All Stories

  1. Comparison of SHAPE Reagents for Mapping RNA Structures Inside Living Cells

    Article • RNA, November 2016, Cold Spring Harbor Laboratory Press

    Mr Ryan Alexander Flynn

  2. An inducible long noncoding RNA amplifies DNA damage signaling

    Article • Nature Genetics, September 2016, Springer Science + Business Media

    Mr Ryan Alexander Flynn

  3. HiChIP: Efficient and sensitive analysis of protein-directed genome architecture

    Article • September 2016, Cold Spring Harbor Laboratory Press

    Mr Ryan Alexander Flynn

  4. RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure

    Article • Cell, May 2016, Elsevier

    Mr Ryan Alexander Flynn

  5. irCLIP platform for efficient characterization of protein–RNA interactions

    Article • Nature Methods, April 2016, Nature

    Mr Ryan Alexander Flynn

  6. 7SK-BAF axis controls pervasive transcription at enhancers

    Article • Nature Structural & Molecular Biology, February 2016, Nature

    Mr Ryan Alexander Flynn

  7. Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE

    Article • Nature Protocols, January 2016, Nature

    Mr Ryan Alexander Flynn

  8. Systematic Discovery of Xist RNA Binding Proteins

    Article • Cell, April 2015, Elsevier

    Mr Ryan Alexander Flynn

  9. Structural imprints in vivo decode RNA regulatory mechanisms

    Article • Nature, March 2015, Nature

    Mr Ryan Alexander Flynn

  10. m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells

    Article • Cell Stem Cell, December 2014, Elsevier

    Mr Ryan Alexander Flynn

  11. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing

    Article • Nature, November 2014, Nature

    Mr Ryan Alexander Flynn

  12. Dissecting noncoding and pathogen RNA–protein interactomes

    Article • RNA, November 2014, Cold Spring Harbor Laboratory Press

    Mr Ryan Alexander Flynn

  13. RNA structural analysis by evolving SHAPE chemistry

    Article • Wiley Interdisciplinary Reviews - RNA, August 2014, Wiley

    Mr Ryan Alexander Flynn

  14. Long Noncoding RNAs in Cell-Fate Programming and Reprogramming

    Article • Cell Stem Cell, June 2014, Elsevier

    Mr Ryan Alexander Flynn

  15. Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency

    Article • eLife, February 2014, eLife

    Mr Ryan Alexander Flynn

  16. Landscape and variation of RNA secondary structure across the human transcriptome

    Article • Nature, January 2014, Nature

    Mr Ryan Alexander Flynn

  17. Control of somatic tissue differentiation by the long non-coding RNA TINCR

    Article • Nature, December 2012, Nature

    Mr Ryan Alexander Flynn

  18. RNA SHAPE analysis in living cells

    Article • Nature Methods, November 2012, Nature

    Mr Ryan Alexander Flynn

  19. Active chromatin and noncoding RNAs: an intimate relationship

    Article • Current Opinion in Genetics & Development, April 2012, Elsevier

    Mr Ryan Alexander Flynn

  20. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

    Article • Nature, March 2011, Nature

    Mr Ryan Alexander Flynn