All Stories

  1. Uniformization techniques for stochastic simulation of chemical reaction networks

    Article • The Journal of Chemical Physics, April 2019, American Institute of Physics

    Dr Ruth Baker

  2. Quantifying transport in crowded biochemical environments

    Article • February 2015, Cold Spring Harbor Laboratory Press

    Dr Ruth Baker

  3. Choosing an Appropriate Modelling Framework for Analysing Multispecies Co-culture Cell Biology Experiments

    Article • Bulletin of Mathematical Biology, December 2014, Springer Science + Business Media

    Dr Ruth Baker

  4. Inference of cell-cell interactions from population density characteristics and cell trajectories on static and growing domains

    Article • November 2014, Cold Spring Harbor Laboratory Press

    Dr Ruth Baker, Dr Christian Adam Yates

  5. Editorial

    Article • Seminars in Cell and Developmental Biology, November 2014, Elsevier

    Dr Ruth Baker

  6. The importance of volume exclusion in modelling cellular migration

    Article • Journal of Mathematical Biology, September 2014, Springer Science + Business Media

    Dr Ruth Baker

  7. Are in vitro estimates of cell diffusivity and cell proliferation rate sensitive to assay geometry?

    Article • Journal of Theoretical Biology, September 2014, Elsevier

    Dr Ruth Baker

  8. Assessing the role of spatial correlations during collective cell spreading

    Article • Scientific Reports, July 2014, Springer Science + Business Media

    Dr Ruth Baker

  9. Comparing methods for modelling spreading cell fronts

    Article • Journal of Theoretical Biology, July 2014, Elsevier

    Dr Ruth Baker

  10. Vertex Models of Epithelial Morphogenesis

    Article • Biophysical Journal, June 2014, Elsevier

    Dr Alexander G Fletcher, Dr Ruth Baker

  11. Modelling collective cell behaviour

    Article • Discrete and Continuous Dynamical Systems, June 2014, American Institute of Mathematical Sciences (AIMS)

    Dr Ruth Baker

  12. Characterizing transport through a crowded environment with different obstacle sizes

    Article • The Journal of Chemical Physics, February 2014, American Institute of Physics

    Dr Ruth Baker

  13. Distinguishing between mean-field, moment dynamics and stochastic descriptions of birth–death–movement processes

    Article • Physica A Statistical Mechanics and its Applications, February 2014, Elsevier

    Dr Ruth Baker

  14. Mathematical modelling of digit specification by a sonic hedgehog gradient

    Article • Developmental Dynamics, November 2013, Wiley

    Dr Ruth Baker

  15. Importance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices

    Article • Physical Review E, November 2013, American Physical Society (APS)

    Dr Ruth Baker, Dr Christian Adam Yates

  16. Incorporating spatial correlations into multispecies mean-field models

    Article • Physical Review E, November 2013, American Physical Society (APS)

    Dr Ruth Baker

  17. Simplified approach for calculating moments of action for linear reaction-diffusion equations

    Article • Physical Review E, November 2013, American Physical Society (APS)

    Dr Ruth Baker

  18. Design and interpretation of cell trajectory assays

    Article • Journal of The Royal Society Interface, August 2013, Royal Society Publishing

    Dr Ruth Baker

  19. Isotropic model for cluster growth on a regular lattice

    Article • Physical Review E, August 2013, American Physical Society (APS)

    Dr Ruth Baker, Dr Christian Adam Yates

  20. Cellular blebs: pressure-driven, axisymmetric, membrane protrusions

    Article • Biomechanics and Modeling in Mechanobiology, July 2013, Springer Science + Business Media

    Dr Ruth Baker

  21. Simplified method for including spatial correlations in mean-field approximations

    Article • Physical Review E, June 2013, American Physical Society (APS)

    Dr Ruth Baker

  22. Noise-induced temporal dynamics in Turing systems

    Article • Physical Review E, April 2013, American Physical Society (APS)

    Dr Ruth Baker

  23. Optimal barrier zones for stopping the invasion of Aedes aegypti mosquitoes via transgenic or sterile insect techniques

    Article • Theoretical Ecology, March 2013, Springer Science + Business Media

    Dr Ruth Baker

  24. Access to enhanced differences in Marcus–Hush and Butler–Volmer electron transfer theories by systematic analysis of higher order AC harmonics

