All Stories

  1. Anne O’Tate: Value-added PubMed search engine for analysis and text mining

    Article • PLoS ONE, March 2021, PLOS

    Dr Neil R Smalheiser

  2. Effect size, sample size and power of forced swim test assays in mice: Guidelines for investigators to optimize reproducibility

    Article • PLoS ONE, February 2021, PLOS

    Dr Neil R Smalheiser

  3. The RNA-centred view of the synapse: non-coding RNAs and synaptic plasticity

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, August 2014, Royal Society Publishing

    Dr Neil R Smalheiser

  4. Expression of microRNAs and Other Small RNAs in Prefrontal Cortex in Schizophrenia, Bipolar Disorder and Depressed Subjects

    Article • PLoS ONE, January 2014, PLOS

    Dr Neil R Smalheiser

  5. Design and implementation of Metta, a metasearch engine for biomedical literature retrieval intended for systematic reviewers

    Article • Health Information Science and Systems, January 2014, Springer Science + Business Media

    Dr Neil R Smalheiser

  6. Health Information Science

    Article • January 2014

    Dr Neil R Smalheiser

  7. Enoxacin Elevates MicroRNA Levels in Rat Frontal Cortex and Prevents Learned Helplessness

    Article • Frontiers in Psychiatry, January 2014, Frontiers

    Dr Neil R Smalheiser

  8. How many scientists does it take to change a paradigm?

    Article • EMBO Reports, September 2013, EMBO

    Dr Neil R Smalheiser

  9. Primary microRNA precursor transcripts are localized at post‐synaptic densities in adult mouse forebrain

    Article • Journal of Neurochemistry, September 2012, Wiley

    Dr Neil R Smalheiser

  10. Preparing Synaptoneurosomes from Adult Mouse Forebrain

    Article • August 2012, Springer Science + Business Media

    Dr Neil R Smalheiser

  11. A framework for entity resolution with efficient blocking

    Article • August 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Neil R Smalheiser

  12. The search for endogenous siRNAs in the mammalian brain

    Article • Experimental Neurology, June 2012, Elsevier

    Dr Neil R Smalheiser

  13. MicroRNA Expression Is Down-Regulated and Reorganized in Prefrontal Cortex of Depressed Suicide Subjects

    Article • PLoS ONE, March 2012, PLOS

    Dr Neil R Smalheiser

  14. Transcription factor binding sites are highly enriched within microRNA precursor sequences

    Article • Biology Direct, December 2011, Springer Science + Business Media

    Dr Neil R Smalheiser

  15. Mitochondrial small RNAs that are up-regulated in hippocampus during olfactory discrimination training in mice

    Article • Mitochondrion, November 2011, Elsevier

    Dr Neil R Smalheiser

  16. Literature‐based discovery: Beyond the ABCs

    Article • Journal of the American Society for Information Science and Technology, July 2011, Wiley

    Dr Neil R Smalheiser

  17. Editorial for Special Issue: ACM IHI 2010 Best Papers

    Article • Journal of Medical Systems, May 2011, Springer Science + Business Media

    Dr Neil R Smalheiser

  18. Distribution of “Characteristic” Terms in MEDLINE Literatures

    Article • Information, March 2011, MDPI AG

    Dr Neil R Smalheiser

  19. MicroRNA expression in rat brain exposed to repeated inescapable shock: differential alterations in learned helplessness vs. non-learned helplessness

    Article • The International Journal of Neuropsychopharmacology, January 2011, Oxford University Press (OUP)

    Dr Neil R Smalheiser

  20. Sometimes Non-IRB Approved Research Deserves A Second Look

    Article • Journal of Clinical Research & Bioethics, January 2011, OMICS Publishing Group

    Dr Neil R Smalheiser

  21. Evidence-based medicine, the essential role of systematic reviews, and the need for automated text mining tools

    Article • November 2010, ACM (Association for Computing Machinery)

