All Stories

  1. Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm
  2. A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction
  3. Co-extraction of DNA and PLFA from soil samples
  4. Metals other than uranium affected microbial community composition in a historical uranium-mining site
  5. Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments
  6. Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors
  7. Genome Sequence of Halomonas sp. Strain KO116, an Ionic Liquid-Tolerant Marine Bacterium Isolated from a Lignin-Enriched Seawater Microcosm
  8. Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
  9. The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth
  10. High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater
  11. Microbial degradation of Deepwater Horizon oil
  12. Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania
  13. Characterization of Wastewater Treatment Plant Microbial Communities and the Effects of Carbon Sources on Diversity in Laboratory Models
  14. Temperature and injection water source influence microbial community structure in four Alaskan North Slope hydrocarbon reservoirs
  15. Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments
  16. Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil
  17. Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
  18. Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes
  19. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
  20. Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils
  21. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
  22. Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization
  23. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2
  24. Hexavalent Chromium Reduction under Fermentative Conditions with Lactate Stimulated Native Microbial Communities
  25. Changes in microbial dynamics during long-term decomposition in tropical forests
  26. Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico
  27. StressChip as a High-Throughput Tool for Assessing Microbial Community Responses to Environmental Stresses
  28. Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments
  29. Advances in monitoring environmental microbes
  30. Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution
  31. The SuperChip for microbial community structure, and function from all environments
  32. Distribution of hydrocarbons released during the 2010 MC252 oil spill in deep offshore waters
  33. Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill
  34. Correction: Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill
  35. High-throughput Isolation and Characterization of Untagged Membrane Protein Complexes: Outer Membrane Complexes of Desulfovibrio vulgaris
  36. Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill
  37. Glycoside Hydrolases from a targeted Compost Metagenome, activity-screening and functional characterization
  38. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
  39. Environmental biotechnology
  40. Systems biology approach to bioremediation
  41. Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
  42. Microbial Functional Gene Diversity with a Shift of Subsurface Redox Conditions duringIn SituUranium Reduction
  43. Application of phenotypic microarrays to environmental microbiology
  44. Microbial Community Succession during Lactate Amendment and Electron Acceptor Limitation Reveals a Predominance of Metal-Reducing Pelosinus spp.
  45. Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico
  46. Lignin-baited Bio-trap Beads to Search for Novel Lignin Degrading Microbes in Tropical Forest Soil
  47. Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass‐adapted bacterial consortia
  48. Functional Characterization of Crp/Fnr-Type Global Transcriptional Regulators in Desulfovibrio vulgaris Hildenborough
  49. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater
  50. Complete genome sequence of “Enterobacter lignolyticus” SCF1
  51. Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill
  52. Generalized Schemes for High-Throughput Manipulation of the Desulfovibrio vulgaris Genome
  53. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
  54. Use of immunomagnetic separation for the detection of Desulfovibrio vulgaris from environmental samples
  55. PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip
  56. Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History
  57. Dynamics of Microbial Community Composition and Function duringIn SituBioremediation of a Uranium-Contaminated Aquifer
  58. Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass
  59. Towards a Rigorous Network of Protein-Protein Interactions of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough
  60. How sulphate-reducing microorganisms cope with stress: lessons from systems biology
  61. Bioenergy feedstock‐specific enrichment of microbial populations during high‐solids thermophilic deconstruction
  62. Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil
  63. Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer
  64. Enrichment, isolation and characterization of fungi tolerant to 1-ethyl-3-methylimidazolium acetate
  65. Microfluidic fluorescence in situ hybridization and flow cytometry (μFlowFISH)
  66. 16S rRNA Gene Microarray Analysis of Microbial Communities in Ethanol-Stimulated Subsurface Sediment
  67. Complexity of Groundwater Contaminants at DOE Sites
  68. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
  69. Subcellular Localization of Proteins in the Anaerobic Sulfate Reducer Desulfovibrio vulgaris via SNAP-tag Labeling and Photoconversion
  70. Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators
  71. Adaptation of the Biolog Phenotype MicroArrayTM Technology to Profile the Obligate Anaerobe Geobacter metallireducens
  72. Development of Extraction Techniques for the Detection of Signature Lipids from Oil
  73. Comparative Metagenomics of Freshwater Microbial Communities
  74. Conservation of Modules but not Phenotype in Bacterial Response to Environmental Stress
  75. Revisiting Modes of energy generation in sulfate reducing bacteria
  76. GeoChip 3.0: A High Throughput Tool for Analyzing Microbial Community, Composition, Structure, and Functional Activity
  77. Development of a Model, Metal-reducing Microbial Community for a System Biology Level Assessment of Desulfovibrio vulgaris as part of a Community
  78. Effects of Nitrate Exposure on the Functional Structure of a Microbial Community in a Uranium-contaminated Aquifer
  79. Genetic Adaptation to Salt Stress in Experimental Evolution of Desulfovibrio vulgaris Hildenborough
  80. Microbial community changes during sustained Cr(VI) reduction at the 100H site in Hanford, WA
  81. High Throughput Identification, Purification and Structural Characterization of Water Soluble Protein Complexes in Desulfovibrio vulgaris