    Article • Physical Chemistry Chemical Physics, January 2013, Royal Society of Chemistry

    alan bond, Dr Ruth Baker

  25. CRITICAL TIMESCALES AND TIME INTERVALS FOR COUPLED LINEAR PROCESSES

    Article • The ANZIAM Journal, January 2013, Cambridge University Press

    Dr Ruth Baker

  26. Modelling Delta-Notch perturbations during zebrafish somitogenesis

    Article • Developmental Biology, January 2013, Elsevier

    Dr Ruth Baker

  27. A Modified Oster--Murray--Harris Mechanical Model of Morphogenesis

    Article • SIAM Journal on Applied Mathematics, January 2013, Society for Industrial & Applied Mathematics (SIAM)

    Dr Ruth Baker

  28. Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies

    Article • BMC Systems Biology, January 2013, Springer Science + Business Media

    Dr Ruth Baker, Associate Professor David Ian Leavesley

  29. Modelling Hair Follicle Growth Dynamics as an Excitable Medium

    Article • PLoS Computational Biology, December 2012, PLOS

    Dr Ruth Baker

  30. Understanding hair follicle cycling: a systems approach

    Article • Current Opinion in Genetics & Development, December 2012, Elsevier

    Dr Ruth Baker

  31. Modelling Cell Migration and Adhesion During Development

    Article • Bulletin of Mathematical Biology, October 2012, Springer Science + Business Media

    Dr Ruth Baker, Dr Christian Adam Yates

  32. Faculty Opinions recommendation of Models of anomalous diffusion in crowded environments.

    Article • October 2012, F1000Research

    Dr Ruth Baker

  33. Faculty Opinions recommendation of Strange kinetics of single molecules in living cells.

    Article • October 2012, F1000Research

    Dr Ruth Baker

  34. Moments of action provide insight into critical times for advection-diffusion-reaction processes

    Article • Physical Review E, September 2012, American Physical Society (APS)

    Dr Ruth Baker

  35. Macroscopic limits of individual-based models for motile cell populations with volume exclusion

    Article • Physical Review E, September 2012, American Physical Society (APS)

    Dr Ruth Baker

  36. Reply to Correspondence: No Oscillations in Real Activator–Inhibitor Systems in Accomplishing Pattern Formation

    Article • Bulletin of Mathematical Biology, August 2012, Springer Science + Business Media

    Dr Ruth Baker

  37. Modelling Oscillator Synchronisation During Vertebrate Axis Segmentation

    Article • August 2012, Springer Science + Business Media

    Dr Ruth Baker

  38. Mean-field descriptions of collective migration with strong adhesion

    Article • Physical Review E, May 2012, American Physical Society (APS)

    Dr Ruth Baker

  39. Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems

    Article • Physical Review E, May 2012, American Physical Society (APS)

    Dr Ruth Baker

  40. Critical time scales for advection-diffusion-reaction processes

    Article • Physical Review E, April 2012, American Physical Society (APS)

    Dr Ruth Baker

  41. Developmental Biology: Mathematical Modelling of Development

    Article • April 2012, Wiley

    Dr Ruth Baker

  42. Mathematical models of morphogen gradients and their effects on gene expression

    Article • Wiley Interdisciplinary Reviews Developmental Biology, April 2012, Wiley

    Dr Ruth Baker

  43. Faculty Opinions recommendation of Complement fragment C3a controls mutual cell attraction during collective cell migration.

    Article • March 2012, F1000Research

    Dr Ruth Baker

  44. Multi-Cellular Rosettes in the Mouse Visceral Endoderm Facilitate the Ordered Migration of Anterior Visceral Endoderm Cells

    Article • PLoS Biology, February 2012, PLOS

    Dr Ruth Baker

  45. The Influence of Receptor-Mediated Interactions on Reaction-Diffusion Mechanisms of Cellular Self-organisation

    Article • Bulletin of Mathematical Biology, November 2011, Springer Science + Business Media

    Dr Ruth Baker

  46. Stochastic reaction and diffusion on growing domains: Understanding the breakdown of robust pattern formation

    Article • Physical Review E, October 2011, American Physical Society (APS)

    Dr Ruth Baker

  47. Influence of stochastic domain growth on pattern nucleation for diffusive systems with internal noise

    Article • Physical Review E, October 2011, American Physical Society (APS)

