All Stories

  1. Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention

    Article • Journal of Separation Science, September 2018, Wiley

    Dr Magnus Palmblad

  2. A protein standard that emulates homology for the characterization of protein inference algorithms

    Article • Journal of Proteome Research, April 2018, American Chemical Society (ACS)

    Dr Magnus Palmblad, Dr. Yasset Perez-Riverol

  3. Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

    Article • Journal of the American Society for Mass Spectrometry, January 2018, Springer Science + Business Media

    Dr Magnus Palmblad

  4. A protein standard that emulates homology for the characterization of protein inference algorithms

    Article • December 2017, Cold Spring Harbor Laboratory Press

    Dr Magnus Palmblad, Dr. Yasset Perez-Riverol

  5. COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies

    Article • Journal of Proteome Research, November 2017, American Chemical Society (ACS)

    Dr Magnus Palmblad

  6. Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services

    Article • Tropical Medicine and Health, October 2017, Springer Science + Business Media

    Dr Magnus Palmblad

  7. A community proposal to integrate proteomics activities in ELIXIR

    Article • F1000Research, June 2017, Faculty of 1000, Ltd.

    Dr Magnus Palmblad, Mr Rafael C Jimenez, DR Juan Antonio Vizcaino, Peter Horvatovich, Lennart Martens, Albert Heck

  8. ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments

    Article • Journal of Proteome Research, January 2017, American Chemical Society (ACS)

    Dr Magnus Palmblad

  9. Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics

    Article • International Archives of Allergy and Immunology, January 2017, Karger Publishers

    Dr Magnus Palmblad

  10. Visualizing and comparing results of different peptide identification methods

    Article • Briefings in Bioinformatics, December 2016, Oxford University Press (OUP)

    Dr Magnus Palmblad

  11. Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

    Article • Journal of the American Society for Mass Spectrometry, December 2016, Springer Science + Business Media

    Dr Magnus Palmblad, Dr Robert Ernst

  12. A full-body transcriptome and proteome resource for the European common carp

    Article • BMC Genomics, September 2016, Springer Science + Business Media

    Dr Magnus Palmblad

  13. Species and tissues specific differentiation of processed animal proteins in aquafeeds using proteomics tools

    Article • Journal of Proteomics, September 2016, Elsevier

    Dr Magnus Palmblad

  14. Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services

    Article • Journal of Informetrics, August 2016, Elsevier

    Dr Magnus Palmblad

  15. Identification of meat products by shotgun spectral matching

    Article • Food Chemistry, July 2016, Elsevier

    Dr Magnus Palmblad

  16. A Pipeline for Differential Proteomics in Unsequenced Species

    Article • Journal of Proteome Research, June 2016, American Chemical Society (ACS)

    Dr Magnus Palmblad

  17. Authentication of Closely Related Fish and Derived Fish Products Using Tandem Mass Spectrometry and Spectral Library Matching

    Article • Journal of Agricultural and Food Chemistry, May 2016, American Chemical Society (ACS)

    Dr Magnus Palmblad

  18. Scientific workflows for bibliometrics

    Article • Scientometrics, February 2016, Springer Science + Business Media

    Dr Magnus Palmblad

  19. Differentiating samples and experimental protocols by direct comparison of tandem mass spectra

    Article • Rapid Communications in Mass Spectrometry, February 2016, Wiley

    Dr Magnus Palmblad

  20. MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS

    Article • Journal of Proteome Research, December 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  21. Developments in FTICR-MS and Its Potential for Body Fluid Signatures

    Article • International Journal of Molecular Sciences, November 2015, MDPI AG

    Dr Magnus Palmblad

  22. Scientific workflow optimization for improved peptide and protein identification

    Article • BMC Bioinformatics, September 2015, Springer Science + Business Media

    Dr Magnus Palmblad

  23. Bibliometric Mapping: Eight Decades of Analytical Chemistry, With Special Focus on the Use of Mass Spectrometry

    Article • Analytical Chemistry, May 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  24. Assessing the translational landscape of myogenic differentiation by ribosome profiling