  82. Hydrogen peroxide‐induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough
  83. Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris
  84. Microbial Community Dynamics of Lactate Enriched Hanford Groundwaters
  85. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
  86. Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities
  87. Faculty Opinions recommendation of Translating metabolic exchange with imaging mass spectrometry.
  88. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation
  89. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
  90. Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community
  91. In Situ: Groundwater Bioremediation
  92. Cometabolic Bioremediation
  93. Biostimulation
  94. Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation
  95. GeoChip‐based analysis of functional microbial communities during the reoxidation of a bioreduced uranium‐contaminated aquifer
  96. Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity
  97. Faculty Opinions recommendation of Cultivation of fastidious bacteria by viability staining and micromanipulation in a soil substrate membrane system.
  98. Functional Gene Array-Based Analysis of Microbial Community Structure in Groundwaters with a Gradient of Contaminant Levels
  99. 4th Annual DOE-ERSP PI Meeting: Abstracts
  100. Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough
  101. Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE
  102. Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol‐tolerant Geobacillus strain
  103. Influences of Organic Carbon Supply Rate on Uranium Bioreduction in Initially Oxidizing, Contaminated Sediment
  104. In Situ Long-Term Reductive Bioimmobilization of Cr(VI) in Groundwater Using Hydrogen Release Compound
  105. Effects of Organic Carbon Supply Rates on Uranium Mobility in a Previously Bioreduced Contaminated Sediment
  106. Geophysical Monitoring of Hydrological and Biogeochemical Transformations Associated with Cr(VI) Bioremediation
  107. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness
  108. Analysis of a Ferric Uptake Regulator (Fur) Mutant of Desulfovibrio vulgaris Hildenborough
  109. Flux Analysis of Central Metabolic Pathways in Geobacter metallireducens during Reduction of Soluble Fe(III)-Nitrilotriacetic Acid
  110. This issue of Environmental Microbiology is dedicated to the memory of David. C. White
  111. Environmental Biotechnology. Second Edition. By Alan Scragg. Oxford and New York: Oxford University Press. $54.50 (paper). viii + 447 p; ill.; index. ISBN: 0‐19‐926867‐3. 2004.
  112. Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
  113. Temporal Transcriptomic Analysis as Desulfovibrio vulgaris Hildenborough Transitions into Stationary Phase during Electron Donor Depletion
  114. Using the stress response to monitor process control: pathways to more effective bioremediation
  115. Mesoscale Biotransformations of Uranium: Identifying Sites and Strategies where Reductive Immobilization is Practical
  116. Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis
  117. Environmental Whole-Genome Amplification To Access Microbial Populations in Contaminated Sediments
  118. Uranium Reduction in Sediments under Diffusion-Limited Transport of Organic Carbon
  119. Developments in Bioremediation of Soils and Sediments Polluted with Metals and Radionuclides: 2. Field Research on Bioremediation of Metals and Radionuclides
  120. Reoxidation of Bioreduced Uranium under Reducing Conditions
  121. Environmental biotechnology: A bioremediation perspective
  122. Comparison of Aerobic and Anaerobic Biotreatment of Municipal Solid Waste
  123. Bioremediation of Metals and Radionuclides: What It Is and How It Works (2nd Edition)
  124. Distribution of Chromium Contamination and Microbial Activity in Soil Aggregates
  125. In Situ Reduction of Chromium(VI) in Heavily Contaminated Soils through Organic Carbon Amendment
  126. Distribution of Chromium Contamination and Microbial Activity in Soil Aggregates
  127. SCFA lead lab technical assistance at Lawrence Berkeley National Laboratory: Baseline review of three groundwater plumes
  128. Technical assistance to Ohio closure sites; Technologies to address leachate from the on-site disposal facility at Fernald Environmental Management Project, Ohio
  129. SCFA lead lab technical assistance at Oak Ridge Y-12 nationalsecurity complex: Evaluation of treatment and characterizationalternatives of mixed waste soil and debris at disposal area remedialaction DARA solids storage facility (SSF)
  130. Technical assistance to Ohio closure sites; Recommendations toaddress contaminated soils, concrete, and corrective action managementunit/groundwater contamination at Ashtabula, Ohio
  131. Multiphase Modeling of Flow, Transport, and Biodegradation in a Mesoscale Landfill Bioreactor
  132. Chromium Diffusion and Reduction in Soil Aggregates
  133. Bioremediation Education Science and Technology (BEST) Program Annual Report 1999
  134. Bioremediation of petroleum hydrocarbo-contaminated soils, comprehensive report, December 1999
  135. Bioremediation of metals and radionuclides: What it is and How itWorks
  136. Case Study: Full Scale In Situ Bioremediation Demonstration of the Savannah River Site Integrated Demonstration Project
  137. D-area oil seepage basin bioventing optimization test plan
  138. Survival of Candida albicans and Pseudomonas aeruginosa in oil polluted tropical coastal waters1This paper was prepared in connection with work done under a subcontract to Contract No. DE-AC09-76SR00001 with the U.S. Department of Energy. By acceptance...
