All Stories

  1. TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data

    Article • F1000Research, April 2018, Faculty of 1000, Ltd.

    Tiago Chedraoui Silva, Pr Gianluca Bontempi, Benjamin Berman, Dr Tathi Malta

  2. TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

    Article • F1000Research, June 2016, Faculty of 1000, Ltd.

    Pr Gianluca Bontempi, Tiago Chedraoui Silva

  3. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

    Article • Nucleic Acids Research, December 2015, Oxford University Press (OUP)

    Pr Gianluca Bontempi, Tiago Chedraoui Silva

  4. Calibrating Probability with Undersampling for Unbalanced Classification

    Article • December 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  5. Integrated Reconfigurable Coherent Transmitter Driven by Binary Signals

    Article • IEEE Journal of Selected Topics in Quantum Electronics, November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  6. Credit card fraud detection and concept-drift adaptation with delayed supervised information

    Article • July 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  7. The bias–variance decomposition in profiled attacks

    Article • Journal of Cryptographic Engineering, June 2015, Springer Science + Business Media

    Pr Gianluca Bontempi

  8. Using shRNA experiments to validate gene regulatory networks

    Article • Genomics Data, June 2015, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  9. When is Undersampling Effective in Unbalanced Classification Tasks?

    Article • January 2015, Springer Science + Business Media

    Pr Gianluca Bontempi

  10. Template Attacks vs. Machine Learning Revisited (and the Curse of Dimensionality in Side-Channel Analysis)

    Article • January 2015, Springer Science + Business Media

    Pr Gianluca Bontempi

  11. An Approach for the Evaluation of Human Activities in Physical Therapy Scenarios

    Article • January 2015, Springer Science + Business Media

    Pr Gianluca Bontempi

  12. Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer

    Article • BioMed Research International, January 2015, Hindawi Publishing Corporation

    Pr Gianluca Bontempi

  13. A machine learning approach against a masked AES

    Article • Journal of Cryptographic Engineering, November 2014, Springer Science + Business Media

    Pr Gianluca Bontempi

  14. Learned lessons in credit card fraud detection from a practitioner perspective

    Article • Expert Systems with Applications, August 2014, Elsevier

    Pr Gianluca Bontempi

  15. A Monte Carlo strategy for structured multiple-step-ahead time series prediction

    Article • July 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  16. Using HDDT to avoid instances propagation in unbalanced and evolving data streams

    Article • July 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  17. Relevance of different prior knowledge sources for inferring gene interaction networks

    Article • Frontiers in Genetics, June 2014, Frontiers

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  18. Inference and validation of predictive gene networks from biomedical literature and gene expression data

    Article • Genomics, May 2014, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  19. Association between thePNPLA3(rs738409 C>G) variant and hepatocellular carcinoma: Evidence from a meta-analysis of individual participant data

    Article • Hepatology, April 2014, Wiley

    Pr Gianluca Bontempi

  20. Temporal profiling of cytokine-induced genes in pancreatic β-cells by meta-analysis and network inference

    Article • Genomics, April 2014, Elsevier

    Pr Gianluca Bontempi

  21. Power analysis attack: an approach based on machine learning

    Article • International Journal of Applied Cryptography, January 2014, Inderscience Publishers

    Pr Gianluca Bontempi

  22. A Machine Learning Approach Against a Masked AES

    Article • January 2014, Springer Science + Business Media

    Pr Gianluca Bontempi

  23. A Machine Learning Approach Against a Masked AES

    Article • January 2014, Springer Science + Business Media

    Pr Gianluca Bontempi

  24. On the Null Distribution of the Precision and Recall Curve

    Article • January 2014, Springer Science + Business Media

    Pr Gianluca Bontempi

  25. Information-Theoretic Gene Selection In Expression Data

    Article • December 2013, Wiley

    Pr Gianluca Bontempi

  26. Chapter 7: On the Integration of Prior Knowledge in the Inference of Regulatory Networks

    Article • December 2013, World Scientific Pub Co Pte Lt

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  27. Stability of feature selection algorithms for classification in high-throughput genomics datasets

    Article • November 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  28. Comparison and validation of genomic predictors for anticancer drug sensitivity

    Article • Journal of the American Medical Informatics Association, July 2013, Oxford University Press (OUP)

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  29. Une plate-forme technologique liée à la paralysie cérébrale