    Article • Nucleic Acids Research, April 2015, Oxford University Press (OUP)

    Dr Magnus Palmblad

  25. Top-Down MALDI-In-Source Decay-FTICR Mass Spectrometry of Isotopically Resolved Proteins

    Article • Analytical Chemistry, March 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  26. ARA290 Improves Insulin Release and Glucose Tolerance in Type 2 Diabetic Goto-Kakizaki Rats

    Article • Molecular Medicine, January 2015, The Feinstein Institute for Medical Research (North Shore LIJ Research Institute)

    Dr Magnus Palmblad

  27. SPE-MALDI Profiling of Serum Peptides and Proteins by Ultrahigh Resolution FTICR-MS

    Article • Chromatographia, December 2014, Springer Science + Business Media

    Dr Magnus Palmblad

  28. A new optimization phase for scientific workflow management systems

    Article • Future Generation Computer Systems, July 2014, Elsevier

    Dr Magnus Palmblad

  29. Structural Analysis of an Intact Monoclonal Antibody by Online Electrochemical Reduction of Disulfide Bonds and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Analytical Chemistry, June 2014, American Chemical Society (ACS)

    Dr Magnus Palmblad

  30. PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments

    Article • Journal of Proteomics, June 2014, Elsevier

    Dr Magnus Palmblad

  31. Fibronectin is a serum biomarker for Duchenne muscular dystrophy

    Article • PROTEOMICS - CLINICAL APPLICATIONS, March 2014, Wiley

    Dr Magnus Palmblad

  32. Identifying Proteins in Zebrafish Embryos Using Spectral Libraries Generated from Dissected Adult Organs and Tissues

    Article • Journal of Proteome Research, March 2014, American Chemical Society (ACS)

    Dr Magnus Palmblad

  33. Authentication of Fish Products by Large-Scale Comparison of Tandem Mass Spectra

    Article • Journal of Proteome Research, November 2013, American Chemical Society (ACS)

    Dr Magnus Palmblad

  34. Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications

    Article • October 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  35. Detection and Structural Elucidation of Esterified Oxylipids in Human Synovial Fluid by Electrospray Ionization-Fourier Transform Ion-Cyclotron Mass Spectrometry and Liquid Chromatography-Ion Trap-MS3: Detection of Esterified Hydroxylated Docosapentaen...

    Article • Analytical Chemistry, June 2013, American Chemical Society (ACS)

    Dr Magnus Palmblad

  36. Identification of genetic variants influencing the human plasma proteome

    Article • Proceedings of the National Academy of Sciences, March 2013, Proceedings of the National Academy of Sciences

    Dr Stefan Enroth, Dr Magnus Palmblad

  37. Comparison of peptide and protein fractionation methods in proteomics

    Article • EuPA Open Proteomics, January 2013, Elsevier

    Dr Magnus Palmblad

  38. Parallel deep transcriptome and proteome analysis of zebrafish larvae

    Article • BMC Research Notes, January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  39. Tandem mass spectrometry for species recognition and phenotyping in fish

    Article • January 2013, Wageningen Academic Publishers

    Dr Magnus Palmblad

  40. Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins

    Article • BMC Research Notes, January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  41. Isotopic Distributions

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  42. Simple Proteomics Data Analysis in the Object-Oriented PowerShell

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  43. Retention Time Prediction and Protein Identification

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  44. Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data

    Article • Journal of Proteome Research, October 2012, American Chemical Society (ACS)

    Dr Magnus Palmblad

  45. Proteomic analysis ofTaenia soliummetacestode excretion-secretion proteins

    Article • PROTEOMICS, June 2012, Wiley

    Dr Magnus Palmblad

  46. Scientific Workflow Management in Proteomics

    Article • Molecular & Cellular Proteomics, March 2012, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Magnus Palmblad

  47. Partially Sequenced Organisms, Decoy Searches and False Discovery Rates

    Article • Journal of Proteome Research, March 2012, American Chemical Society (ACS)

