All Stories

  1. An interaction graph approach to gain new insights into mechanisms that modulate cerebrovascular tone

    Article • Communications Biology, April 2024, Springer Science + Business Media

    Dr Soroush Safaei

  2. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, March 2024, Physiome Incorporated

    Dr Soroush Safaei

  3. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  4. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  5. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  6. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  7. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  8. Reproducibility Study on a PBPK Model of FcRn-Mediated Recycling for Large Molecules

    Article • Physiome, February 2024, Physiome Incorporated

    Dr Soroush Safaei

  9. Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • Physiome, June 2023, Physiome Incorporated

    Dr Soroush Safaei

  10. Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • Physiome, June 2023, Physiome Incorporated

    Dr Soroush Safaei

  11. Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • Physiome, June 2023, Physiome Incorporated

    Dr Soroush Safaei

  12. Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • Physiome, June 2023, Physiome Incorporated

    Dr Soroush Safaei

  13. Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • Physiome, June 2023, Physiome Incorporated

    Dr Soroush Safaei

  14. IDH and 1p19q Diagnosis in Diffuse Glioma from Preoperative MRI Using Artificial Intelligence

    Article • April 2023, Cold Spring Harbor Laboratory Press

    Dr Soroush Safaei

  15. From fetus to neonate: A review of cardiovascular modeling in early life

    Article • WIREs Mechanisms of Disease, March 2023, Wiley

    Dr Soroush Safaei

  16. Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte

    Article • Physiome, January 2023, Physiome Incorporated

    Dr Soroush Safaei

  17. Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte

    Article • Physiome, January 2023, Physiome Incorporated

    Dr Soroush Safaei

  18. Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit

    Article • Physiome, January 2023, Physiome Incorporated

    Dr Soroush Safaei

  19. Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit

    Article • Physiome, January 2023, Physiome Incorporated

    Dr Soroush Safaei

  20. An Image-Based Computational Model of the Newborn Cardiovascular System with Term and Preterm Applications

    Article • January 2023, Springer Science + Business Media

    Dr Soroush Safaei

  21. A modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • PLoS ONE, November 2022, PLOS

    Dr Soroush Safaei, David P Nickerson, Leyla Noroozbabaee

  22. In silico modeling for the hepatic circulation and transport: From the liver organ to lobules

    Article • WIREs Mechanisms of Disease, September 2022, Wiley

    Dr Soroush Safaei

  23. Computational models for generating microvascular structures: Investigations beyond medical imaging resolution

    Article • WIREs Mechanisms of Disease, July 2022, Wiley

    Dr Soroush Safaei

  24. Computational Modelling of Glucose Uptake in the Enterocyte

    Article • Physiome, January 2022, Physiome Incorporated

    Dr Soroush Safaei

  25. Computational Modelling of Glucose Uptake in the Enterocyte

    Article • Physiome, January 2022, Physiome Incorporated

    Dr Soroush Safaei

  26. A modular and reusable model of epithelial transport in the proximal convoluted tubule

    Article • November 2021, Cold Spring Harbor Laboratory Press

    Dr Soroush Safaei

  27. Hierarchical semantic composition of biosimulation models using bond graphs

    Article • PLoS Computational Biology, May 2021, PLOS

    Dr Soroush Safaei

  28. Adaptive constrained constructive optimisation for complex vascularisation processes

    Article • Scientific Reports, March 2021, Springer Science + Business Media

    Dr Soroush Safaei

  29. Hierarchical semantic composition of biosimulation models using bond graphs

    Article • March 2021, Cold Spring Harbor Laboratory Press

    Dr Soroush Safaei

  30. Computational Modelling of Glucose Uptake in the Enterocyte

    Article • October 2020, Physiome Incorporated

    Dr Soroush Safaei

  31. Computational Modelling of Glucose Uptake in the Enterocyte

    Article • October 2020, Physiome Incorporated

    Dr Soroush Safaei

  32. Computational Modelling of Glucose Uptake in the Enterocyte

    Article • October 2020, Physiome Incorporated

    Dr Soroush Safaei

  33. The Boron & De Weer Model of Intracellular pH Regulation

    Article • August 2020, Physiome Incorporated

    Dr Soroush Safaei

  34. The Boron & De Weer Model of Intracellular pH Regulation

    Article • August 2020, Physiome Incorporated

    Dr Soroush Safaei

  35. Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations

    Article • August 2020, Physiome Incorporated

    Dr Soroush Safaei

  36. Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations

    Article • August 2020, Physiome Incorporated

    Dr Soroush Safaei

  37. Modeling the hepatic arterial flow in living liver donor after left hepatectomy and postoperative boundary condition exploration

    Article • International Journal for Numerical Methods in Biomedical Engineering, December 2019, Wiley

    Dr Soroush Safaei

  38. Anatomically based simulation of hepatic perfusion in the human liver

    Article • International Journal for Numerical Methods in Biomedical Engineering, July 2019, Wiley

    Dr Soroush Safaei

  39. Computational Modeling of Glucose Uptake in the Enterocyte

    Article • Frontiers in Physiology, April 2019, Frontiers

    Dr Soroush Safaei

  40. Large expert-curated database for benchmarking document

    Article • Database, January 2019, Oxford University Press (OUP)

    Dr Daniel Prieto, Dr James A.L. Brown, Professor Amanda G Thrift, Docent Kutty Selva Nandakumar, Professor Miguel Viveiros, MD Diego A. Valera-Cornejo, Dr Soroush Safaei, Dr Carmen San Martín, Piero Carninci, Dr Florian Rehfeldt, Dr Yoichi Watanabe, Kazuki Ide, Mr Alvin Wong, Dr Adrian Meule, Dr Maurizio Petrelli, Dr Christine McGarrigle, Dr Tristan Reddan, Dr Nicola Roberts, Professor Stefan Lorkowski, Dr Cyrille Goarant, Dr Emma C Hobbs, Dr. Saurab Sharma, Ph.D., Dr Farid Rahimi, Prof. Iseult Lynch, Mirella Walker, Dr Luca Galluzzi, Sophie Ohlsson, Professor Tullio Florio, Dr Rabea A Gadelkareem, Dr Azubuike Christian Ukubuiwe, Prof Gajendra PS Raghava, Prof Jun Shen

  41. Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations

    Article • Frontiers in Physiology, March 2018, Frontiers

    Dr Soroush Safaei, Pablo Javier Blanco

  42. Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them

    Article • BioMedical Engineering OnLine, February 2018, Springer Science + Business Media

    Dr Soroush Safaei

  43. Meeting the multiscale challenge: representing physiology processes over ApiNATOMY circuits using bond graphs

    Article • Interface Focus, December 2017, Royal Society Publishing

    Dr Soroush Safaei

  44. Roadmap for cardiovascular circulation model

    Article • The Journal of Physiology, September 2016, Wiley

    Dr Soroush Safaei, Pablo Javier Blanco

  45. The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units

    Article • Frontiers in Physiology, February 2015, Frontiers

    Dr Soroush Safaei, David P Nickerson

  46. Using CellML with OpenCMISS to Simulate Multi-Scale Physiology

    Article • Frontiers in Bioengineering and Biotechnology, January 2015, Frontiers

    Dr Soroush Safaei

  47. OpenCMISS: A multi-physics & multi-scale computational infrastructure for the VPH/Physiome project

    Article • Progress in Biophysics and Molecular Biology, October 2011, Elsevier

    Dr Soroush Safaei, David P Nickerson, Vijay Rajagopal, Prof Alejandro F Frangi