    Dr Neil R Smalheiser

  22. Olfactory Discrimination Training Up-Regulates and Reorganizes Expression of MicroRNAs in Adult Mouse Hippocampus

    Article • ASN NEURO, January 2010, SAGE Publications

    Dr Neil R Smalheiser

  23. Do Neural Cells Communicate with Endothelial Cells via Secretory Exosomes and Microvesicles?

    Article • Cardiovascular Psychiatry and Neurology, August 2009, Hindawi Publishing Corporation

    Dr Neil R Smalheiser

  24. Author name disambiguation in MEDLINE

    Article • ACM Transactions on Knowledge Discovery from Data, July 2009, ACM (Association for Computing Machinery)

    Dr Neil R Smalheiser

  25. microRNA Regulation of Synaptic Plasticity

    Article • NeuroMolecular Medicine, May 2009, Springer Science + Business Media

    Dr Neil R Smalheiser

  26. Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE

    Article • Computer Methods and Programs in Biomedicine, May 2009, Elsevier

    Dr Neil R Smalheiser

  27. Author name disambiguation

    Article • Annual Review of Information Science and Technology, January 2009, Wiley

    Dr Neil R Smalheiser

  28. Beyond (simple) reading: Strategies, discoveries, and collaborations

    Article • Proceedings of the American Society for Information Science and Technology, January 2009, Wiley

    Dr Neil R Smalheiser

  29. Natural antisense transcripts are co-expressed with sense mRNAs in synaptoneurosomes of adult mouse forebrain

    Article • Neuroscience Research, December 2008, Elsevier

    Dr Neil R Smalheiser

  30. Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain

    Article • Journal of Neurochemistry, July 2008, Wiley

    Dr Neil R Smalheiser

  31. The Place of Literature-Based Discovery in Contemporary Scientific Practice

    Article • January 2008, Springer Science + Business Media

    Dr Neil R Smalheiser

  32. Synaptic enrichment of microRNAs in adult mouse forebrain is related to structural features of their precursors

    Article • Biology Direct, January 2008, Springer Science + Business Media

    Dr Neil R Smalheiser

  33. Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results

    Article • Journal of Biomedical Discovery and Collaboration, January 2008, Springer Science + Business Media

    Dr Neil R Smalheiser

  34. Models of microRNA–target coordination

    Article • December 2007, Cambridge University Press

    Dr Neil R Smalheiser

  35. Knowledge-intensive conceptual retrieval and passage extraction of biomedical literature

    Article • July 2007, ACM (Association for Computing Machinery)

    Dr Neil R Smalheiser

  36. Exosomal transfer of proteins and RNAs at synapses in the nervous system

    Article • Biology Direct, January 2007, Springer Science + Business Media

    Dr Neil R Smalheiser

  37. Ranking indirect connections in literature‐based discovery: The role of medical subject headings

    Article • Journal of the American Society for Information Science and Technology, June 2006, Wiley

    Dr Neil R Smalheiser

  38. Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain‐dependent manner

    Article • Journal of Neurochemistry, June 2005, Wiley

    Dr Neil R Smalheiser

  39. Guidelines for Negotiating Scientific Collaboration

    Article • PLoS Biology, June 2005, PLOS

    Dr Neil R Smalheiser

  40. Erratum to publisher

    Article • Journal of the American Society for Information Science and Technology, May 2005, Wiley

    Dr Neil R Smalheiser

  41. The Arrowsmith Project: 2005 Status Report

    Article • January 2005, Springer Science + Business Media

    Dr Neil R Smalheiser

  42. The Arrowsmith Project: 2005 Status Report

    Article • January 2005, Springer Science + Business Media

    Dr Neil R Smalheiser

  43. A probabilistic similarity metric for Medline records: A model for author name disambiguation

    Article • Journal of the American Society for Information Science and Technology, November 2004, Wiley

    Dr Neil R Smalheiser

  44. Bath Toys — A Source of Gastrointestinal Infection

    Article • New England Journal of Medicine, January 2004, New England Journal of Medicine (NEJM/MMS)

    Dr Neil R Smalheiser

  45. Literature‐based discovery: New trends and techniques. Sponsored by SIG HCI

    Article • Proceedings of the American Society for Information Science and Technology, October 2003, Wiley

