All Stories

  1. Less is more: slow-codon windows enhance eGFP mRNA resilience against RNA interference

    Article • Journal of The Royal Society Interface, March 2025, Royal Society Publishing

    Sophia Rudorf

  2. Point spread function estimation with computed wavefronts for deconvolution of hyperspectral imaging data

    Article • Scientific Reports, January 2025, Springer Science + Business Media

    Sophia Rudorf

  3. Synonymous rpsH variants: the common denominator in Escherichia coli adapting to ionizing radiation

    Article • NAR Genomics and Bioinformatics, July 2024, Oxford University Press (OUP)

    Sophia Rudorf

  4. Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation

    Article • PLoS Computational Biology, March 2024, PLOS

    Sophia Rudorf

  5. Utilizing high‐resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas

    Article • The Plant Journal, December 2023, Wiley

    Sophia Rudorf

  6. Computational analysis of protein synthesis, diffusion, and binding in compartmental biochips

    Article • Microbial Cell Factories, November 2023, Springer Science + Business Media

    Sophia Rudorf

  7. Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation

    Article • May 2023, Cold Spring Harbor Laboratory Press

    Sophia Rudorf

  8. Dominance analysis of competing protein assembly pathways

    Article • PLOS One, February 2023, PLOS

    Sophia Rudorf

  9. Tailoring Codon Usage to the Underlying Biology for Protein Expression Optimization

    Article • January 2022, Springer Science + Business Media

    Sophia Rudorf

  10. Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry

    Article • Nature Nanotechnology, July 2020, Springer Science + Business Media

    Sophia Rudorf

  11. Modellentwicklung und maschinelles Lernen erhöhen die Proteinausbeute

    Article • BIOspektrum, May 2020, Springer Science + Business Media

    Sophia Rudorf

  12. Publisher Correction: Optimizing the dynamics of protein expression

    Article • Scientific Reports, April 2020, Springer Science + Business Media

    Sophia Rudorf, PhD Andreas Reuter

  13. Efficiency of protein synthesis inhibition depends on tRNA and codon compositions

    Article • PLoS Computational Biology, August 2019, PLOS

    Sophia Rudorf

  14. Optimizing the dynamics of protein expression

    Article • Scientific Reports, May 2019, Springer Science + Business Media

    Sophia Rudorf, PhD Andreas Reuter

  15. Efficiency of protein synthesis inhibition depends on tRNA and codon compositions

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Sophia Rudorf

  16. Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis

    Article • Nucleic Acids Research, October 2018, Oxford University Press (OUP)

    Sophia Rudorf

  17. Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis

    Article • Nucleic Acids Research, August 2018, Oxford University Press (OUP)

    Sophia Rudorf

  18. Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage

    Article • PLOS One, August 2015, PLOS

    Sophia Rudorf

  19. Deducing the Kinetics of Protein Synthesis In Vivo from the Transition Rates Measured In Vitro

    Article • PLoS Computational Biology, October 2014, PLOS

    Sophia Rudorf

  20. Protein Synthesis by Ribosomes: Mapping In Vitro onto In Vivo Rates

    Article • Biophysical Journal, January 2014, Elsevier

    Sophia Rudorf

  21. Dependence of Protein Synthesis on TRNA Concentrations

    Article • Biophysical Journal, January 2013, Elsevier

    Sophia Rudorf

  22. Self-Assembly of Stable Monomolecular Nucleic Acid Lipid Particles with a Size of 30 nm

    Article • Journal of the American Chemical Society, July 2012, American Chemical Society (ACS)

    Sophia Rudorf

  23. Transient Phenomena in Gene Expression after Induction of Transcription

    Article • PLOS One, April 2012, PLOS

    Sophia Rudorf