All Stories

  1. Adoption of MMPose, a general purpose pose estimation library, for animal tracking

    Article • April 2026, openRxiv

    Dr Vivek Kumar

  2. Optimizing Intermediate Representations: A Framework for Low-Cost, High-Accuracy Behavior Quantification

    Article • April 2026, openRxiv

    Dr Vivek Kumar

  3. Integrating supervised and unsupervised machine learning for behavior segmentation reveals latent frailty signatures and improves aging clocks in isogenic and outbred mice

    Article • March 2026, openRxiv

    Dr Vivek Kumar

  4. JAX Animal Behavior System (JABS), a genetics-informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse

    Article • eLife, March 2026, eLife

    Dr Vivek Kumar

  5. JAX Animal Behavior System (JABS): A genetics informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse

    Article • November 2025, eLife

    Dr Vivek Kumar

  6. Visual detection of seizures in mice using supervised machine learning

    Article • Cell Reports Methods, November 2025, Elsevier

    Dr Vivek Kumar

  7. JAX Animal Behavior System (JABS): A genetics informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse

    Article • July 2025, eLife

    Dr Vivek Kumar

  8. JAX Animal Behavior System (JABS): A genetics informed, end-to-end advanced behavioral phenotyping platform for the laboratory mouse

    Article • July 2025, eLife

    Dr Vivek Kumar

  9. Workshop Report—Heterogeneity and Successful Aging Part II: Approaches to Investigate Heterogeneity in Aging Research

    Article • The Journals of Gerontology Series A, April 2025, Oxford University Press (OUP)

    Dr Vivek Kumar

  10. Workshop Report—Heterogeneity and Successful Aging Part I: Heterogeneity in Aging—Challenges and Opportunities

    Article • The Journals of Gerontology Series A, March 2025, Oxford University Press (OUP)

    Dr Vivek Kumar

  11. Machine vision based frailty assessment for genetically diverse mice

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  12. Highly accurate and precise determination of mouse mass using computer vision

    Article • Patterns, August 2024, Elsevier

    Dr Vivek Kumar

  13. Visual detection of seizures in mice using supervised machine learning

    Article • May 2024, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  14. Highly Accurate and Precise Determination of Mouse Mass Using Computer Vision

    Article • December 2023, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  15. A new era in quantification of animal social behaviors

    Article • Neuroscience & Biobehavioral Reviews, December 2023, Elsevier

    Dr Vivek Kumar

  16. Cyfip2 allelic variation in C57BL/6J and C57BL/6NJ mice alters free‐choice ethanol drinking but not binge‐like drinking or wheel‐running activity

    Article • Alcoholism Clinical and Experimental Research, July 2023, Wiley

    Dr Vivek Kumar

  17. A high-throughput machine vision-based univariate scale for pain and analgesia in mice

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  18. A machine-vision-based frailty index for mice

    Article • Nature Aging, August 2022, Springer Science + Business Media

    Dr Vivek Kumar

  19. A missense mutation in Kcnc3 causes hippocampal learning deficits in mice

    Article • Proceedings of the National Academy of Sciences, July 2022, Proceedings of the National Academy of Sciences

    Dr Joseph S Takahashi, Dr Vivek Kumar

  20. Video based phenotyping platform for the laboratory mouse

    Article • January 2022, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  21. Stride-level analysis of mouse open field behavior using deep-learning-based pose estimation

    Article • Cell Reports, January 2022, Elsevier

    Dr Vivek Kumar

  22. High-throughput visual assessment of sleep stages in mice using machine learning

    Article • SLEEP, October 2021, Oxford University Press (OUP)

    Dr Vivek Kumar

  23. A machine vision based frailty index for mice

    Article • September 2021, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  24. Action detection using a neural network elucidates the genetics of mouse grooming behavior

    Article • eLife, March 2021, eLife

    Dr Vivek Kumar

  25. Gait-level analysis of mouse open field behavior using deep learning-based pose estimation

    Article • December 2020, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  26. Action detection using a neural network elucidates the genetics of mouse grooming behavior

    Article • October 2020, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  27. Machine learning-based automated phenotyping of inflammatory nocifensive behavior in mice

    Article • Molecular Pain, January 2020, SAGE Publications

    Dr Vivek Kumar

  28. Tissue-specific FAH deficiency alters sleep–wake patterns and results in chronic tyrosinemia in mice

    Article • Proceedings of the National Academy of Sciences, October 2019, Proceedings of the National Academy of Sciences

    Dr Vivek Kumar, Dr Joseph S Takahashi

  29. Robust mouse tracking in complex environments using neural networks

    Article • Communications Biology, March 2019, Springer Science + Business Media

    Dr Vivek Kumar

  30. Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis

    Article • Genome Research, January 2019, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  31. Robust Mouse Tracking in Complex Environments using Neural Networks

