All Stories

  1. What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?

    Article • Genes, September 2022, MDPI AG

    Glen Satten

  2. Testing microbiome associations with survival times at both the community and individual taxon levels

    Article • PLoS Computational Biology, September 2022, PLOS

    Glen Satten

  3. LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

    Article • Proceedings of the National Academy of Sciences, July 2022, Proceedings of the National Academy of Sciences

    Glen Satten

  4. Associations between microbial communities and key chemical constituents in U.S. domestic moist snuff

    Article • PLoS ONE, May 2022, PLOS

    Glen Satten

  5. Efficient estimation of indirect effects in case‐control studies using a unified likelihood framework

    Article • Statistics in Medicine, March 2022, Wiley

    Glen Satten

  6. LOCOM: A logistic regression model for testing differential abundance in compositional microbiome data with false discovery rate control

    Article • October 2021, Research Square

    Glen Satten

  7. A rarefaction-based extension of the LDM for testing presence–absence associations in the microbiome

    Article • Bioinformatics, January 2021, Oxford University Press (OUP)

    Glen Satten

  8. Multisample adjusted U-statistics that account for confounding covariates

    Article • Statistics in Medicine, June 2018, Wiley

    Glen Satten

  9. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies

    Article • Genetic Epidemiology, May 2017, Wiley

    Glen Satten

  10. Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome

    Article • PLoS ONE, January 2017, PLOS

    Glen Satten

  11. Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls

    Article • PLoS Genetics, May 2016, PLOS

    Glen Satten

  12. PhredEM: A Phred-Score-Informed Genotype-Calling Approach for Next-Generation Sequencing Studies

    Article • March 2016, Cold Spring Harbor Laboratory Press

    Glen Satten

  13. Utilizing Population Controls in Rare-Variant Case-Parent Association Tests

    Article • The American Journal of Human Genetics, June 2014, Elsevier

    Glen Satten

  14. Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score

    Article • PLoS ONE, February 2014, PLOS

    Glen Satten

  15. Effects of maternal smokeless tobacco use on selected pregnancy outcomes in Alaska Native women: a case–control study

    Article • Acta Obstetricia Et Gynecologica Scandinavica, March 2013, Wiley

    Glen Satten

  16. Risk Assessment and Evaluation of Predictions

    Article • January 2013, Springer Science + Business Media

    Glen Satten

  17. A Permutation Procedure to Correct for Confounders in Case-Control Studies, Including Tests of Rare Variation

    Article • The American Journal of Human Genetics, August 2012, Elsevier

    Glen Satten

  18. Stratification-Score Matching Improves Correction for Confounding by Population Stratification in Case-Control Association Studies

    Article • Genetic Epidemiology, April 2012, Wiley

    Glen Satten

  19. Age-associated DNA methylation in pediatric populations

    Article • Genome Research, February 2012, Cold Spring Harbor Laboratory Press

    Glen Satten

  20. California Very Preterm Birth Study: design and characteristics of the population- and biospecimen bank-based nested case-control study

    Article • Paediatric and Perinatal Epidemiology, January 2012, Wiley

    Glen Satten

  21. Maternal smokeless tobacco use in Alaska Native women and singleton infant birth size

    Article • Acta Obstetricia Et Gynecologica Scandinavica, October 2011, Wiley

    Glen Satten

  22. Control for Confounding in Case-Control Studies Using the Stratification Score, a Retrospective Balancing Score

    Article • American Journal of Epidemiology, March 2011, Oxford University Press (OUP)

    Glen Satten

  23. A weighted accumulation test for associating rare genetic variation with quantitative phenotypes

    Article • BMC Proceedings, January 2011, Springer Science + Business Media

    Glen Satten

  24. Inverse Probability of Censoring Weighted U-statistics for Right-Censored Data with an Application to Testing Hypotheses

    Article • Scandinavian Journal of Statistics, November 2010, Wiley

    Glen Satten

  25. Percentage of Gestational Diabetes Mellitus Attributable to Overweight and Obesity

    Article • Obstetrical & Gynecological Survey, October 2010, Wolters Kluwer Health

