All Stories

  1. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes

    Article • Current Biology, July 2018, Elsevier

    PhD Francois Sabot

  2. TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses

    Article • January 2018, Cold Spring Harbor Laboratory Press

    PhD Francois Sabot

  3. Comparison of two African rice species through a new pan-genomic approach on massive data

    Article • January 2018, Cold Spring Harbor Laboratory Press

    PhD Francois Sabot

  4. DuplicationDetector , a light weight tool for duplication detection using NGS data

    Article • Current Plant Biology, June 2017, Elsevier

    PhD Francois Sabot

  5. Evolutionary forces affecting synonymous variations in plant genomes

    Article • PLoS Genetics, May 2017, PLOS

    PhD Francois Sabot

  6. de novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of African rices

    Article • Genome Biology and Evolution, October 2016, Oxford University Press (OUP)

    PhD Francois Sabot

  7. LTRclassifier: A website for fast structural LTR retrotransposons classification in plants

    Article • Mobile Genetic Elements, September 2016, Taylor & Francis

    PhD Francois Sabot

  8. A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives

    Article • Molecular Ecology Resources, August 2016, Wiley

    PhD Francois Sabot

  9. miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

    Article • Rice, March 2016, Springer Science + Business Media

    PhD Francois Sabot

  10. TOGGLE: toolbox for generic NGS analyses

    Article • BMC Bioinformatics, November 2015, Springer Science + Business Media

    PhD Francois Sabot

  11. A knowledge-based molecular screen uncovers a broad-spectrumOsSWEET14resistance allele to bacterial blight from wild rice

    Article • The Plant Journal, November 2015, Wiley

    PhD Francois Sabot

  12. An extensive analysis of the African rice genetic diversity through a global genotyping

    Article • Theoretical and Applied Genetics, August 2014, Springer Science + Business Media

    PhD Francois Sabot

  13. Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies

    Article • Molecular Ecology Resources, April 2014, Wiley

    yves vigouroux, PhD Francois Sabot

  14. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)

    Article • Molecular Ecology, April 2014, Wiley

    PhD Francois Sabot

  15. DNA Methylation and Expression of the EgDEF1 Gene and Neighboring Retrotransposons in mantled Somaclonal Variants of Oil Palm

    Article • PLoS ONE, March 2014, PLOS

    PhD Francois Sabot

  16. Tos17 rice element: incomplete but effective

    Article • Mobile DNA, January 2014, Springer Science + Business Media

    PhD Francois Sabot

  17. Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.

    Article • PLoS ONE, March 2012, PLOS

    PhD Francois Sabot

  18. Methods and Software in NGS for TE Analysis

    Article • January 2012, Springer Science + Business Media

    PhD Francois Sabot

  19. Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data

    Article • The Plant Journal, March 2011, Wiley

    PhD Francois Sabot

  20. The genome of Theobroma cacao

    Article • Nature Genetics, December 2010, Nature

    PhD Francois Sabot

  21. Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus

    Article • Molecular Genetics and Genomics, October 2009, Springer Science + Business Media

    PhD Francois Sabot

  22. Identification of an active LTR retrotransposon in rice

    Article • The Plant Journal, June 2009, Wiley

    PhD Francois Sabot

  23. Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny

    Article • Nature Reviews Genetics, April 2009, Nature

    PhD Francois Sabot

  24. Genomics of Transposable Elements in the Triticeae

    Article • January 2009, Springer Science + Business Media

    PhD Francois Sabot

  25. Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae

    Article • BMC Evolutionary Biology, January 2009, Springer Science + Business Media

    PhD Francois Sabot

  26. A universal classification of eukaryotic transposable elements implemented in Repbase

    Article • Nature Reviews Genetics, May 2008, Nature

    PhD Francois Sabot

  27. Contrasted Microcolinearity and Gene Evolution Within a Homoeologous Region of Wheat and Barley Species

    Article • Journal of Molecular Evolution, February 2008, Springer Science + Business Media

    PhD Francois Sabot

  28. Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    PhD Francois Sabot

  29. A unified classification system for eukaryotic transposable elements

    Article • Nature Reviews Genetics, December 2007, Nature

    PhD Francois Sabot

  30. Life without GAG: The BARE-2 retrotransposon as a parasite's parasite

    Article • Gene, April 2007, Elsevier

    PhD Francois Sabot

  31. Template switching can create complex LTR retrotransposon insertions in Triticeae genomes

    Article • BMC Genomics, January 2007, Springer Science + Business Media

    PhD Francois Sabot

  32. Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome

    Article • Heredity, September 2006, Nature

    PhD Francois Sabot

  33. Morgane, a new LTR retrotransposon group, and its subfamilies in wheats

    Article • Genetica, September 2006, Springer Science + Business Media

    PhD Francois Sabot

  34. Retrotransposons: Metaparasites and Agents of Genome Evolution

    Article • Israel Journal of Ecology and Evolution, April 2006, Brill

    PhD Francois Sabot

  35. Advent of a New Retrotransposon Structure: The Long Form of the Veju Elements

    Article • Genetica, November 2005, Springer Science + Business Media

    PhD Francois Sabot

  36. Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

    Article • Molecular Genetics and Genomics, July 2005, Springer Science + Business Media

    PhD Francois Sabot

  37. Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops)

    Article • The Plant Cell, April 2005, American Society of Plant Biologists (ASPB)

    PhD Francois Sabot

  38. Sequencing of the Triticum monococcum Hardness locus reveals good microcolinearity with rice

    Article • Molecular Genetics and Genomics, May 2004, Springer Science + Business Media

    PhD Francois Sabot

  39. Detecting specific repeated sequences in large, complex genomes by using representative difference analysis and double-probe verification

    Article • Plant Molecular Biology Reporter, March 2004, Springer Science + Business Media

    PhD Francois Sabot

  40. Plant transposable elements, with an emphasis on grass species

    Article • Euphytica, February 2004, Springer Science + Business Media

    PhD Francois Sabot