All Stories

  1. The role of flexibility and optimality in the prediction of intracellular fluxes of microbial central carbon metabolism

    Article • Molecular BioSystems, June 2014, Royal Society of Chemistry

    Dr Tunahan Cakir

  2. Systematic analysis of transcription‐level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain‐specific metabolic network

    Article • FEBS Open Bio, January 2014, Wiley

    Dr Tunahan Cakir

  3. Sparsity as Cellular Objective to Infer Directed Metabolic Networks from Steady-State Metabolome Data: A Theoretical Analysis

    Article • PLOS One, December 2013, PLOS

    Dr Tunahan Cakir

  4. Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Dr Tunahan Cakir

  5. Metabolic network discovery through reverse engineering of metabolome data

    Article • Metabolomics, February 2009, Springer Science + Business Media

    Dr Tunahan Cakir

  6. Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia

    Article • Theoretical Biology and Medical Modelling, December 2007, Springer Science + Business Media

    Dr Tunahan Cakir

  7. Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae

    Article • BMC Systems Biology, March 2007, Springer Science + Business Media

    Dr Tunahan Cakir

  8. Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches

    Article • Computational Biology and Chemistry, October 2006, Elsevier

    Dr Tunahan Cakir

  9. Integration of metabolome data with metabolic networks reveals reporter reactions

    Article • Molecular Systems Biology, September 2006, EMBO

    Dr Tunahan Cakir

  10. Metabolic pathway analysis of enzyme-deficient human red blood cells

    Article • Biosystems, December 2004, Elsevier

    Dr Tunahan Cakir

  11. Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production

    Article • Process Biochemistry, October 2004, Elsevier

    Dr Tunahan Cakir

  12. Transfer function approach in structured modeling of recombinant yeast utilizing starch

    Article • Process Biochemistry, June 2004, Elsevier

    Dr Tunahan Cakir

  13. Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks

    Article • Biotechnology and Bioengineering, March 2004, Wiley

    Dr Tunahan Cakir