    Dr Magnus Palmblad

  48. Molecular phylogenetics by direct comparison of tandem mass spectra

    Article • Rapid Communications in Mass Spectrometry, February 2012, Wiley

    Dr Magnus Palmblad

  49. Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface

    Article • Journal of Proteomics, February 2012, Elsevier

    Dr Magnus Palmblad

  50. Protein Fractionation for Quantitative Plasma Proteomics by Semi-Selective Precipitation

    Article • Journal of Proteomics & Bioinformatics, January 2012, OMICS Publishing Group

    Dr Magnus Palmblad

  51. Data Decomposition in Biomedical e-Science Applications

    Article • December 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  52. Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry

    Article • Rapid Communications in Mass Spectrometry, November 2011, Wiley

    Dr Magnus Palmblad

  53. Protein expression dynamics during Escherichia Coli glucose-lactose diauxie

    Article • BMC Microbiology, January 2011, Springer Science + Business Media

    Dr Magnus Palmblad

  54. Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling

    Article • Journal of the American Society for Mass Spectrometry, September 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  55. Targeted proteomics approach to species-level identification of Bacillus thuringiensis spores by AP-MALDI-MS

    Article • Journal of the American Society for Mass Spectrometry, June 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  56. A novel mass spectrometry cluster for high-throughput quantitative proteomics

    Article • Journal of the American Society for Mass Spectrometry, June 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  57. Quantitative metabolism using AMS: Choosing a labeled precursor

    Article • Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms, April 2010, Elsevier

    Dr Magnus Palmblad

  58. “Lossless” compression of high resolution mass spectra of small molecules

    Article • Metabolomics, March 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  59. Immunoglobulin G Glycopeptide Profiling by Matrix-Assisted Laser Desorption Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Analytical Chemistry, February 2010, American Chemical Society (ACS)

    Dr Magnus Palmblad

  60. High Resolution Mass Spectrometry for Rapid Characterization of Combinatorial Peptide Libraries

    Article • Journal of Combinatorial Chemistry, January 2010, American Chemical Society (ACS)

    Dr Magnus Palmblad

  61. Alignment of capillary electrophoresis–mass spectrometry datasets using accurate mass information

    Article • Analytical and Bioanalytical Chemistry, October 2009, Springer Science + Business Media

    Dr Magnus Palmblad

  62. Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration

    Article • Journal of Proteomics, May 2009, Elsevier

    Dr Magnus Palmblad

  63. Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations

    Article • Rapid Communications in Mass Spectrometry, January 2009, Wiley

    Dr Magnus Palmblad

  64. Mass spectrometry in clinical proteomics - from the present to the future

    Article • PROTEOMICS - CLINICAL APPLICATIONS, January 2009, Wiley

    Dr Magnus Palmblad, Ali Tiss

  65. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

    Article • Phytochemistry, July 2008, Elsevier

    Dr Magnus Palmblad

  66. Heat-Shock Response inArabidopsis thalianaExplored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling

    Article • Journal of Proteome Research, February 2008, American Chemical Society (ACS)

    Dr Magnus Palmblad

  67. Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction

    Article • Journal of the American Society for Mass Spectrometry, October 2007, Springer Science + Business Media

    Dr Magnus Palmblad

  68. Quantitative proteomics using uniform15N-labeling, MASCOT, and the trans-proteomic pipeline

    Article • PROTEOMICS, October 2007, Wiley

    Dr Magnus Palmblad

  69. Biochemical paths in humans and cells: Frontiers of AMS bioanalysis

    Article • Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms, June 2007, Elsevier

    Dr Magnus Palmblad

  70. Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry

    Article • Journal of the American Society for Mass Spectrometry, April 2007, Springer Science + Business Media

    Dr Magnus Palmblad

  71. Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests

    Article • Rapid Communications in Mass Spectrometry, January 2006, Wiley

    Dr Magnus Palmblad

  72. Mass by Energy Loss Quantitation as a Practical Submicrogram Balance

    Article • Analytical Chemistry, February 2005, American Chemical Society (ACS)