    Dr Neil R Smalheiser

  46. Linking investigators

    Article • EMBO Reports, February 2003, EMBO

    Dr Neil R Smalheiser

  47. Evidence for binding of the ectodomain of amyloid precursor protein 695 and activated high molecular weight kininogen

    Article • Biochimica et Biophysica Acta (BBA) - General Subjects, July 2002, Elsevier

    Dr Neil R Smalheiser

  48. Information discovery from complementary literatures: Categorizing viruses as potential weapons

    Article • Journal of the American Society for Information Science and Technology, January 2001, Wiley

    Dr Neil R Smalheiser

  49. Information discovery from complementary literatures: Categorizing viruses as potential weapons

    Article • Journal of the American Society for Information Science and Technology, January 2001, Wiley

    Dr Neil R Smalheiser

  50. Antidepressants alter cell proliferation in the adult brain in vivo and in neural cultures in vitro

    Article • European Journal of Pharmacology, January 2001, Elsevier

    Dr Neil R Smalheiser

  51. Coordinate enrichment of cranin (dystroglycan) subunits in synaptic membranes of sheep brain

    Article • Brain Research, December 2000, Elsevier

    Dr Neil R Smalheiser

  52. Walter Pitts

    Article • Perspectives in Biology and Medicine, January 2000, Project Muse

    Dr Neil R Smalheiser

  53. Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses

    Article • Computer Methods and Programs in Biomedicine, November 1998, Elsevier

    Dr Neil R Smalheiser

  54. Conserved Amphipathic Helices Near the N-Terminus and C-Terminus of the Alpha Subunit of Cranin (Dystroglycan)

    Article • Cell Adhesion and Communication, January 1998, Taylor & Francis

    Dr Neil R Smalheiser

  55. The Relationship between Perlecan and Dystroglycan and its Implication in the Formation of the Neuromuscular Junction

    Article • Cell Adhesion and Communication, January 1998, Taylor & Francis

    Dr Neil R Smalheiser

  56. An interactive system for finding complementary literatures: a stimulus to scientific discovery

    Article • Artificial Intelligence, April 1997, Elsevier

    Dr Neil R Smalheiser

  57. Rapid regulation of neurite outgrowth and retraction by phospholipase A2-derived arachidonic acid and its metabolites

    Article • Brain Research, May 1996, Elsevier

    Dr Neil R Smalheiser

  58. Localization of Cranin (Dystroglycan) at Sites of Cell-Matrix and Cell-Cell Contact: Recruitment to Focal Adhesions Is Dependent upon Extracellular Ligands

    Article • Cell Adhesion and Communication, January 1996, Taylor & Francis

    Dr Neil R Smalheiser

  59. Acute neurite retraction triggered by lysophosphatidic acid: timing of the inhibitory effects of genistein

    Article • Brain Research, October 1994, Elsevier

    Dr Neil R Smalheiser

  60. Acute Neurite Retraction Elicited by Diverse Agents Is Prevented by Genistein, a Tyrosine Kinase Inhibitor

    Article • Journal of Neurochemistry, July 1993, Wiley

    Dr Neil R Smalheiser

  61. Expression of Egr-1 in the brain of sleep deprived rats

    Article • Molecular Brain Research, March 1993, Elsevier

    Dr Neil R Smalheiser

  62. Monensin‐sensitive cellular events modulate neurite extension on laminin: An example of higher‐order regulation of cell motility

    Article • Cell Motility and the Cytoskeleton, January 1993, Wiley

    Dr Neil R Smalheiser

  63. Morphometric and time lapse analyses of rapid‐onset neurites stimulated by cycloheximide in NG108‐15 cells

    Article • International Journal of Developmental Neuroscience, December 1992, Wiley

    Dr Neil R Smalheiser

  64. Characterization of a novel set of membrane antigens associated with axonal growth. I. Biochemical and functional studies

    Article • Developmental Brain Research, October 1992, Elsevier

    Dr Neil R Smalheiser

  65. Characterization of a novel set of membrane antigens associated with axonal growth. II. Expression in the chick central nervous system