    Glen Satten

  26. Microdeletions of 3q29 Confer High Risk for Schizophrenia

    Article • The American Journal of Human Genetics, August 2010, Elsevier

    Glen Satten

  27. Late Preterm Birth and Risk of Developing Asthma

    Article • The Journal of Pediatrics, July 2010, Elsevier

    Glen Satten

  28. Percentage of Gestational Diabetes Mellitus Attributable to Overweight and Obesity

    Article • American Journal of Public Health, June 2010, American Public Health Association

    Glen Satten

  29. Score-based adjustment for confounding by population stratification in genetic association studies

    Article • Genetic Epidemiology, February 2010, Wiley

    Glen Satten

  30. Fast and Robust Association Tests for Untyped SNPs in Case-Control Studies

    Article • Human Heredity, January 2010, Karger Publishers

    Glen Satten

  31. SNPs in CAST are associated with Parkinson disease: A confirmation study

    Article • American Journal of Medical Genetics Part B Neuropsychiatric Genetics, January 2010, Wiley

    Glen Satten

  32. A novel haplotype-sharing approach for genome-wide case-control association studies implicates the calpastatin gene in Parkinson's disease

    Article • Genetic Epidemiology, December 2009, Wiley

    Glen Satten

  33. A Regression-based Association Test for Case-control Studies that Uses Inferred Ancestral Haplotype Similarity

    Article • Annals of Human Genetics, September 2009, Wiley

    Glen Satten

  34. Effect of population stratification on the identification of significant single-nucleotide polymorphisms in genome-wide association studies

    Article • BMC Proceedings, January 2009, Springer Science + Business Media

    Glen Satten

  35. Genome-wide association analysis of rheumatoid arthritis data via haplotype sharing

    Article • BMC Proceedings, January 2009, Springer Science + Business Media

    Glen Satten

  36. MALDI-TOF mass spectrometry as a tool for differentiation of invasive and noninvasiveStreptococcus pyogenesisolates

    Article • FEMS Immunology & Medical Microbiology, August 2008, Oxford University Press (OUP)

    Glen Satten

  37. A Signed-Rank Test for Clustered Data

    Article • Biometrics, June 2008, Wiley

    Glen Satten

  38. Response to Lee et al.

    Article • The American Journal of Human Genetics, February 2008, Elsevier

    Glen Satten

  39. Robust estimation and testing of haplotype effects in case-control studies

    Article • Genetic Epidemiology, January 2008, Wiley

    Glen Satten

  40. A Simple and Improved Correction for Population Stratification in Case-Control Studies

    Article • The American Journal of Human Genetics, May 2007, Elsevier

    Glen Satten

  41. Statistical Models for Haplotype Sharing in Case-Parent Trio Data

    Article • Human Heredity, April 2007, Karger Publishers

    Glen Satten

  42. Inference on haplotype/disease association using parent-affected-child data: the projection conditional on parental haplotypes method

    Article • Genetic Epidemiology, April 2007, Wiley

    Glen Satten

  43. Association mapping via a class of haplotype-sharing statistics

    Article • BMC Proceedings, January 2007, Springer Science + Business Media

    Glen Satten

  44. Simple methods for assessing haplotype-environment interactions in case-only and case-control studies

    Article • Genetic Epidemiology, January 2007, Wiley

    Glen Satten

  45. Genetic Studies of a Cluster of Acute Lymphoblastic Leukemia Cases in Churchill County, Nevada

    Article • Environmental Health Perspectives, November 2006, Environmental Health Perspectives

    Glen Satten, Deborah French

  46. Investigating Childhood Leukemia in Churchill County, Nevada

    Article • Environmental Health Perspectives, November 2006, Environmental Health Perspectives

    Glen Satten

  47. Comment

    Article • Journal of the American Statistical Association, March 2006, Taylor & Francis

    Glen Satten

  48. Improved association analyses of disease subtypes in case-parent triads

    Article • Genetic Epidemiology, January 2006, Wiley

    Glen Satten

  49. Rank-Sum Tests for Clustered Data

    Article • Journal of the American Statistical Association, September 2005, Taylor & Francis

