All Stories

  1. Downscaling-Based Segmentation for Unresolved Images of Highly Heterogeneous Granular Porous Samples

    Article • Water Resources Research, April 2018, American Geophysical Union (AGU)

    Svyatoslav Korneev, Dr Timothy D Scheibe

  2. Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process

    Article • Frontiers in Microbiology, September 2017, Frontiers

    Dr Timothy D Scheibe

  3. Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies

    Article • Scientific Reports, September 2017, Springer Science + Business Media

    Dr Timothy D Scheibe, William Nelson

  4. Intercomparison of 3D pore-scale flow and solute transport simulation methods

    Article • Advances in Water Resources, September 2016, Elsevier

    Dr Timothy D Scheibe

  5. Hybrid multiscale simulation of a mixing-controlled reaction

    Article • Advances in Water Resources, September 2015, Elsevier

    Dr Timothy D Scheibe

  6. Pore-scale and multiscale numerical simulation of flow and transport in a laboratory-scale column

    Article • Water Resources Research, February 2015, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  7. A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations

    Article • Procedia Computer Science, January 2015, Elsevier

    Dr Timothy D Scheibe

  8. Flow Partitioning in Fully Saturated Soil Aggregates

    Article • Transport in Porous Media, March 2014, Springer Science + Business Media

    Dr Timothy D Scheibe

  9. An Analysis Platform for Multiscale Hydrogeologic Modeling with Emphasis on Hybrid Multiscale Methods

    Article • Ground Water, March 2014, Wiley

    Dr Timothy D Scheibe, Dr Kenneth C Carroll

  10. Flow and axial dispersion in a sinusoidal-walled tube: Effects of inertial and unsteady flows

    Article • Advances in Water Resources, December 2013, Elsevier

    Dr Timothy D Scheibe

  11. Model-based analysis of mixed uranium(VI) reduction by biotic and abiotic pathways during in situ bioremediation

    Article • Chemical Geology, October 2013, Elsevier

    Dr Timothy D Scheibe

  12. Pore-scale simulation of microbial growth using a genome-scale metabolic model: Implications for Darcy-scale reactive transport

    Article • Advances in Water Resources, September 2013, Elsevier

    Dr Timothy D Scheibe

  13. Development of a coupled thermo-hydro-mechanical model in discontinuous media for carbon sequestration

    Article • International Journal of Rock Mechanics and Mining Sciences, September 2013, Elsevier

    Dr Kenneth C Carroll, Dr Alain Bonneville, Dr Timothy D Scheibe

  14. Pore‐scale simulation of intragranular diffusion: Effects of incomplete mixing on macroscopic manifestations

    Article • Water Resources Research, July 2013, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  15. Direct numerical simulation of pore-scale flow in a bead pack: Comparison with magnetic resonance imaging observations

    Article • Advances in Water Resources, April 2013, Elsevier

    Dr Timothy D Scheibe

  16. Multiphysics simulations

    Article • The International Journal of High Performance Computing Applications, February 2013, SAGE Publications

    Dr Timothy D Scheibe, William Gropp

  17. A fluid pressure and deformation analysis for geological sequestration of carbon dioxide

    Article • Computers & Geosciences, September 2012, Elsevier

    Dr Alain Bonneville, Dr Timothy D Scheibe

  18. Dimension reduction numerical closure method for advection–diffusion-reaction systems

    Article • Advances in Water Resources, December 2011, Elsevier

    Dr Timothy D Scheibe

  19. Hybrid models of reactive transport in porous and fractured media

    Article • Advances in Water Resources, September 2011, Elsevier

    Dr Timothy D Scheibe

  20. Lessons Learned from Bacterial Transport Research at the South Oyster Site

    Article • Ground Water, June 2011, Wiley

    Dr Timothy D Scheibe

  21. Dissipative-particle-dynamics model of biofilm growth

    Article • Physical Review E, June 2011, American Physical Society (APS)

    Dr Timothy D Scheibe

  22. Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model

    Article • Journal of Contaminant Hydrology, March 2011, Elsevier

    Dr Derek R. Lovley, Dr Timothy D Scheibe

  23. Model-based analysis of the role of biological, hydrological and geochemical factors affecting uranium bioremediation

    Article • Biotechnology and Bioengineering, March 2011, Wiley

    Dr Timothy D Scheibe

  24. Simulating the heterogeneity in braided channel belt deposits: 1. A geometric-based methodology and code

    Article • Water Resources Research, April 2010, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  25. Simulating the heterogeneity in braided channel belt deposits: 2. Examples of results and comparison to natural deposits

