Ben Corry, Professor Jian Zhou

  14. Accounting for dye diffusion and orientation when relating FRET measurements to distances: three simple computational methods

    Article • Physical Chemistry Chemical Physics, January 2014, Royal Society of Chemistry

    Dr Ben Corry

  15. Do bifunctional labels solve the problem of dye diffusion in FRET analysis?

    Article • Physical Chemistry Chemical Physics, January 2014, Royal Society of Chemistry

    Dr Ben Corry

  16. Pharmacological Insights and Quirks of Bacterial Sodium Channels

    Article • January 2014, Springer Science + Business Media

    Dr Ben Corry

  17. Molecular dynamics simulation of the partitioning of benzocaine and phenytoin into a lipid bilayer

    Article • Biophysical Chemistry, January 2014, Elsevier

    Dr Ben Corry

  18. Bioinspired Graphene Nanopores with Voltage-Tunable Ion Selectivity for Na + and K +

    Article • ACS Nano, November 2013, American Chemical Society (ACS)

    Dr Ben Corry, Professor Jian Zhou

  19. Response to Comment on “Experimental Energy Barriers to Anions Transporting through Nanofiltration Membranes”

    Article • Environmental Science & Technology, July 2013, American Chemical Society (ACS)

    Dr Ben Corry

  20. Ice-like Water Structure in Carbon Nanotube (8,8) Induces Cationic Hydration Enhancement

    Article • The Journal of Physical Chemistry C, May 2013, American Chemical Society (ACS)

    Dr Ben Corry, Professor Jian Zhou

  21. An Entropic Mechanism of Generating Selective Ion Binding in Macromolecules

    Article • PLoS Computational Biology, February 2013, PLOS

    Dr Ben Corry

  22. Experimental Energy Barriers to Anions Transporting through Nanofiltration Membranes

    Article • Environmental Science & Technology, February 2013, American Chemical Society (ACS)

    Dr Ben Corry

  23. Quantitative Förster resonance energy transfer efficiency measurements using simultaneous spectral unmixing of excitation and emission spectra

    Article • Journal of Biomedical Optics, February 2013, SPIE

    Dr Ben Corry

  24. Na + /Ca 2+ selectivity in the bacterial voltage-gated sodium channel NavAb

    Article • PeerJ, February 2013, PeerJ

    Dr Ben Corry

  25. How does overcoordination create ion selectivity?

    Article • Biophysical Chemistry, February 2013, Elsevier

    Dr Ben Corry

  26. Simulations of Guest Transport in Clathrates of Dianin’s Compound and Hydroquinone

    Article • Chemistry - A European Journal, January 2013, Wiley

    Professor Mark A Spackman, Dr Ben Corry

  27. Selectivity between Sodium, Calcium and Potassium Ions in Bacterial Sodium and Calcium Channels

    Article • Biophysical Journal, January 2013, Elsevier

    Dr Ben Corry

  28. Structural Investigation of MscL Gating Using Experimental Data and Coarse Grained MD Simulations

    Article • PLoS Computational Biology, September 2012, PLOS

    Dr Ben Corry

  29. The Importance of Dehydration in Determining Ion Transport in Narrow Pores

    Article • Small, March 2012, Wiley

    Dr Ben Corry

  30. Biological Channeling of a Reactive Intermediate in the Bifunctional Enzyme DmpFG

    Article • Biophysical Journal, February 2012, Elsevier

    Dr Ben Corry

  31. Mechanism of Ion Permeation and Selectivity in a Voltage Gated Sodium Channel

    Article • Journal of the American Chemical Society, January 2012, American Chemical Society (ACS)

    Dr Ben Corry

  32. The role of thermodynamics and kinetics in ligand binding to G-quadruplex DNA

    Article • Chemical Communications, January 2012, Royal Society of Chemistry

    Dr Ben Corry

  33. Computational study of methyl group dynamics in the hydroquinoneclathrate of acetonitrile

    Article • Physical Chemistry Chemical Physics, January 2012, Royal Society of Chemistry

    Professor Mark A Spackman, Dr Ben Corry

  34. Quantifying barriers to monovalent anion transport in narrow non-polar pores

    Article • Physical Chemistry Chemical Physics, January 2012, Royal Society of Chemistry

    Dr Ben Corry

  35. Ion Permeation and Selectivity in a Voltage Gated Sodium Channel

    Article • Biophysical Journal, January 2012, Elsevier

    Dr Ben Corry

  36. The Biomolecular Channelling of a Reactive Intermediate

    Article • Biophysical Journal, January 2012, Elsevier

    Dr Ben Corry

  37. ExiFRET: flexible tool for understanding FRET in complex geometries

    Article • Journal of Biomedical Optics, January 2012, SPIE

    Dr Ben Corry

  38. A Model of the Open Pore MscL Based on Experimental Data and Restrained Coarse Grained Simulations

    Article • Biophysical Journal, January 2012, Elsevier

    Dr Ben Corry

  39. Clustering of the Mechanosensitive Ion Channels of Large and Small Conductance MscL and MscS - a FRET-Flim Study

    Article • Biophysical Journal, January 2012, Elsevier

    Dr Ben Corry

  40. Mechanism of Concerted Hydrogen Bond Reorientation in Clathrates of Dianin’s Compound and Hydroquinone

    Article • Journal of the American Chemical Society, November 2011, American Chemical Society (ACS)

