All Stories

  1. Structural variability of CG-rich DNA 18-mers accommodating double T–T mismatches

    Article • Acta Crystallographica Section D Structural Biology, November 2020, International Union of Crystallography

    Dr Bohdan Schneider

  2. A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

    Article • F1000Research, April 2020, Faculty of 1000, Ltd.

    Dr. Alexandre M.J.J. Bonvin, Dr Anastassis Perrakis, rik wierenga, Dr Bohdan Schneider, Dr John M Hancock

  3. A DNA structural alphabet provides new insight into DNA flexibility

    Article • Acta Crystallographica Section D Structural Biology, January 2018, International Union of Crystallography

    Dr Bohdan Schneider

  4. Crystal structure of human interferon-γ receptor 2 reveals the structural basis for receptor specificity

    Article • Acta Crystallographica Section D Structural Biology, August 2016, International Union of Crystallography

    Dr Bohdan Schneider

  5. Flexibility of protein and DNA residues revealed by crystallographic B factors

    Article • Acta Crystallographica Section D Biological Crystallography, August 2014, International Union of Crystallography

    Dr Bohdan Schneider

  6. Structural features of protein/DNA interactions studied by novel bioinformatic approach

    Article • Nucleic Acids Research, December 2013, Oxford University Press (OUP)

    Dr Bohdan Schneider

  7. Human interleukin‐23 receptor antagonists derived from an albumin‐binding domain scaffold inhibit IL‐23‐dependent ex vivo expansion of IL‐17‐producing T‐cells

    Article • Proteins Structure Function and Bioinformatics, November 2013, Wiley

    Dr Bohdan Schneider

  8. Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: Complex theoretical and experimental studies

    Article • Biophysical Chemistry, October 2013, Elsevier

    Dr Bohdan Schneider

  9. Automatic workflow for the classification of local DNA conformations

    Article • BMC Bioinformatics, June 2013, Springer Science + Business Media

    Dr Bohdan Schneider

  10. Increasing Affinity of Interferon-γReceptor 1 to Interferon-

    Article • BioMed Research International, January 2013, Hindawi Publishing Corporation

    Dr Lada Biedermannová, Dr Bohdan Schneider

  11. Design and Testing of High-Affinity Mutants of Interferon Gamma Receptor 1

    Article • Biophysical Journal, January 2013, Elsevier

    Dr Bohdan Schneider

  12. Bioinformatic Analysis of Protein/DNA Interactions

    Article • Biophysical Journal, January 2013, Elsevier

    Dr Bohdan Schneider

  13. Evolution of REP diversity: a comparative study

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Dr Bohdan Schneider

  14. Calculating the Response of NMR Shielding Tensor σ(31P) and 2J(31P,13C) Coupling Constants in Nucleic Acid Phosphate to Coordination of the Mg2+ Cation

    Article • The Journal of Physical Chemistry A, March 2011, American Chemical Society (ACS)

    Dr Bohdan Schneider

  15. Bioinformatic Analysis of the Protein/DNA Interface

    Article • Biophysical Journal, February 2011, Elsevier

    Dr Bohdan Schneider

  16. A short survey on protein blocks

    Article • Biophysical Reviews, August 2010, Springer Science + Business Media

    Dr Bohdan Schneider

  17. Charge Transport in DNA Oligonucleotides with Various Base-Pairing Patterns

    Article • The Journal of Physical Chemistry B, March 2010, American Chemical Society (ACS)

    Dr Bohdan Schneider

  18. Structure and Dynamics of the ApA, ApC, CpA, and CpC RNA Dinucleoside Monophosphates Resolved with NMR Scalar Spin−Spin Couplings

    Article • The Journal of Physical Chemistry B, January 2009, American Chemical Society (ACS)

    Dr Bohdan Schneider

  19. Conductivity of natural and modified DNA measured by scanning tunneling microscopy. The effect of sequence, charge and stacking

    Article • Biophysical Chemistry, November 2008, Elsevier

    Dr Bohdan Schneider

  20. Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides

    Article • Journal of Biomolecular NMR, October 2008, Springer Science + Business Media

    Dr Bohdan Schneider

  21. DNA conformations and their sequence preferences

    Article • Nucleic Acids Research, May 2008, Oxford University Press (OUP)

    Dr Bohdan Schneider

  22. Building of RNA and DNA double helices into electron density

    Article • Acta Crystallographica Section D Biological Crystallography, May 2008, International Union of Crystallography

    Dr Bohdan Schneider

  23. RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

    Article • RNA, January 2008, Cold Spring Harbor Laboratory Press

    Dr Bohdan Schneider

  24. Scanning tunneling spectrosopy study of DNA conductivity

    Article • Open Physics, January 2008, De Gruyter Open Sp. z o.o.