    Article • Water Resources Research, April 2010, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  26. Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments

    Article • Journal of Contaminant Hydrology, March 2010, Elsevier

    Dr Derek R. Lovley, Dr Timothy D Scheibe

  27. A Component-Based Framework for Smoothed Particle Hydrodynamics Simulations of Reactive Fluid Flow in Porous Media

    Article • The International Journal of High Performance Computing Applications, January 2010, SAGE Publications

    Dr Timothy D Scheibe

  28. Effects of incomplete mixing on multicomponent reactive transport

    Article • Advances in Water Resources, November 2009, Elsevier

    Dr Timothy D Scheibe

  29. On breakdown of macroscopic models of mixing-controlled heterogeneous reactions in porous media

    Article • Advances in Water Resources, November 2009, Elsevier

    Dr Timothy D Scheibe

  30. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation

    Article • Microbial Biotechnology, February 2009, Wiley

    Dr Derek R. Lovley, Dr Timothy D Scheibe

  31. Pore-Scale Model for Reactive Transport and Biomass Growth

    Article • Journal of Porous Media, January 2009, Begell House

    Dr Timothy D Scheibe

  32. Mixing-induced precipitation: Experimental study and multiscale numerical analysis

    Article • Water Resources Research, June 2008, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  33. Hybrid Simulations of Reaction-Diffusion Systems in Porous Media

    Article • SIAM Journal on Scientific Computing, January 2008, Society for Industrial & Applied Mathematics (SIAM)

    Dr Timothy D Scheibe

  34. A novel approach to estimate iron distribution within different pore domains of structured media

    Article • Applied Geochemistry, December 2007, Elsevier

    Dr Timothy D Scheibe

  35. Particle methods for simulation of subsurface multiphase fluid flow and biogeochemical processes

    Article • Journal of Physics Conference Series, July 2007, Institute of Physics Publishing

    Dr Timothy D Scheibe

  36. Correlation between bacterial attachment rate coefficients and hydraulic conductivity and its effect on field-scale bacterial transport

    Article • Advances in Water Resources, June 2007, Elsevier

    Dr Timothy D Scheibe

  37. A smoothed particle hydrodynamics model for reactive transport and mineral precipitation in porous and fractured porous media

    Article • Water Resources Research, May 2007, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  38. Simulations of reactive transport and precipitation with smoothed particle hydrodynamics

    Article • Journal of Computational Physics, March 2007, Elsevier

    Dr Timothy D Scheibe

  39. Change of Collision Efficiency with Distance in Bacterial Transport Experiments

    Article • Ground Water, May 2006, Wiley

    Dr Timothy D Scheibe

  40. Transport and biogeochemical reaction of metals in a physically and chemically heterogeneous aquifer

    Article • Geosphere, January 2006, Geological Society of America

    Dr Timothy D Scheibe

  41. Conceptual and numerical model of uranium(VI) reductive immobilization in fractured subsurface sediments

    Article • Chemosphere, April 2005, Elsevier

    Dr Timothy D Scheibe

  42. Physical versus chemical effects on bacterial and bromide transport as determined from on site sediment column pulse experiments

    Article • Journal of Contaminant Hydrology, February 2005, Elsevier

    Dr Timothy D Scheibe

  43. Apparent Decreases in Colloid Deposition Rate Coefficients with Distance of Transport under Unfavorable Deposition Conditions:  A General Phenomenon

    Article • Environmental Science & Technology, November 2004, American Chemical Society (ACS)

    Dr Timothy D Scheibe

  44. A particle-based model of size or anion exclusion with application to microbial transport in porous media

    Article • Water Resources Research, April 2003, American Geophysical Union (AGU)

    Dr Timothy D Scheibe

  45. Relative Dominance of Physical versus Chemical Effects on the Transport of Adhesion-Deficient Bacteria in Intact Cores from South Oyster, Virginia

    Article • Environmental Science & Technology, March 2002, American Chemical Society (ACS)

    Dr Timothy D Scheibe

  46. Ferrographic Tracking of Bacterial Transport in the Field at the Narrow Channel Focus Area, Oyster, VA

    Article • Environmental Science & Technology, January 2001, American Chemical Society (ACS)

    Dr Timothy D Scheibe