All Stories

  1. Increasing Robot Autonomy via Motion Planning and an Augmented Reality Interface

    Article • IEEE Robotics and Automation Letters, April 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  2. Improving the organization and interactivity of metabolic pathfinding with precomputed pathways

    Article • BMC Bioinformatics, January 2020, Springer Science + Business Media

    Dr Mark Moll

  3. A scalable motion planner for high-dimensional kinematic systems

    Article • The International Journal of Robotics Research, December 2019, SAGE Publications

    Professor Lydia E Kavraki, Dr Mark Moll

  4. Exploring implicit spaces for constrained sampling-based planning

    Article • The International Journal of Robotics Research, August 2019, SAGE Publications

    Professor Lydia E Kavraki, Dr Mark Moll

  5. Machine Learning Guided Atom Mapping of Metabolic Reactions

    Article • Journal of Chemical Information and Modeling, December 2018, American Chemical Society (ACS)

    Dr Mark Moll, Professor Lydia E Kavraki

  6. Randomized Physics-Based Motion Planning for Grasping in Cluttered and Uncertain Environments

    Article • IEEE Robotics and Automation Letters, April 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  7. General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept

    Article • Scientific Reports, March 2018, Nature

    Dr Mark Moll

  8. Maintaining and Enhancing Diversity of Sampled Protein Conformations in Robotics-Inspired Methods

    Article • Journal of Computational Biology, January 2018, Mary Ann Liebert Inc

    Dr Mark Moll, Professor Lydia E Kavraki

  9. DINC 2.0: A New Protein–Peptide Docking Webserver Using an Incremental Approach

    Article • Cancer Research, October 2017, American Association for Cancer Research (AACR)

    Dr Mark Moll, Professor Lydia E Kavraki

  10. A review of parameters and heuristics for guiding metabolic pathfinding

    Article • Journal of Cheminformatics, September 2017, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  11. Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data

    Article • Frontiers in Molecular Biosciences, March 2017, Frontiers

    Dr Mark Moll, Professor Lydia E Kavraki

  12. Robonaut 2 and you: Specifying and executing complex operations

    Article • March 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  13. Defining Low-Dimensional Projections to Guide Protein Conformational Sampling

    Article • Journal of Computational Biology, January 2017, Mary Ann Liebert Inc

    Dr Mark Moll, Professor Lydia E Kavraki

  14. Planning feasible and safe paths online for autonomous underwater vehicles in unknown environments

    Article • October 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  15. Structure-guided selection of specificity determining positions in the human Kinome

    Article • BMC Genomics, August 2016, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  16. Special Issue on the 2014 Robotics Science & Systems Conference

    Article • The International Journal of Robotics Research, January 2016, SAGE Publications

    Dr Mark Moll, Professor Lydia E Kavraki

  17. Improving protein conformational sampling by using guiding projections

    Article • November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  18. Benchmarking Motion Planning Algorithms: An Extensible Infrastructure for Analysis and Visualization

    Article • IEEE Robotics & Automation Magazine, September 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  19. Extending the Applicability of POMDP Solutions to Robotic Tasks

    Article • IEEE Transactions on Robotics, August 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  20. A heuristic approach to finding diverse short paths

    Article • May 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  21. Experience-based planning with sparse roadmap spanners

    Article • May 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  22. Asymptotically Optimal Stochastic Motion Planning with Temporal Goals

    Article • January 2015, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  23. Active Planning, Sensing, and Recognition Using a Resource-Constrained Discriminant POMDP

    Article • June 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  24. Fast stochastic motion planning with optimality guarantees using local policy reconfiguration

    Article • May 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  25. SMT-based synthesis of integrated task and motion plans from plan outlines

    Article • May 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  26. Software for project-based learning of robot motion planning

    Article • Computer Science Education, December 2013, Taylor & Francis

    Dr Mark Moll, Professor Lydia E Kavraki

  27. SIMS: A Hybrid Method for Rapid Conformational Analysis

    Article • PLoS ONE, July 2013, PLOS

    Dr Mark Moll, Professor Lydia E Kavraki

  28. Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome

    Article • PLoS Computational Biology, June 2013, PLOS

    Dr Mark Moll, Professor Lydia E Kavraki

  29. Anytime solution optimization for sampling-based motion planning

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  30. Automated model approximation for robotic navigation with POMDPs