    Glen Satten

  50. Cross-Sectional Study

    Article • July 2005, Wiley

    Glen Satten

  51. Genetic Association Analysis Using Data from Triads and Unrelated Subjects

    Article • The American Journal of Human Genetics, April 2005, Elsevier

    Glen Satten

  52. Genetic Analysis Workshop 14: microsatellite and single-nucleotide polymorphism marker loci for genome-wide scans

    Article • BMC Genetics, January 2005, Springer Science + Business Media

    Dr Joan Ellen Bailey-Wilson, Glen Satten

  53. Robust testing of haplotype/disease association

    Article • BMC Genetics, January 2005, Springer Science + Business Media

    Glen Satten

  54. Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens

    Article • Bioinformatics, June 2004, Oxford University Press (OUP)

    Glen Satten

  55. An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments

    Article • Bioinformatics, January 2004, Oxford University Press (OUP)

    Glen Satten

  56. Comparison of prospective and retrospective methods for haplotype inference in case-control studies

    Article • Genetic Epidemiology, January 2004, Wiley

    Glen Satten

  57. How special is a 'special' interval: modeling departure from length-biased sampling in renewal processes

    Article • Biostatistics, January 2004, Oxford University Press (OUP)

    Glen Satten

  58. Inference on Haplotype Effects in Case-Control Studies Using Unphased Genotype Data

    Article • The American Journal of Human Genetics, December 2003, Elsevier

    Glen Satten

  59. Random error and undercounting in birth defects surveillance data: Implications for inference

    Article • Birth Defects Research Part A Clinical and Molecular Teratology, September 2003, Wiley

    Glen Satten

  60. Performance Characteristics of a New Less Sensitive HIV-1 Enzyme Immunoassay for Use in Estimating HIV Seroincidence

    Article • JAIDS Journal of Acquired Immune Deficiency Syndromes, August 2003, Wolters Kluwer Health

    Glen Satten

  61. HFE genotype and transferrin saturation in the United States

    Article • Genetics in Medicine, July 2003, Nature

    Glen Satten

  62. Estimation of Stage Occupation Probabilities in Multistage Models

    Article • April 2003, Taylor & Francis

    Glen Satten

  63. Marginal Analyses of Clustered Data When Cluster Size Is Informative

    Article • Biometrics, March 2003, Wiley

    Glen Satten

  64. Informative Missingness in Genetic Association Studies: Case-Parent Designs

    Article • The American Journal of Human Genetics, March 2003, Elsevier

    Glen Satten

  65. Bootstrap calibration of TRANSMIT for informative missingness of parental genotype data

    Article • BMC Genetics, January 2003, Springer Science + Business Media

    Glen Satten

  66. Marginal Analyses of Multistage Data

    Article • January 2003, Elsevier

    Glen Satten

  67. Estimation of Integrated Transition Hazards and Stage Occupation Probabilities for Non-Markov Systems Under Dependent Censoring

    Article • Biometrics, December 2002, Wiley

    Glen Satten

  68. HIV Seroincidence Among Patients at Clinics for Sexually Transmitted Diseases in Nine Cities in the United States

    Article • JAIDS Journal of Acquired Immune Deficiency Syndromes, April 2002, Wolters Kluwer Health

    Dr BHARAT S PAREKH, Glen Satten

  69. HIV seroconverting donors delay their return: screening test implications

    Article • Transfusion, April 2002, Wiley

    Glen Satten

  70. Subtype-specific Transmission Probabilities for Human Immunodeficiency Virus Type 1 among Injecting Drug Users in Bangkok, Thailand

    Article • American Journal of Epidemiology, January 2002, Oxford University Press (OUP)

    Glen Satten

  71. Midrank unification of rank tests for exact, tied, and censored data

    Article • Journal of Nonparametric Statistics, January 2002, Taylor & Francis

    Glen Satten

  72. Analysis of Dynamic Cohort Data

    Article • American Journal of Epidemiology, August 2001, Oxford University Press (OUP)

    Glen Satten

  73. Effect of interventions to control sexually transmitted disease on the incidence of HIV infection in female sex workers

