All Stories

  1. Interaction of C60 fullerenes with asymmetric and curved lipid membranes: a molecular dynamics study

    Article • Physical Chemistry Chemical Physics, January 2016, Royal Society of Chemistry

    Dr Semen O. Yesylevskyy

  2. Determination of mean and Gaussian curvatures of highly curved asymmetric lipid bilayers: the case study of the influence of cholesterol on the membrane shape

    Article • Physical Chemistry Chemical Physics, July 2014, Royal Society of Chemistry

    Dr Semen O. Yesylevskyy

  3. Determination of the shape and curvature of nonplanar lipid bilayers that are bent in a single plane in molecular dynamics simulations

    Article • Journal of Molecular Modeling, March 2014, Springer Science + Business Media

    Dr Semen O. Yesylevskyy

  4. Tuning excited-state proton transfer dynamics of a 3-hydroxychromone dye in supramolecular complexes via host–guest steric compatibility

    Article • Physical Chemistry Chemical Physics, January 2014, Royal Society of Chemistry

    Dr Semen O. Yesylevskyy, Professor Yves MELY

  5. Asymmetric structure and domain binding interfaces of human tyrosyl‐tRNA synthetase studied by molecular dynamics simulations

    Article • Journal of Molecular Recognition, January 2013, Wiley

    Dr Semen O. Yesylevskyy

  6. Efficiency of the monofunctionalized C60fullerenes as membrane targeting agents studied by all-atom molecular dynamics simulations

    Article • Molecular Membrane Biology, January 2013, Taylor & Francis

    Dr Semen O. Yesylevskyy, Dr fabien picaud

  7. Cholesterol Induces Uneven Curvature of Asymmetric Lipid Bilayers

    Article • The Scientific World JOURNAL, January 2013, Hindawi Publishing Corporation

    Dr Semen O. Yesylevskyy

  8. Conformational relaxations of human serum albumin studied by molecular dynamics simulations with pressure jumps

    Article • Biopolymers and Cell, November 2012, Institute of Molecular Biology and Genetics (NAS Ukraine)

    Dr Semen O. Yesylevskyy

  9. How cholesterol is distributed between monolayers in asymmetric lipid membranes

    Article • European Biophysics Journal, October 2012, Springer Science + Business Media

    Dr Semen O. Yesylevskyy

  10. Pteros: Fast and easy to use open‐source C++ library for molecular analysis

    Article • Journal of Computational Chemistry, April 2012, Wiley

    Dr Semen O. Yesylevskyy

  11. Interdomain compactization in human tyrosyl-tRNA synthetase studied by the hierarchical rotations technique

    Article • Biophysical Chemistry, March 2011, Elsevier

    Dr Semen O. Yesylevskyy

  12. Interfacial Behavior of Fluorescent Dyes

    Article • January 2011, Springer Science + Business Media

    Dr Semen O. Yesylevskyy

  13. Fluorescence Probing in Structurally Anisotropic Materials

    Article • January 2011, Springer Science + Business Media

    Dr Semen O. Yesylevskyy

  14. Approximation of super-ions for single-file diffusion of multiple ions through narrow pores

    Article • Physical Review E, November 2010, American Physical Society (APS)

    Dr Semen O. Yesylevskyy

  15. Identification of hierarchy of dynamic domains in proteins: comparison of HDWA and HCCP techniques

    Article • Biopolymers and Cell, July 2010, Institute of Molecular Biology and Genetics (NAS Ukraine)

    Dr Semen O. Yesylevskyy

  16. Polarizable Water Model for the Coarse-Grained MARTINI Force Field

    Article • PLoS Computational Biology, June 2010, PLOS

    Dr Semen O. Yesylevskyy

  17. Identifying the Hierarchy of Dynamic Domains in Proteins Using the Data of Molecular Dynamics Simulations

    Article • Protein and Peptide Letters, April 2010, Bentham Science Publishers

    Dr Semen O. Yesylevskyy

  18. New technique of identifying the hierarchy of dynamic domains in proteins using a method of molecular dynamics simulations

    Article • Biopolymers and Cell, March 2010, Institute of Molecular Biology and Genetics (NAS Ukraine)

    Dr Semen O. Yesylevskyy

  19. Simulation Studies of Peptide Induced Membrane Poration and Fusion

    Article • Biophysical Journal, January 2010, Elsevier

    Dr Semen O. Yesylevskyy

  20. Semi-quantitative model of the gating of KcsA ion channel. 1. Geometry and energetics of the gating

    Article • Biopolymers and Cell, September 2009, Institute of Molecular Biology and Genetics (NAS Ukraine)