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  31. Resolution Independent Density Estimation for motion planning in high-dimensional spaces

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  32. The Open Motion Planning Library

    Article • IEEE Robotics & Automation Magazine, December 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  33. Multi-objective sensor-based replanning for a car-like robot

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  34. Multi-robot target verification with reachability constraints

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  35. On the conformational flexibility of C3b: A molecular insight into activation and transformation of a major complement effector

    Article • Immunobiology, November 2012, Elsevier

    Dr Mark Moll

  36. Safe distributed motion coordination for second-order systems with different planning cycles

    Article • The International Journal of Robotics Research, February 2012, SAGE Publications

    Dr Mark Moll, Professor Lydia E Kavraki

  37. Teaching motion planning concepts to undergraduate students

    Article • October 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  38. The LabelHash Server and Tools for substructure-based functional annotation

    Article • Bioinformatics, June 2011, Oxford University Press (OUP)

    Dr Mark Moll, Professor Lydia E Kavraki

  39. Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  40. The LabelHash algorithm for substructure matching

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  41. Tracing conformational changes in proteins

    Article • BMC Structural Biology, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  42. Tracing conformational changes in proteins

    Article • November 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  43. A statistical model to correct systematic bias introduced by algorithmic thresholds in protein structural comparison algorithms

    Article • November 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  44. LabelHash: A Flexible and Extensible Method for Matching Structural Motifs

    Article • Nature Reports Climate Change, August 2008, Nature

    Dr Mark Moll

  45. LabelHash: A Flexible and Extensible Method for Matching Structural Motifs

    Article • Nature Reports Climate Change, August 2008, Nature

    Dr Mark Moll

  46. Editorial

    Article • The International Journal of Robotics Research, March 2008, SAGE Publications

    Dr Mark Moll

  47. Roadmap Methods for Protein Folding

    Article • January 2008, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  48. Multifunctional behaviors of reconfigurable superbot robots

    Article • October 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  49. Modular Self-Reconfigurable Robot Systems [Grand Challenges of Robotics]

    Article • IEEE Robotics & Automation Magazine, March 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  50. Improving the Prediction of Kinase Binding Affinity Using Homology Models

    Article • January 2007, ACM (Association for Computing Machinery)

    Dr Mark Moll, Professor Lydia E Kavraki

  51. Distributed Control of the Center of Mass of a Modular Robot

    Article • October 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  52. SUPERBOT: A Deployable, Multi-Functional, and Modular Self-Reconfigurable Robotic System

    Article • October 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  53. Modular, Multifunctional and Reconfigurable SuperBot for Space Applications

    Article • September 2006, American Institute of Aeronautics and Astronautics (AIAA)

    Dr Mark Moll

  54. Path planning for deformable linear objects

    Article • IEEE Transactions on Robotics, August 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  55. Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

    Article • Proceedings of the National Academy of Sciences, June 2006, Proceedings of the National Academy of Sciences

    Dr Mark Moll, Professor Lydia E Kavraki

  56. Path Planning for Variable Resolution Minimal-Energy Curves of Constant Length

    Article • January 2005, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  57. Path planning for minimal energy curves of constant length

    Article • January 2004, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  58. Reconstructing the Shape and Motion of Unknown Objects with Active Tactile Sensors

    Article • January 2004, Springer Science + Business Media

    Dr Mark Moll

  59. Aligning parts for micro assemblies

    Article • Assembly Automation, March 2002, Emerald

    Dr Mark Moll

  60. Manipulation of Pose Distributions

    Article • The International Journal of Robotics Research, March 2002, SAGE Publications

    Dr Mark Moll

  61. Convergence-Zone Episodic Memory: Analysis and Simulations

    Article • Neural Networks, August 1997, Elsevier

    Dr Mark Moll

  62. The capacity of convergence-zone episodic memory

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  63. Roadmap Methods for Protein Folding

    Article • Springer Science + Business Media

    Dr Mark Moll