    Dr Ruth Baker

  48. Incorporating chemical signalling factors into cell-based models of growing epithelial tissues

    Article • Journal of Mathematical Biology, September 2011, Springer Science + Business Media

    Dr Ruth Baker

  49. Distinguishing graded and ultrasensitive signalling cascade kinetics by the shape of morphogen gradients in Drosophila

    Article • Journal of Theoretical Biology, September 2011, Elsevier

    Dr Ruth Baker

  50. Power spectra methods for a stochastic description of diffusion on deterministically growing domains

    Article • Physical Review E, August 2011, American Physical Society (APS)

    Dr Ruth Baker

  51. The clock and wavefront model revisited

    Article • Journal of Theoretical Biology, August 2011, Elsevier

    Dr Ruth Baker

  52. Corrected mean-field models for spatially dependent advection-diffusion-reaction phenomena

    Article • Physical Review E, May 2011, American Physical Society (APS)

    Dr Ruth Baker

  53. Models of collective cell spreading with variable cell aspect ratio: A motivation for degenerate diffusion models

    Article • Physical Review E, February 2011, American Physical Society (APS)

    Dr Ruth Baker

  54. Analysis of stationary droplets in a generic Turing reaction-diffusion system

    Article • Physical Review E, November 2010, American Physical Society (APS)

    Dr Ruth Baker

  55. Correcting mean-field approximations for birth-death-movement processes

    Article • Physical Review E, October 2010, American Physical Society (APS)

    Dr Ruth Baker

  56. A random cell motility gradient downstream of FGF controls elongation of an amniote embryo

    Article • Nature, July 2010, Springer Science + Business Media

    Dr Ruth Baker

  57. Faculty Opinions recommendation of Optimizing chemotaxis by measuring unbound-bound transitions

    Article • April 2010, F1000Research

    Dr Ruth Baker

  58. Faculty Opinions recommendation of Neural crest regionalisation for enteric nervous system formation: implications for Hirschsprung's disease and stem cell therapy.

    Article • April 2010, F1000Research

    Dr Ruth Baker

  59. Faculty Opinions recommendation of Spatio-temporal correlations can drastically change the response of a MAPK pathway.

    Article • April 2010, F1000Research

    Dr Ruth Baker

  60. Faculty Opinions recommendation of Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.

    Article • April 2010, F1000Research

    Dr Ruth Baker

  61. Faculty Opinions recommendation of Morphogen profiles can be optimized to buffer against noise.

    Article • February 2010, F1000Research

    Dr Ruth Baker

  62. From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains

    Article • Bulletin of Mathematical Biology, October 2009, Springer Science + Business Media

    Professor Radek Erban, Dr Ruth Baker, Dr Christian Adam Yates

  63. 03-P009 A random cell motility gradient downstream of FGF controls elongation of amniote embryos

    Article • Mechanisms of Development, August 2009, Elsevier

    Dr Ruth Baker

  64. Modeling the skin pattern of fishes

    Article • Physical Review E, March 2009, American Physical Society (APS)

    Dr Ruth Baker

  65. How can mathematics help us explore vertebrate segmentation?

    Article • HFSP Journal, February 2009, Taylor & Francis

    Dr Ruth Baker

  66. Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies

    Article • The International Journal of Developmental Biology, January 2009, UBC Press

    Dr Ruth Baker

  67. Mathematical Models for Somite Formation

    Article • January 2008, Elsevier

    Dr Ruth Baker

  68. Cyclic dermal BMP signalling regulates stem cell activation during hair regeneration

    Article • Nature, January 2008, Springer Science + Business Media

    Dr Ruth Baker

  69. A mathematical basis for the clock and wavefront model for somitogenesis

    Article • Developmental Biology, June 2007, Elsevier

    Dr Ruth Baker

  70. WITHDRAWN: A mathematical basis for the clock and wavefront model for somitogenesis

    Article • Developmental Biology, April 2007, Elsevier

    Dr Ruth Baker

  71. From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks

    Article • Developmental Dynamics, January 2007, Wiley

    Dr Ruth Baker

  72. Formation of Vertebral Precursors: Past Models and Future Predictions

    Article • Journal of Theoretical Medicine, January 2003, Hindawi Publishing Corporation

    Dr Ruth Baker