All Stories

  1. BOSC 2019, the 20th annual Bioinformatics Open Source Conference

    Article • F1000Research, December 2019, Faculty of 1000, Ltd.

    Bastian Greshake, Dr Karsten Hokamp, Dr. Bastian Alexander Rieck

  2. The 2016 Bioinformatics Open Source Conference (BOSC)

    Article • F1000Research, October 2016, Faculty of 1000, Ltd.

    Dr Karsten Hokamp

  3. microRNA regulatory circuits in a mouse model of inherited retinal degeneration

    Article • Scientific Reports, August 2016, Nature

    Dr Karsten Hokamp

  4. The 2015 Bioinformatics Open Source Conference (BOSC 2015)

    Article • PLoS Computational Biology, February 2016, PLOS

    Dr Karsten Hokamp

  5. Re-engineering cellular physiology by rewiring high-level global regulatory genes

    Article • Scientific Reports, December 2015, Nature

    Dr Karsten Hokamp, Professor Charles J Dorman

  6. RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

    Article • PLoS Pathogens, November 2015, PLOS

    Dr Karsten Hokamp

  7. Genome-Wide Analysis of Phosphorylated PhoP Binding to Chromosomal DNA Reveals Several Novel Features of the PhoPR-Mediated Phosphate Limitation Response in Bacillus subtilis

    Article • Journal of Bacteriology, February 2015, ASM Journals

    Dr Karsten Hokamp, Kevin Devine

  8. Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

    Article • Frontiers in Immunology, February 2015, Frontiers

    Dr Karsten Hokamp

  9. Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools

    Article • January 2015, Springer Science + Business Media

    Dr Karsten Hokamp

  10. Telomeric ORFs (TLOs) in Candida spp. Encode Mediator Subunits That Regulate Distinct Virulence Traits

    Article • PLoS Genetics, October 2014, PLOS

    Prof Gary P Moran, Dr Karsten Hokamp

  11. Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

    Article • Frontiers in Immunology, October 2014, Frontiers

    Dr Karsten Hokamp

  12. RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

    Article • Frontiers in Immunology, August 2014, Frontiers

    Dr Karsten Hokamp, Dr Kevin Christophe Rue-Albrecht

  13. A Model System for Studying the Transcriptomic and Physiological Changes Associated with Mammalian Host-Adaptation by Leptospira interrogans Serovar Copenhageni

    Article • PLoS Pathogens, March 2014, PLOS

    Dr Karsten Hokamp

  14. A Transcription Factor Network Coordinates Attraction, Repulsion, and Adhesion Combinatorially to Control Motor Axon Pathway Selection

    Article • Neuron, March 2014, Elsevier

    Dr Karsten Hokamp

  15. An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

    Article • Cell Host & Microbe, December 2013, Elsevier

    Dr Karsten Hokamp

  16. Receptor-mediated recognition of mycobacterial pathogens

    Article • Cellular Microbiology, July 2013, Wiley

    Dr Karsten Hokamp

  17. The WalRK (YycFG) and σIRsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressedBacillus subtiliscells

    Article • Molecular Microbiology, November 2012, Wiley

    Dr Karsten Hokamp

  18. LeuO is a global regulator of gene expression inSalmonella entericaserovar Typhimurium

    Article • Molecular Microbiology, July 2012, Wiley

    Dr Karsten Hokamp, Professor Charles J Dorman

  19. Proteome-Wide Analysis of Functional Divergence in Bacteria: Exploring a Host of Ecological Adaptations

    Article • PLoS ONE, April 2012, PLOS

    Dr Karsten Hokamp

  20. High-resolution temporal analysis of global promoter activity in Bacillus subtilis

    Article • January 2012, Elsevier

    Dr Karsten Hokamp

  21. Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis

    Article • Veterinary Research, January 2012, Springer Science + Business Media

    Dr Karsten Hokamp

  22. Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes

    Article • BMC Genomics, January 2011, Springer Science + Business Media

    Dr Karsten Hokamp

  23. G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9

    Article • Cellular Immunology, January 2010, Elsevier

    Dr Robert E Hancock, Dr Karsten Hokamp

  24. Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS

    Article • PLoS Genetics, October 2009, PLOS

    Dr Karsten Hokamp, Professor Charles J Dorman

  25. The complex relationship of gene duplication and essentiality

    Article • Trends in Genetics, April 2009, Elsevier

    Dr Karsten Hokamp

  26. Transcriptome studies on Streptococcus pneumoniae, illustration of early response genes to THP-1 human macrophages

    Article • Genomics, January 2009, Elsevier

    Dr Karsten Hokamp

  27. The growth phase-dependent regulation of the pilus locus genes by two-component system TCS08 in Streptococcus pneumoniae

    Article • Microbial Pathogenesis, January 2009, Elsevier

    Dr Karsten Hokamp

  28. Correction: The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Dr Karsten Hokamp

  29. A common microRNA signature in mouse models of retinal degeneration

    Article • Experimental Eye Research, December 2008, Elsevier

    Dr Karsten Hokamp

  30. Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells

    Article • Canadian Journal of Microbiology, March 2008, Canadian Science Publishing

    Dr Karsten Hokamp

  31. Streptococcus pneumoniae early response genes to human lung epithelial cells

    Article • BMC Research Notes, January 2008, Springer Science + Business Media

    Dr Karsten Hokamp

  32. Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa

    Article • Genome Biology, January 2007, Springer Science + Business Media

    Dr Karsten Hokamp

  33. The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

    Article • BMC Genomics, January 2007, Springer Science + Business Media

    Dr Karsten Hokamp

  34. The 2R hypothesis and the human genome sequence

    Article • January 2003, Springer Science + Business Media

    Dr Karsten Hokamp

  35. Extensive genomic duplication during early chordate evolution

    Article • Nature Genetics, May 2002, Nature

    Dr Karsten Hokamp

  36. Characterization of protein C receptor expression in monocytes

    Article • British Journal of Haematology, November 2001, Wiley

    Dr Karsten Hokamp