    Dr Magnus Palmblad

  73. Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips

    Article • Journal of Chromatography B, January 2005, Elsevier

    Dr Magnus Palmblad

  74. Neuroscience and accelerator mass spectrometry

    Article • Journal of Mass Spectrometry, January 2005, Wiley

    Dr Magnus Palmblad

  75. Explorative Study of the Protein Composition of Amniotic Fluid by Liquid Chromatography Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Journal of Proteome Research, August 2004, American Chemical Society (ACS)

    Dr Magnus Palmblad

  76. Protein identification by liquid chromatography–mass spectrometry using retention time prediction

    Article • Journal of Chromatography B, April 2004, Elsevier

    Dr Magnus Palmblad

  77. Accelerator Mass Spectrometry in Protein Analysis

    Article • January 2004, Springer Science + Business Media

    Dr Magnus Palmblad

  78. Counting Statistics and Ion Interval Density in AMS

    Article • Radiocarbon, January 2004, Cambridge University Press

    Dr Magnus Palmblad

  79. α-Particle Energy Loss Measurement of Microgram Depositions of Biomolecules

    Article • Analytical Chemistry, September 2003, American Chemical Society (ACS)

    Dr Magnus Palmblad

  80. Electron Donor−Acceptor Dyads Based on Ruthenium(II) Bipyridine and Terpyridine Complexes Bound to Naphthalenediimide

    Article • Inorganic Chemistry, May 2003, American Chemical Society (ACS)

    Dr Magnus Palmblad

  81. Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

    Article • PROTEOMICS, February 2003, Wiley

    Dr Magnus Palmblad

  82. Investigation of Lignin Oligomers Using Electrospray Ionisation Mass Spectrometry

    Article • Holzforschung, January 2003, De Gruyter

    Dr Magnus Palmblad

  83. Identification and Characterization of Peptides and Proteins Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • January 2003, Elsevier

    Dr Magnus Palmblad

  84. Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

    Article • Analytical Chemistry, November 2002, American Chemical Society (ACS)

    Dr Magnus Palmblad

  85. Rapid Analysis of Tryptically Digested Cerebrospinal Fluid Using Capillary Electrophoresis−Electrospray Ionization−Fourier Transform Ion Cyclotron Resonance−Mass Spectrometry

    Article • Journal of Proteome Research, August 2002, American Chemical Society (ACS)

    Dr Magnus Palmblad

  86. Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

    Article • Rapid Communications in Mass Spectrometry, April 2002, Wiley

    Dr Magnus Palmblad

  87. Oxidation of Methionine 35 Attenuates Formation of Amyloid beta -Peptide 1-40 Oligomers

    Article • Journal of Biological Chemistry, March 2002, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Magnus Palmblad

  88. Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

    Article • Mass Spectrometry Reviews, January 2002, Wiley

    Dr Magnus Palmblad

  89. Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

    Article • Journal of the American Society for Mass Spectrometry, November 2001, Springer Science + Business Media

    Dr Magnus Palmblad

  90. Mechanistic studies of multipole storage assisted dissociation

    Article • Journal of the American Society for Mass Spectrometry, March 2000, Springer Science + Business Media

    Dr Magnus Palmblad

  91. A 9.4 T Fourier transform ion cyclotron resonance mass spectrometer: description and performance

    Article • European Journal of Mass Spectrometry, January 2000, IM Publications

    Dr Magnus Palmblad

  92. Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer

    Article • Rapid Communications in Mass Spectrometry, January 2000, Wiley

    Dr Magnus Palmblad

  93. A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter

    Article • Rapid Communications in Mass Spectrometry, July 1999, Wiley

    Dr Magnus Palmblad

  94. Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer

    Article • Rapid Communications in Mass Spectrometry, March 1999, Wiley

    Dr Magnus Palmblad

  95. Retention Time Prediction and Protein Identification

    Article • Springer Science + Business Media

    Dr Magnus Palmblad