    Professor Mark A Spackman, Dr Ben Corry

  41. Testing the Applicability of Nernst-Planck Theory in Ion Channels: Comparisons with Brownian Dynamics Simulations

    Article • PLoS ONE, June 2011, PLOS

    Dr Ben Corry

  42. Testing the Applicability of Nernst-Planck Theory in Ion Channels

    Article • Biophysical Journal, February 2011, Elsevier

    Dr Ben Corry

  43. Modeling of the Open-Channel Structure of Mscl Using Restrained Simulations

    Article • Biophysical Journal, February 2011, Elsevier

    Dr Ben Corry

  44. Mapping the Importance of 4 factors in Creating Monovalent Ion Selectivity in Biological Molecules

    Article • Biophysical Journal, February 2011, Elsevier

    Dr Ben Corry

  45. Anomalous decline of water transport in covalently modified carbon nanotube membranes

    Article • Chemical Communications, January 2011, Royal Society of Chemistry

    Dr Ben Corry

  46. Testing the use of molecular dynamics to simulate fluorophore motions and FRET

    Article • Physical Chemistry Chemical Physics, January 2011, Royal Society of Chemistry

    Dr Ben Corry

  47. Water and ion transport through functionalised carbon nanotubes: implications for desalination technology

    Article • Energy & Environmental Science, January 2011, Royal Society of Chemistry

    Dr Ben Corry

  48. Unraveling the relationship between structure and stabilization of triarylpyridines as G-quadruplex binding ligands

    Article • Organic & Biomolecular Chemistry, January 2011, Royal Society of Chemistry

    Dr Ben Corry

  49. Mapping the Importance of Four Factors in Creating Monovalent Ion Selectivity in Biological Molecules

    Article • Biophysical Journal, January 2011, Elsevier

    Dr Ben Corry

  50. Fluorescent Triphenyl Substituted Maleimide Derivatives: Synthesis, Spectroscopy and Quantum Chemical Calculations

    Article • Journal of Fluorescence, April 2010, Springer Science + Business Media

    Dr Ben Corry

  51. Ion Conduction in Ligand-Gated Ion Channels: Brownian Dynamics Studies of Four Recent Crystal Structures

    Article • Biophysical Journal, February 2010, Elsevier

    Dr Ben Corry

  52. Molecular dynamics simulations of structure and dynamics of organic molecular crystals

    Article • Physical Chemistry Chemical Physics, January 2010, Royal Society of Chemistry

    Professor Mark A Spackman, Dr Ben Corry

  53. Interpreting FRET in Complex Geometries

    Article • Biophysical Journal, January 2010, Elsevier

    Dr Ben Corry

  54. Determination of Fluorophore Orientation and Energy Transfer from MD Simulations

    Article • Biophysical Journal, January 2010, Elsevier

    Dr Ben Corry

  55. Ion Selectivity in the Aspartate Transporter GltPH

    Article • Biophysical Journal, January 2010, Elsevier

    Dr Ben Corry

  56. The Biological Channelling of a Reactive Intermediate

    Article • Biophysical Journal, January 2010, Elsevier

    Dr Ben Corry

  57. Role of acetylcholine receptor domains in ion selectivity

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, July 2009, Elsevier

    Dr Ben Corry

  58. Intrinsic Ion Selectivity of Narrow Hydrophobic Pores

    Article • The Journal of Physical Chemistry, May 2009, American Chemical Society (ACS)

    Dr Ben Corry

  59. Computational study of the transmembrane domain of the acetylcholine receptor

    Article • European Biophysics Journal, May 2009, Springer Science + Business Media

    Dr Ben Corry

  60. Mapping the Common Origins of Ion Selectivity in Biological Molecules

    Article • Biophysical Journal, February 2009, Elsevier

    Dr Ben Corry

  61. Hydrophobic Selectivity And Electrostatic Gating In Narrow Ion Channels

    Article • Biophysical Journal, February 2009, Elsevier

    Dr Ben Corry

  62. A Site-directed FRET Confocal Microscopy Approach for Studying Conformational Changes in the Mechanosensitive Ion-channels, MscL and MscS

    Article • Biophysical Journal, February 2009, Elsevier

    Dr Ben Corry

  63. Open Channel Structure of MscL from Spectroscopy and Simulation

    Article • Biophysical Journal, February 2009, Elsevier

    Dr Ben Corry

  64. Temperature dependence of rotational disorder in a non-standard amino acid from X-ray crystallography and molecular dynamics simulation

    Article • Physical Chemistry Chemical Physics, January 2009, Royal Society of Chemistry