  139. Ecofunctional enzymes of microbial communities in ground water
  140. Use of conventional methods and whole cell hybridization to monitor the microbial response to triethylphosphate
  141. Test plan, the Czechowice Oil Refinery bioremediation demonstration of a process waste lagoon. Revision 1
  142. Microbial response to triepthylphosphate
  143. Test plan: the Czechowice Oil Refinery bioremediation demonstration of a process waste lagoon
  144. Final technology report for D-Area oil seepage basin bioventing optimization test, environmental restoration support
  145. Characterization and reclamation assessment for the central shops diesel storage facility at Savannah River Site
  146. Technology summary of the in situ bioremediation demonstration (methane biostimulation) via horizontal wells at the Savannah River Site Integrated Demonstration Project
  147. Biodegradation of Trichloroethylene by Alcaligenes eutrophus JMP134 in a Laboratory Scale Bioreactor
  148. Rapid screening for bacteria capable of degrading toxic organinc compounds
  149. Post-test evaluation of the geology, geochemistry, microbiology, and hydrology of the in situ air stripping demonstration site at the Savannah River Site
  150. Comparison of bacteria from deep subsurface sediment and adjacent groundwater
  151. Tropical Source Water
  152. The effect of vacuum pump oil on the chemotactic behavior of soil bacteria
  153. Survival and activity ofStreptococcus faecalis andEscherichia coli in tropical freshwater
  154. Autecology of Vibrio vulnificus and Vibrio parahaemolyticus in tropical waters
  155. Survival and distribution ofYersinia enterocolitica in a tropical rain forest stream
  156. Survival of Vibrio cholerae in treated and untreated rum distillery effluents
  157. Survival and activity of Streptococcus faecalis and Escherichia coli in petroleum-contaminated tropical marine waters
  158. Legionella in Puerto Rico cooling towers
  159. Fecal coliforms as indicators in tropical waters: A review
  160. Comparison of the in situ survival and activity ofKlebsiella pneumoniae andEscherichia coli in tropical marine environments
  161. Distribution and in situ survival and activity ofKlebsiella pneumoniae andEscherichia coli in a tropical rain forest watershed
  162. A Long-Term Study on the Population Biology of Crepidostomum cooperi (Trematoda: Allocreadidae) in the Burrowing Mayfly, Hexagenia limbata (Ephemeroptera)
  163. Chemotactic behavior ofAeromonas hydrophila
  164. A model for the density ofAeromonas hydrophila in Albemarle Sound, North Carolina
  165. Survival and distribution of aeromonas hydrophila in near-shore coastal waters of Puerto Rico receiving rum distillery effluent
  166. Chemotaxis ofAeromonas hydrophila to the surface mucus of fish
  167. Increased Resistance to Aeromonas hydrophila in Mice Experimentally Infected with Trypanosoma cruzi
  168. Agglutinating Antibody to Aeromonas hydrophila in Wild Largemouth Bass
  169. Peripheral Blood Components in Alligator mississippiensis
  170. Stress and Body Condition in a Population of Largemouth Bass: Implications for Red-Sore Disease
  171. Immunofluorescence of Aeromonas hydrophila as measured by fluorescence photometric microscopy
  172. Ecology ofAeromonas hydrophila in a South Carolina cooling reservoir
  173. Histopathology of red-sore disease (Aeromonas hydrophila) in naturally and experimentally infected largemouth bass Micropterus salmoides (Lacepede)
  174. ISOLATION OF Aeromonas hydrophila FROM THE AMERICAN ALLIGATOR, Alligator mississippiensis 1
  175. Impact of thermal loading and other water quality parameters on the epizootiology of Aeromonas hydrophila infections of centrarchids. [Etiology and host-pathogen relations in red-sore disease of largemouth bass]
  176. THE PARASITE FAUNA OF THE AMERICAN ALLIGATOR (Alligator mississippiensis) IN SOUTH CAROLINA 1
  177. Long Range Movement and Homing by Largemouth Bass (Micropterus salmoides) in a Thermally Altered Reservoir
  178. Effects of thermal effluent on body condition of largemouth bass
  179. Ultrastructure of Red‐Sore Lesions on Largemouth Bass (Micropterus salmoides): Association of the Ciliate Epistylis sp. and the Bacterium Aeromonas hydrophila*
  180. Impact of thermal loading and other water quality parameters on the epizootiology of red-sore disease in centrarchids. Progress report, December 1, 1977--November 30, 1978
  181. Observations on the ecology of Clinostomum marginatum in largemouth bass (Micropterus salmoides)
  182. Relationship of season, thermal loading and red‐sore disease with various haematological parameters in Micropterus salmoides
  183. Studies on the Population Biology of Two Larval Trematodes in the Amphipod, Hyalella azteca
  184. Parasitism and r- and K-selection
  185. A Method for Fixing and Staining Peritrich Ciliates
  186. Thermal Effluent and the Epizootiology of the Ciliate Epistylis and the Bacterium Aeromonas in Association with Centrarchid Fish
  187. Terry Hazen at the 2011 DOE JGI User Meeting