    Article • médecine/sciences, May 2013, EDP Sciences

    Pr Gianluca Bontempi

  30. Machine Learning Strategies for Time Series Forecasting

    Article • January 2013, Springer Science + Business Media

    Pr Gianluca Bontempi

  31. Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data

    Article • Frontiers in Genetics, January 2013, Frontiers

    Pr Gianluca Bontempi

  32. A Time Series Approach for Profiling Attack

    Article • January 2013, Springer Science + Business Media

    Pr Gianluca Bontempi

  33. Semi-Supervised Template Attack

    Article • January 2013, Springer Science + Business Media

    Pr Gianluca Bontempi

  34. Racing for Unbalanced Methods Selection

    Article • January 2013, Springer Science + Business Media

    Pr Gianluca Bontempi

  35. Prediction-Based Data Collection in Wireless Sensor Networks

    Article • December 2012, Taylor & Francis

    Pr Gianluca Bontempi

  36. D-peaks: A visual tool to display ChIP-seq peaks along the genome

    Article • Transcription, September 2012, Taylor & Francis

    Pr Gianluca Bontempi

  37. A review and comparison of strategies for multi-step ahead time series forecasting based on the NN5 forecasting competition

    Article • Expert Systems with Applications, June 2012, Elsevier

    Pr Gianluca Bontempi

  38. Adaptive local learning techniques for multiple-step-ahead wind speed forecasting

    Article • Electric Power Systems Research, February 2012, Elsevier

    Professor Alfredo Vaccaro, Pr Gianluca Bontempi

  39. Time Series Prediction for Energy-Efficient Wireless Sensors: Applications to Environmental Monitoring and Video Games

    Article • January 2012, Springer Science + Business Media

    Pr Gianluca Bontempi

  40. Recursive Multi-step Time Series Forecasting by Perturbing Data

    Article • December 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  41. Fourier spectral factor model for prediction of multidimensional signals

    Article • Signal Processing, September 2011, Elsevier

    Pr Gianluca Bontempi

  42. Conditionally dependent strategies for multiple-step-ahead prediction in local learning

    Article • International Journal of Forecasting, July 2011, Elsevier

    Pr Gianluca Bontempi

  43. Transcriptional Network Inference Based on Information Theory

    Article • April 2011, Wiley

    Pr Gianluca Bontempi

  44. Multiple-input multiple-output causal strategies for gene selection

    Article • BMC Bioinformatics, January 2011, Springer Science + Business Media

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  45. An Optimal Stopping Strategy for Online Calibration in Local Search

    Article • January 2011, Springer Science + Business Media

    Pr Gianluca Bontempi

  46. A Selecting-the-Best Method for Budgeted Model Selection

    Article • January 2011, Springer Science + Business Media

    Pr Gianluca Bontempi

  47. A dynamic programming strategy to balance exploration and exploitation in the bandit problem

    Article • Annals of Mathematics and Artificial Intelligence, June 2010, Springer Science + Business Media

    Pr Gianluca Bontempi

  48. Multiple-output modeling for multi-step-ahead time series forecasting

    Article • Neurocomputing, June 2010, Elsevier

    Pr Gianluca Bontempi

  49. Demonstrating principal component aggregation for distributed spatial pattern recognition

    Article • January 2010, ACM (Association for Computing Machinery)

    Pr Gianluca Bontempi

  50. A fuzzy gene expression-based computational approach improves breast cancer prognostication

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  51. Static and Dynamic Localization Techniques for Wireless Sensor Networks

    Article • October 2009, Springer Science + Business Media

    Pr Gianluca Bontempi

  52. Long-term prediction of time series by combining direct and MIMO strategies

    Article • June 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  53. Galectin 1 Proangiogenic and Promigratory Effects in the Hs683 Oligodendroglioma Model Are Partly Mediated through the Control of BEX2 Expression

    Article • Neoplasia, May 2009, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  54. An improved shrinkage estimator to infer regulatory networks with Gaussian graphical models

    Article • January 2009, ACM (Association for Computing Machinery)

    Pr Gianluca Bontempi

  55. Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in S. cerevisiae

    Article • January 2009, Springer Science + Business Media

    Pr Gianluca Bontempi

  56. On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information

    Article • EURASIP Journal on Bioinformatics and Systems Biology, January 2009, Springer Science + Business Media

    Pr Gianluca Bontempi

  57. Principal Component Aggregation for Energy-Efficient Information Extraction in Wireless Sensor Networks

    Article • December 2008, Taylor & Francis

    Pr Gianluca Bontempi

  58. Distributed Principal Component Analysis for Wireless Sensor Networks

    Article • Sensors, August 2008, MDPI AG

    Pr Gianluca Bontempi

  59. UNBS5162, a Novel Naphthalimide That Decreases CXCL Chemokine Expression in Experimental Prostate Cancers

    Article • Neoplasia, June 2008, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  60. Evidence of galectin-1 involvement in glioma chemoresistance☆

    Article • Toxicology and Applied Pharmacology, June 2008, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  61. Information-Theoretic Feature Selection in Microarray Data Using Variable Complementarity

    Article • IEEE Journal of Selected Topics in Signal Processing, June 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  62. Knocking Down Galectin 1 in Human Hs683 Glioblastoma Cells Impairs Both Angiogenesis and Endoplasmic Reticulum Stress Responses

    Article • Journal of Neuropathology & Experimental Neurology, May 2008, Oxford University Press (OUP)