    Dr Ben Corry

  65. Simulation of Structure, Orientation, and Energy Transfer between AlexaFluor Molecules Attached to MscL

    Article • Biophysical Journal, September 2008, Elsevier

    Dr Ben Corry

  66. Bacterial mechanosensitive channels: Experiment and theory

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, September 2008, Elsevier

    Dr Ben Corry

  67. Brownian dynamics study of flux ratios in sodium channels

    Article • European Biophysics Journal, July 2008, Springer Science + Business Media

    Dr Ben Corry

  68. Designing Carbon Nanotube Membranes for Efficient Water Desalination

    Article • The Journal of Physical Chemistry, February 2008, American Chemical Society (ACS)

    Dr Ben Corry

  69. Computational Studies of the Bacterial Mechanosensitive Channels

    Article • January 2008, Springer Science + Business Media

    Dr Ben Corry

  70. The Predominant Role of Coordination Number in Potassium Channel Selectivity

    Article • Biophysical Journal, October 2007, Elsevier

    Dr Ben Corry

  71. Conduction Properties of KcsA Measured Using Brownian Dynamics with Flexible Carbonyl Groups in the Selectivity Filter

    Article • Biophysical Journal, July 2007, Elsevier

    Dr Ben Corry

  72. Redox Control of Calcium Channels: From Mechanisms to Therapeutic Opportunities

    Article • Antioxidants & Redox Signaling, April 2007, Mary Ann Liebert Inc

    Dr Ben Corry

  73. Determination of the Orientational Distribution and Orientation Factor for Transfer between Membrane-Bound Fluorophores using a Confocal Microscope

    Article • Biophysical Journal, August 2006, Elsevier

    Dr Ben Corry

  74. Brownian dynamics investigation into the conductance state of the MscS channel crystal structure

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, June 2006, Elsevier

    Dr Ben Corry

  75. An Energy-Efficient Gating Mechanism in the Acetylcholine Receptor Channel Suggested by Molecular and Brownian Dynamics

    Article • Biophysical Journal, February 2006, Elsevier

    Dr Ben Corry

  76. Understanding ion channel selectivity and gating and their role in cellular signalling

    Article • Molecular BioSystems, January 2006, Royal Society of Chemistry

    Dr Ben Corry

  77. A Flexible Approach to the Calculation of Resonance Energy Transfer Efficiency between Multiple Donors and Acceptors in Complex Geometries

    Article • Biophysical Journal, December 2005, Elsevier

    Dr Ben Corry

  78. Conformational Changes Involved in MscL Channel Gating Measured using FRET Spectroscopy

    Article • Biophysical Journal, December 2005, Elsevier

    Dr Ben Corry

  79. The Fast Gating Mechanism in ClC-0 Channels

    Article • Biophysical Journal, July 2005, Elsevier

    Dr Ben Corry

  80. Electrostatic basis of valence selectivity in cationic channels

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, June 2005, Elsevier

    Dr Ben Corry

  81. A model of sodium channels

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, February 2005, Elsevier

    Dr Ben Corry

  82. Three computational methods for studying permeation, selectivity and dynamics in biological ion channels

    Article • Soft Matter, January 2005, Royal Society of Chemistry

    Dr Ben Corry

  83. Influence of protein flexibility on the electrostatic energy landscape in gramicidin A

    Article • European Biophysics Journal, November 2004, Springer Science + Business Media

    Dr Ben Corry

  84. Theoretical conformation of the closed and open states of the acetylcholine receptor channel

    Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, May 2004, Elsevier

    Dr Ben Corry

  85. Permeation dynamics of chloride ions in the ClC-0 and ClC-1 channels

    Article • Chemical Physics Letters, March 2004, Elsevier

    Dr Ben Corry

  86. Conduction Mechanisms of Chloride Ions in ClC-Type Channels

    Article • Biophysical Journal, February 2004, Elsevier

    Dr Ben Corry

  87. Dielectric Self-Energy in Poisson-Boltzmann and Poisson-Nernst-Planck Models of Ion Channels

    Article • Biophysical Journal, June 2003, Elsevier

    Dr Ben Corry

  88. Continuum Electrostatics Fails to Describe Ion Permeation in the Gramicidin Channel

    Article • Biophysical Journal, September 2002, Elsevier

    Dr Ben Corry

  89. Reservoir Boundaries in Brownian Dynamics Simulations of Ion Channels

    Article • Biophysical Journal, April 2002, Elsevier

    Dr Ben Corry

  90. Mechanisms of Permeation and Selectivity in Calcium Channels

    Article • Biophysical Journal, January 2001, Elsevier

    Dr Ben Corry

  91. Structure and Physiological Role of Ion Channels Studied by Fluorescence Spectroscopy

    Article • October 2000, Wiley

    Dr Ben Corry

  92. Tests of Continuum Theories as Models of Ion Channels. I. Poisson−Boltzmann Theory versus Brownian Dynamics

    Article • Biophysical Journal, May 2000, Elsevier

    Dr Ben Corry

  93. Tests of Continuum Theories as Models of Ion Channels. II. Poisson–Nernst–Planck Theory versus Brownian Dynamics

    Article • Biophysical Journal, May 2000, Elsevier

    Dr Ben Corry

  94. Calcium Channels

    Article • Springer Science + Business Media

    Dr Ben Corry