    Dr Bohdan Schneider

  25. Calculation of Structural Behavior of Indirect NMR Spin−Spin Couplings in the Backbone of Nucleic Acids

    Article • The Journal of Physical Chemistry B, October 2006, American Chemical Society (ACS)

    Dr Bohdan Schneider

  26. Cations and Hydration in Catalytic RNA: Molecular Dynamics of the Hepatitis Delta Virus Ribozyme

    Article • Biophysical Journal, July 2006, Elsevier

    Dr Bohdan Schneider, Professor Nils G Walter

  27. Indirect NMR Spin−Spin Coupling Constants 3J(P,C) and 2J(P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

    Article • Journal of the American Chemical Society, May 2006, American Chemical Society (ACS)

    Dr Bohdan Schneider

  28. A Biocurator Perspective: Annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank

    Article • PLoS Computational Biology, January 2006, PLOS

    Dr Bohdan Schneider

  29. Sugar Pucker Modulates the Cross-Correlated Relaxation Rates across the Glycosidic Bond in DNA

    Article • Journal of the American Chemical Society, September 2005, American Chemical Society (ACS)

    Dr Bohdan Schneider

  30. Knowledge-Based Elastic Potentials for Docking Drugs or Proteins with Nucleic Acids

    Article • Biophysical Journal, February 2005, Elsevier

    Dr Bohdan Schneider

  31. Fundamentals of DNA and RNA Structure

    Article • January 2005, Wiley

    Dr Bohdan Schneider

  32. The Nucleic Acid Database

    Article • January 2005, Wiley

    Dr Bohdan Schneider, christine zardecki

  33. The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

    Article • Physical Chemistry Chemical Physics, January 2003, Royal Society of Chemistry

    Dr Bohdan Schneider

  34. The Nucleic Acid Database

    Article • Acta Crystallographica Section D Biological Crystallography, May 2002, International Union of Crystallography

    Dr Bohdan Schneider

  35. The Protein Data Bank

    Article • Acta Crystallographica Section D Biological Crystallography, May 2002, International Union of Crystallography

    Dr Bohdan Schneider

  36. Conformational Aspects of the Interaction of New 2,4-Dihydroxyacetophenone Derivatives with Leukotriene Receptors

    Article • January 2000, Springer Science + Business Media

    Dr Bohdan Schneider

  37. Hydration of the Phosphate Group in Double-Helical DNA

    Article • Biophysical Journal, November 1998, Elsevier

    Dr Bohdan Schneider

  38. An Analysis of the Relationship between Hydration and Protein-DNA Interactions

    Article • Biophysical Journal, November 1998, Elsevier

    Dr Bohdan Schneider

  39. Structure of d(TGCGCA)2 and a Comparison with Other DNA Hexamers

    Article • Acta Crystallographica Section D Biological Crystallography, November 1998, International Union of Crystallography

    Dr Bohdan Schneider

  40. THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS

    Article • September 1997, Protein Data Bank, Rutgers University

    Dr Bohdan Schneider

  41. Conformations of the sugar‐phosphate backbone in helical DNA crystal structures

    Article • Biopolymers, July 1997, Wiley

    Dr Bohdan Schneider

  42. Conformations of the sugar-phosphate backbone in helical DNA crystal structures

    Article • Biopolymers, July 1997, Wiley

    Dr Bohdan Schneider

  43. Geometry of the Phosphate Group and Its Interactions with Metal Cations in Crystals and ab Initio Calculations

    Article • Journal of the American Chemical Society, January 1996, American Chemical Society (ACS)

    Dr Bohdan Schneider

  44. Geometric Parameters in Nucleic Acids:  Sugar and Phosphate Constituents

    Article • Journal of the American Chemical Society, January 1996, American Chemical Society (ACS)

    Dr Bohdan Schneider

  45. Hydration of the DNA bases is local

    Article • Biophysical Journal, December 1995, Elsevier

    Dr Bohdan Schneider

  46. A systematic method for studying the spatial distribution of water molecules around nucleic acid bases

    Article • Biophysical Journal, December 1993, Elsevier

    Dr Bohdan Schneider

  47. Structure of an interleukin-1.beta. mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition

    Article • Biochemistry, August 1993, American Chemical Society (ACS)

    Dr Bohdan Schneider

  48. Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers

    Article • Biochemistry, October 1992, American Chemical Society (ACS)

    Dr Bohdan Schneider

  49. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

    Article • Biophysical Journal, September 1992, Elsevier

    Dr Bohdan Schneider

  50. Hydration of DNA bases: Analysis of crystallographic data

    Article • Biopolymers, July 1992, Wiley

    Dr Bohdan Schneider

  51. Three-dimensional structures of substituted benzylphenyl ethers

    Article • Collection of Czechoslovak Chemical Communications, January 1991, Institute of Organic Chemistry & Biochemistry

    Dr Bohdan Schneider

  52. Crystal and molecular structure of 2-dimethylaminomethyl-3'-hydroxydiphenyl sulphide maleate

    Article • Collection of Czechoslovak Chemical Communications, January 1990, Institute of Organic Chemistry & Biochemistry

    Dr Bohdan Schneider

  53. Three-dimensional structures of substituted diphenyl sulfides

    Article • Collection of Czechoslovak Chemical Communications, January 1990, Institute of Organic Chemistry & Biochemistry

    Dr Bohdan Schneider

  54. 4H-Benzo[4,5]cyclohepta[1,2-b]thiophenes and 9,10-dihydro derivatives - Sulfonium analogues of pizotifen and ketotifen; Chirality of ketotifen; Synthesis of the 2-bromo derivative of ketotifen

    Article • Collection of Czechoslovak Chemical Communications, January 1989, Institute of Organic Chemistry & Biochemistry

    Dr Bohdan Schneider

  55. Potential energy surface of the (H2)2 dimer: an MP2 study

    Article • January 1988

    Dr Bohdan Schneider

  56. The superposition error problem: The (HF)2 and (H2O)2 complexes at the SCF and MP2 levels

    Article • Journal of Molecular Structure THEOCHEM, July 1986, Elsevier

    Dr Bohdan Schneider

  57. Discriminative interactions between chiral molecules: internal discrimination in 1,2-difluorohydrazine

    Article • Canadian Journal of Chemistry, July 1985, Canadian Science Publishing

    Dr Bohdan Schneider