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  63. New Routes from Minimal Approximation Error to Principal Components

    Article • Neural Processing Letters, January 2008, Springer Science + Business Media

    Pr Gianluca Bontempi

  64. Data-driven calibration of power conductors thermal model for overhead lines overload protection

    Article • International Journal of Reliability and Safety, January 2008, Inderscience Publishers

    Professor Alfredo Vaccaro, Pr Gianluca Bontempi

  65. Comparison of prognostic gene expression signatures for breast cancer

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  66. Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  67. Improving the Exploration Strategy in Bandit Algorithms

    Article • January 2008, Springer Science + Business Media

    Pr Gianluca Bontempi

  68. minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

    Article • BMC Bioinformatics, January 2008, Springer Science + Business Media

    Pr Gianluca Bontempi

  69. Machine learning techniques to identify putative genes involved in nitrogen catabolite repression in the yeast Saccharomyces cerevisiae

    Article • BMC Proceedings, January 2008, Springer Science + Business Media

    Pr Gianluca Bontempi

  70. Adaptive model selection for time series prediction in wireless sensor networks

    Article • Signal Processing, December 2007, Elsevier

    Pr Gianluca Bontempi

  71. 4-IBP, a σ1 Receptor Agonist, Decreases the Migration of Human Cancer Cells, Including Glioblastoma Cells, In Vitro and Sensitizes Them In Vitro and In Vivo to Cytotoxic Insults of Proapoptotic and Proautophagic Drugs

    Article • Neoplasia, May 2007, Elsevier

    Dr Benjamin Haibe-Kains, Pr Gianluca Bontempi

  72. A Blocking Strategy to Improve Gene Selection for Classification of Gene Expression Data

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, April 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Pr Gianluca Bontempi

  73. Information-Theoretic Inference of Large Transcriptional Regulatory Networks

    Article • EURASIP Journal on Bioinformatics and Systems Biology, January 2007, Springer Science + Business Media

    Pr Gianluca Bontempi

  74. Category-Based Audience Metrics for Web Site Content Improvement Using Ontologies and Page Classification

    Article • January 2006, Springer Science + Business Media

    Pr Gianluca Bontempi

  75. On the Use of Variable Complementarity for Feature Selection in Cancer Classification

    Article • January 2006, Springer Science + Business Media

    Pr Gianluca Bontempi

  76. Simulating continuous dynamical systems under conditions of uncertainty: the probability and the possibility approaches

    Article • January 2004, Springer Science + Business Media

    Pr Gianluca Bontempi

  77. Data-driven techniques for direct adaptive control: the lazy and the fuzzy approaches

    Article • Fuzzy Sets and Systems, May 2002, Elsevier

    Pr Gianluca Bontempi

  78. Enabling Multimedia QoS Control with Black-Box Modelling

    Article • January 2002, Springer Science + Business Media

    Pr Gianluca Bontempi

  79. The local paradigm for modeling and control: from neuro-fuzzy to lazy learning

    Article • Fuzzy Sets and Systems, July 2001, Elsevier

    Pr Gianluca Bontempi

  80. Lazy learning for local modelling and control design

    Article • International Journal of Control, January 1999, Taylor & Francis

    Pr Gianluca Bontempi

  81. Recursive lazy learning for modeling and control

    Article • January 1998, Springer Science + Business Media

    Pr Gianluca Bontempi

  82. Now comes the time to defuzzify neuro-fuzzy models

    Article • Fuzzy Sets and Systems, September 1997, Elsevier

    Pr Gianluca Bontempi

  83. A qualitative simulation approach for fuzzy dynamical models

    Article • ACM Transactions on Modeling and Computer Simulation, October 1994, ACM (Association for Computing Machinery)

    Pr Gianluca Bontempi, Prof. Andrea Bonarini

  84. Machine Learning for Automated Polyp Detection in Computed Tomography Colonography

    Article • IGI Global

    Pr Gianluca Bontempi

  85. Machine Learning Techniques for Decision Support in Anesthesia

    Article • Springer Science + Business Media

    Pr Gianluca Bontempi

  86. Combining Lazy Learning, Racing and Subsampling for Effective Feature Selection

    Article • Springer Science + Business Media

    Pr Gianluca Bontempi

  87. Biological Network Inference Using Redundancy Analysis

    Article • Springer Science + Business Media

    Pr Gianluca Bontempi

  88. Nested q-Partial Graphs for Genetic Network Inference from ”Small n, Large p” Microarray Data

    Article • Springer Science + Business Media

    Pr Gianluca Bontempi

  89. Machine Learning for Automated Polyp Detection in Computed Tomography Colonography

    Article • IGI Global

    Pr Gianluca Bontempi

  90. A Model-Based Relevance Estimation Approach for Feature Selection in Microarray Datasets

    Article • Springer Science + Business Media

    Pr Gianluca Bontempi