    Article • June 2018, Cold Spring Harbor Laboratory Press

    Dr Vivek Kumar

  32. In Vivo Single-Cell Detection of Metabolic Oscillations in Stem Cells

    Article • Cell Reports, January 2015, Elsevier

    Dr Vivek Kumar, Dr Joseph S Takahashi

  33. ChIP-seq and RNA-seq Methods to Study Circadian Control of Transcription in Mammals

    Article • January 2015, Elsevier

    Dr Vivek Kumar, Dr Joseph S Takahashi

  34. C57BL/6N Mutation in Cytoplasmic FMRP interacting protein 2 Regulates Cocaine Response

    Article • Science, December 2013, American Association for the Advancement of Science

    Dr Joseph S Takahashi, Dr Vivek Kumar

  35. Usf1 , a suppressor of the circadian Clock mutant, reveals the nature of the DNA-binding of the CLOCK:BMAL1 complex in mice

    Article • eLife, April 2013, eLife

    Dr Joseph S Takahashi, Dr Vivek Kumar

  36. Competing E3 Ubiquitin Ligases Govern Circadian Periodicity by Degradation of CRY in Nucleus and Cytoplasm

    Article • Cell, February 2013, Elsevier

    Dr Joseph S Takahashi, Dr Vivek Kumar

  37. Epidermal stem cells ride the circadian wave

    Article • Genome Biology, January 2013, Springer Science + Business Media

    Dr Joseph S Takahashi, Dr Vivek Kumar

  38. Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

    Article • Science, August 2012, American Association for the Advancement of Science

    Dr Vivek Kumar, Dr Joseph S Takahashi

  39. Brain and muscle Arnt-like protein-1 (BMAL1) controls circadian cell proliferation and susceptibility to UVB-induced DNA damage in the epidermis

    Article • Proceedings of the National Academy of Sciences, July 2012, Proceedings of the National Academy of Sciences

    Dr Vivek Kumar, Dr Joseph S Takahashi

  40. Second-generation high-throughput forward genetic screen in mice to isolate subtle behavioral mutants

    Article • Proceedings of the National Academy of Sciences, September 2011, Proceedings of the National Academy of Sciences

    Dr Joseph S Takahashi, Dr Vivek Kumar

  41. PARP around the Clock

    Article • Cell, September 2010, Elsevier

    Dr Joseph S Takahashi, Dr Vivek Kumar

  42. Genetic suppression of the circadian Clock mutation by the melatonin biosynthesis pathway

    Article • Proceedings of the National Academy of Sciences, April 2010, Proceedings of the National Academy of Sciences

    Dr Vivek Kumar, Dr Joseph S Takahashi

  43. Rhythmic PER Abundance Defines a Critical Nodal Point for Negative Feedback within the Circadian Clock Mechanism

    Article • Molecular Cell, November 2009, Elsevier

    Dr Joseph S Takahashi, Dr Vivek Kumar

  44. Circadian Clock Genes Contribute to the Regulation of Hair Follicle Cycling

    Article • PLoS Genetics, July 2009, PLOS

    Dr Joseph S Takahashi, Dr Vivek Kumar

  45. Searching for Genes Underlying Behavior: Lessons from Circadian Rhythms

    Article • Science, November 2008, American Association for the Advancement of Science

    Dr Vivek Kumar, Dr Joseph S Takahashi

  46. Circadian Mutant Overtime Reveals F-box Protein FBXL3 Regulation of Cryptochrome and Period Gene Expression

    Article • Cell, June 2007, Elsevier

    Dr Joseph S Takahashi, Dr Vivek Kumar

  47. Transcription Corepressor CtBP Is an NAD+-Regulated Dehydrogenase

    Article • Molecular Cell, October 2002, Elsevier

    Dr Vivek Kumar

  48. The POU Domain Factor Skin-1a Represses the Keratin 14 Promoter Independent of DNA Binding: A POSSIBLE ROLE FOR INTERACTIONS BETWEEN Skn-1a AND CREB-BINDING PROTEIN/p300

    Article • Journal of Biological Chemistry, June 2001, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Vivek Kumar

  49. The Rhodobacter Capsulatus Genome Project

    Article • January 1999, Springer Science + Business Media

    Dr Vivek Kumar

  50. Rhodobacter capsulatus SB1003

    Article • January 1998, Springer Science + Business Media

    Dr Vivek Kumar

  51. Bacterium genome sequence

    Article • Nature, June 1996, Springer Science + Business Media

    Dr Vivek Kumar