    Dr Semen O. Yesylevskyy

  21. Theory of single-file multiparticle diffusion in narrow pores

    Article • Physical Review E, September 2009, American Physical Society (APS)

    Dr Semen O. Yesylevskyy

  22. Nanoscopic description of biomembrane electrostatics: results of molecular dynamics simulations and fluorescence probing

    Article • Chemistry and Physics of Lipids, August 2009, Elsevier

    Dr Semen O. Yesylevskyy

  23. Alternative Mechanisms for the Interaction of the Cell-Penetrating Peptides Penetratin and the TAT Peptide with Lipid Bilayers

    Article • Biophysical Journal, July 2009, Elsevier

    Dr Semen O. Yesylevskyy

  24. Fuzzy domains: New way of describing flexibility and interdependence of the protein domains

    Article • Proteins Structure Function and Bioinformatics, September 2008, Wiley

    Dr Semen O. Yesylevskyy

  25. Is the mobility of the pore walls and water molecules in the selectivity filter of KcsA channel functionally important?

    Article • Physical Chemistry Chemical Physics, January 2008, Royal Society of Chemistry

    Dr Semen O. Yesylevskyy

  26. ProtSqueeze: Simple and Effective Automated Tool for Setting up Membrane Protein Simulations.

    Article • ChemInform, November 2007, Wiley

    Dr Semen O. Yesylevskyy

  27. The blind search for the closed states of hinge‐bending proteins

    Article • Proteins Structure Function and Bioinformatics, November 2007, Wiley

    Dr Semen O. Yesylevskyy

  28. ProtSqueeze:  Simple and Effective Automated Tool for Setting up Membrane Protein Simulations

    Article • Journal of Chemical Information and Modeling, July 2007, American Chemical Society (ACS)

    Dr Semen O. Yesylevskyy

  29. The Change of Protein Intradomain Mobility on Ligand Binding: Is It a Commonly Observed Phenomenon?

    Article • Biophysical Journal, October 2006, Elsevier

    Dr Semen O. Yesylevskyy

  30. Dynamic Protein Domains: Identification, Interdependence, and Stability

    Article • Biophysical Journal, July 2006, Elsevier

    Dr Semen O. Yesylevskyy

  31. Hierarchical clustering of the correlation patterns: New method of domain identification in proteins

    Article • Biophysical Chemistry, January 2006, Elsevier

    Dr Semen O. Yesylevskyy

  32. Semi-empirical study of two-color fluorescent dyes based on 3-hydroxychromone

    Article • Journal of Molecular Structure THEOCHEM, November 2005, Elsevier

    Dr Semen O. Yesylevskyy

  33. Barrier-less knock-on conduction in ion channels: peculiarity or general mechanism?

    Article • Chemical Physics, June 2005, Elsevier

    Dr Semen O. Yesylevskyy

  34. Clustering Monte Carlo simulations of the hierarchical protein folding on a simple lattice model

    Article • Biopolymers and Cell, May 2004, Institute of Molecular Biology and Genetics (NAS Ukraine)

    Dr Semen O. Yesylevskyy

  35. Towards realistic description of collective motions in the lattice protein folding models

    Article • Biophysical Chemistry, April 2004, Elsevier

    Dr Semen O. Yesylevskyy

  36. Designability of lattice small-size protein models: is it sufficient to use the compact ground states?

    Article • Chemical Physics Letters, April 2004, Elsevier

    Dr Semen O. Yesylevskyy

  37. Quasi-particles in the selectivity filter can explain permeation in a channel with multiple occupancy

    Article • Physical Chemistry Chemical Physics, January 2004, Royal Society of Chemistry

    Dr Semen O. Yesylevskyy

  38. Hierarchy of Motions and Quasi-Particles in a Simplified Model of Potassium Channel Selectivity Filter

    Article • Journal of Biological Physics, January 2004, Springer Science + Business Media

    Dr Semen O. Yesylevskyy

  39. The Pore Helix Is Involved in Stabilizing the Open State of Inwardly Rectifying K+ Channels

    Article • Biophysical Journal, July 2003, Elsevier

    Dr Semen O. Yesylevskyy

  40. Modeling The Hierarchical Protein Folding Using Clustering Monte-Carlo Algorithm

    Article • Protein and Peptide Letters, December 2001, Bentham Science Publishers

    Dr Semen O. Yesylevskyy