    Article • AIDS, July 2001, Wolters Kluwer Health

    Glen Satten

  74. Evaluation of a Sensitive/Less-Sensitive Testing Algorithm Using the 3A11-LS Assay for Detecting Recent HIV Seroconversion among Individuals with HIV-1 Subtype B or E Infection in Thailand

    Article • AIDS Research and Human Retroviruses, March 2001, Mary Ann Liebert Inc

    Dr BHARAT S PAREKH, Glen Satten

  75. Nonparametric Maximum Likelihood Estimation for Competing Risks Survival Data Subject to Interval Censoring and Truncation

    Article • Biometrics, March 2001, Wiley

    Glen Satten

  76. Accounting for Unmeasured Population Substructure in Case-Control Studies of Genetic Association Using a Novel Latent-Class Model

    Article • The American Journal of Human Genetics, February 2001, Elsevier

    Glen Satten

  77. Marginal estimation for multi-stage models: waiting time distributions and competing risks analyses

    Article • Statistics in Medicine, January 2001, Wiley

    Glen Satten

  78. Nonparametric Estimation for the Three-Stage Irreversible Illness-Death Model

    Article • Biometrics, September 2000, Wiley

    Glen Satten

  79. The S-U algorithm for missing data problems

    Article • Computational Statistics, July 2000, Springer Science + Business Media

    Glen Satten

  80. Conditional and Unconditional Categorical Regression Models with Missing Covariates

    Article • Biometrics, June 2000, Wiley

    Glen Satten

  81. Repeat Screening for HIV: When to Test and Why

    Article • JAIDS Journal of Acquired Immune Deficiency Syndromes, April 2000, Wolters Kluwer Health

    Glen Satten

  82. Estimating the Extent of Tracking in Interval-Censored Chain-Of-Events Data

    Article • Biometrics, December 1999, Wiley

    Glen Satten

  83. Validating Marker-Based Incidence Estimates in Repeatedly Screened Populations

    Article • Biometrics, December 1999, Wiley

    Glen Satten

  84. Detection of Early HIV Infection and Estimation of Incidence Using a Sensitive/Less-Sensitive Enzyme Immunoassay Testing Strategy at Anonymous Counseling and Testing Sites in San Francisco

    Article • JAIDS Journal of Acquired Immune Deficiency Syndromes, December 1999, Wolters Kluwer Health

    Glen Satten

  85. Hold everything! Holding policies for protecting plasma supplies

    Article • Mathematical Biosciences, August 1999, Elsevier

    Glen Satten

  86. Fitting Semi-Markov Models to Interval-Censored Data with Unknown Initiation Times

    Article • Biometrics, June 1999, Wiley

    Glen Satten

  87. Discrete-Time Nonparametric Estimation for Semi-Markov Models of Chain-of-Events Data Subject to Interval Censoring and Truncation

    Article • Biometrics, June 1999, Wiley

    Glen Satten

  88. Kaplan–Meier representation of competing risk estimates

    Article • Statistics & Probability Letters, April 1999, Elsevier

    Glen Satten

  89. HIV Seroincidence and Risk Factors Among Patients Repeatedly Tested for HIV Attending Sexually Transmitted Disease Clinics in the United States, 1991 to 1996

    Article • Journal of Acquired Immune Deficiency Syndromes & Human Retrovirology, December 1998, Wolters Kluwer Health

    Glen Satten

  90. The incubation period to AIDS in injecting drug users estimated from prevalent cohort data, accounting for death prior to an AIDS diagnosis

    Article • AIDS, August 1998, Wolters Kluwer Health

    Glen Satten

  91. New Testing Strategy to Detect Early HIV-1 Infection for Use in Incidence Estimates and for Clinical and Prevention Purposes

    Article • JAMA, July 1998, American Medical Association (AMA)

    Glen Satten

  92. Declining Morbidity and Mortality among Patients with Advanced Human Immunodeficiency Virus Infection

    Article • New England Journal of Medicine, March 1998, New England Journal of Medicine (NEJM/MMS)