    Article • Developmental Brain Research, October 1992, Elsevier

    Dr Neil R Smalheiser

  66. Characterization of a novel set of membrane antigens associated with axonal growth. III: Expression in the regenerating goldfish optic nerve and tectum

    Article • Developmental Brain Research, October 1992, Elsevier

    Dr Neil R Smalheiser

  67. Expression of a neurally related laminin binding protein by neural crest‐derived cells that colonize the gut: Relationship to the formation of enteric ganglia

    Article • The Journal of Comparative Neurology, November 1991, Wiley

    Dr Neil R Smalheiser

  68. Role of laminin in stimulating rapid-onset neurites in NG108-15 cells: relative contribution of attachment and motility responses

    Article • Developmental Brain Research, September 1991, Elsevier

    Dr Neil R Smalheiser

  69. Cell attachment and neurite stability in NG108-15 cells: what is the role of microtubules?

    Article • Developmental Brain Research, February 1991, Elsevier

    Dr Neil R Smalheiser

  70. Cell attachment and neurite stability in NG108-15 cells: effects of 5′-deoxy, 5′-methyl thioadenosine (MTA) compared with laminin, kinase inhibitor H-7, and MN2+ ions

    Article • Developmental Brain Research, February 1990, Elsevier

    Dr Neil R Smalheiser

  71. Biosynthesis of Glycosaminoglycans and Proteoglycans

    Article • January 1989, Springer Science + Business Media

    Dr Neil R Smalheiser

  72. Morphologic plasticity of rapid-onset neurites in NG108-15 cells stimulated by substratum-bound laminin

    Article • Developmental Brain Research, January 1989, Elsevier

    Dr Neil R Smalheiser

  73. Analysis of slow-onset neurite formation in NG108-15 cells: implications for a unified model of neurite elongation

    Article • Developmental Brain Research, January 1989, Elsevier

    Dr Neil R Smalheiser

  74. Altered cell shapes in fibroblasts treated with 5′-deoxy-5′-methylthioadenosine: relation to morphogenesis of neural cells

    Article • Developmental Brain Research, January 1989, Elsevier

    Dr Neil R Smalheiser

  75. Means to immortalize neural cells

    Article • Trends in Neurosciences, January 1988, Elsevier

    Dr Neil R Smalheiser

  76. The possible role of “sibling neurite bias” in the coordination of neurite extension, branching, and survival

    Article • Journal of Neurobiology, November 1984, Wiley

    Dr Neil R Smalheiser

  77. Radiosensitivity and differentiation of ganglion cells within fetal mouse retinal explants in vitro

    Article • Developmental Brain Research, March 1984, Elsevier

    Dr Neil R Smalheiser

  78. Laminin as a substrate for retinal axons in vitro

    Article • Developmental Brain Research, January 1984, Elsevier

    Dr Neil R Smalheiser

  79. Specific neuritic pathways and arborizations formed by fetal mouse dorsal root ganglion cells within organized spinal cord explants in culture: A peroxidase-labeling study

    Article • Developmental Brain Research, October 1981, Elsevier

    Dr Neil R Smalheiser

  80. Positional specificity tests in co-culture of retinal and tectal explants

    Article • Brain Research, June 1981, Elsevier

    Dr Neil R Smalheiser

  81. Neurites from mouse retina and dorsal root ganglion explants show specific behavior within co-cultured tectum or spinal cord

    Article • Brain Research, March 1981, Elsevier

    Dr Neil R Smalheiser

  82. Development of ganglion cells and their axons in organized cultures of fetal mouse retinal explants

    Article • Brain Research, January 1981, Elsevier

    Dr Neil R Smalheiser

  83. Formation of functional retinotectal connections in co-cultures of fetal mouse explants

    Article • Brain Research, June 1978, Elsevier

    Dr Neil R Smalheiser

  84. Complications in Mammalian MicroRNA Target Prediction

    Article • Springer Science + Business Media

    Dr Neil R Smalheiser