    Glen Satten

  93. Inference Based on Imputed Failure Times for the Proportional Hazards Model with Interval-Censored Data

    Article • Journal of the American Statistical Association, March 1998, JSTOR

    Glen Satten

  94. Time course of viremia and antibody seroconversion following human immunodeficiency virus exposure

    Article • The American Journal of Medicine, May 1997, Elsevier

    Glen Satten

  95. Late postnatal mother-to-child transmission of HIV-1 in Abidjan, Côte d'lvoire

    Article • The Lancet, April 1997, Elsevier

    Glen Satten

  96. Steady-state calculation of the risk of HIV infection from transfusion of screened blood from repeat donors

    Article • Mathematical Biosciences, April 1997, Elsevier

    Glen Satten

  97. Markov Chains With Measurement Error: Estimating the `True' Course of a Marker of the Progression of Human Immunodeficiency Virus Disease

    Article • Journal of the Royal Statistical Society Series C (Applied Statistics), January 1996, JSTOR

    Glen Satten

  98. Estimated Risk of Transmission of the Human Immunodeficiency Virus by Screened Blood in the United States

    Article • New England Journal of Medicine, December 1995, New England Journal of Medicine (NEJM/MMS)

    Glen Satten

  99. Upper and Lower Bound Distributions that Give Simultaneous Confidence Intervals for Quantiles

    Article • Journal of the American Statistical Association, June 1995, JSTOR

    Glen Satten

  100. Time course of detection of viral and serologic markers preceding human immunodeficiency virus type 1 seroconversion: implications for screening of blood and tissue donors

    Article • Transfusion, February 1995, Wiley

    Glen Satten

  101. Modelling the female-to-male per-act HIV transmission probability in an emerging epidemic in Asia

    Article • Statistics in Medicine, October 1994, Wiley

    Glen Satten

  102. Estimation of Incidence of HIV Infection Using Cross-Sectional Marker Surveys

    Article • Biometrics, September 1994, JSTOR

    Glen Satten

  103. Direct oral questions to blood donors: the impact on screening for human immunodeficiency virus

    Article • Transfusion, September 1994, Wiley

    Glen Satten

  104. Duration of time from onset of human immunodeficiency virus type 1 infectiousness to development of detectable antibody. The HIV Seroconversion Study Group

    Article • Transfusion, April 1994, Wiley

    Glen Satten

  105. Probability of female-to-male transmission of HIV-1 in Thailand

    Article • The Lancet, January 1994, Elsevier

    Glen Satten

  106. Conditional Regression Analysis of the Exposure-Disease Odds Ratio Using Known Probability-of-Exposure Values

    Article • Biometrics, June 1993, JSTOR

    Glen Satten

  107. [Backcalculation of HIV Infection Rates]: Comment

    Article • Statistical Science, May 1993, Institute of Mathematical Statistics

    Glen Satten

  108. Inferences About Exposure-Disease Associations Using Probability-of-Exposure Information

    Article • Journal of the American Statistical Association, March 1993, Taylor & Francis

    Glen Satten

  109. Inferences About Exposure-Disease Associations Using Probability-of- Exposure Information

    Article • Journal of the American Statistical Association, March 1993, JSTOR

    Glen Satten

  110. HIV Infection among Patients in U.S. Acute Care Hospitals

    Article • New England Journal of Medicine, August 1992, New England Journal of Medicine (NEJM/MMS)

    Glen Satten

  111. Continued Fraction Representation for Expected Cell Counts of a 2 x 2 Table: A Rapid and Exact Method for Conditional Maximum Likelihood Estimation

    Article • Biometrics, March 1990, JSTOR

    Glen Satten

  112. Sample size determination for pair-matched case-control studies where the goal is interval estimation of the odds ratio

    Article • Journal of Clinical Epidemiology, January 1990, Elsevier

    Glen Satten

  113. Critical phenomena in randomly stirred fluids: Correlation functions, equation of motion, and crossover behavior

    Article • May 1986, American Physical Society (APS)

    Glen Satten

  114. Critical phenomena in randomly stirred fluids

    Article • Physical Review Letters, July 1985, American Physical Society (APS)

    Glen Satten

  115. Modification of nonequilibrium fluctuations by interaction with surfaces

    Article • August 1982, American Physical Society (APS)

    Glen Satten