All Stories

  1. Lacto-N-tetraose biosynthesis from lactose via metabolically rewired Escherichia coli

    Article • Metabolic Engineering, March 2026, Elsevier

    Shota Atsumi

  2. Microbial production of D-mannose and D-sedoheptulose with tunable ratios

    Article • Trends in Biotechnology, December 2025, Elsevier

    Shota Atsumi

  3. Retrofitting Escherichia coli for de novo production of rare L-sorbose from abundant D-glucose

    Article • Metabolic Engineering, November 2025, Elsevier

    Shota Atsumi

  4. Photosynthetic Biomanufacturing in Mechanically Robust, 3D Printed Hydrogels

    Article • ACS Synthetic Biology, October 2025, American Chemical Society (ACS)

    Shota Atsumi

  5. Recent advances in microbial production of rare sugars and steviols

    Article • Current Opinion in Biotechnology, August 2025, Elsevier

    Shota Atsumi

  6. Unleashing the innate ability of Escherichia coli to produce D-Allose

    Article • Metabolic Engineering, March 2025, Elsevier

    Shota Atsumi

  7. Efficient utilization of xylose requires CO2 fixation in Synechococcus elongatus PCC 7942

    Article • Metabolic Engineering, November 2024, Elsevier

    Shota Atsumi

  8. Recent advances in the microbial production of human milk oligosaccharides

    Article • Current Opinion in Food Science, June 2024, Elsevier

    Shota Atsumi

  9. Electrical-biological hybrid system for carbon efficient isobutanol production

    Article • Metabolic Engineering, November 2023, Elsevier

    Shota Atsumi

  10. Awakening the natural capability of psicose production in Escherichia coli

    Article • npj Science of Food, October 2023, Springer Science + Business Media

    Shota Atsumi

  11. Utilization of lignocellulosic hydrolysates for photomixotrophic chemical production in Synechococcus elongatus PCC 7942

    Article • Communications Biology, October 2023, Springer Science + Business Media

    Shota Atsumi

  12. Fluctuating pH for efficient photomixotrophic succinate production

    Article • Metabolic Engineering, September 2023, Elsevier

    Shota Atsumi

  13. Editorial: Insights into synthetic biology 2021: Novel developments, current challenges, and future perspectives

    Article • Frontiers in Bioengineering and Biotechnology, April 2023, Frontiers

    Shota Atsumi

  14. Microbial Production of Human Milk Oligosaccharides

    Article • Molecules, February 2023, MDPI AG

    Shota Atsumi

  15. Synthetic Biology Approaches for Improving Chemical Production in Cyanobacteria

    Article • Frontiers in Bioengineering and Biotechnology, March 2022, Frontiers

    Shota Atsumi

  16. Light-induced production of isobutanol and 3-methyl-1-butanol by metabolically engineered cyanobacteria

    Article • Microbial Cell Factories, January 2022, Springer Science + Business Media

    Shota Atsumi

  17. Adaptive laboratory evolution for improved tolerance of isobutyl acetate in Escherichia coli

    Article • Metabolic Engineering, January 2022, Elsevier

    Shota Atsumi

  18. Microbial production of human milk oligosaccharide lactodifucotetraose

    Article • Metabolic Engineering, July 2021, Elsevier

    Shota Atsumi

  19. Application of an engineered chromatic acclimation sensor for red-light-regulated gene expression in cyanobacteria

    Article • Algal Research, December 2019, Elsevier

    Shota Atsumi

  20. Nonphotosynthetic Biological CO2 Reduction

    Article • Biochemistry, November 2018, American Chemical Society (ACS)

    Shota Atsumi

  21. Metabolic engineering tools in model cyanobacteria

    Article • Metabolic Engineering, November 2018, Elsevier

    Shota Atsumi

  22. Electrical-biological hybrid system for CO2 reduction

    Article • Metabolic Engineering, May 2018, Elsevier

    Shota Atsumi

  23. Photomixotrophic chemical production in cyanobacteria

    Article • Current Opinion in Biotechnology, April 2018, Elsevier

    Shota Atsumi

  24. Systematic Approaches to Efficiently Produce 2,3-Butanediol in a Marine Cyanobacterium

    Article • ACS Synthetic Biology, August 2017, American Chemical Society (ACS)

    Shota Atsumi

  25. Carbon recycling by cyanobacteria: improving CO2 fixation through chemical production

    Article • FEMS Microbiology Letters, August 2017, Oxford University Press (OUP)

    Shota Atsumi

  26. Global metabolic rewiring for improved CO2 fixation and chemical production in cyanobacteria

    Article • Nature Communications, March 2017, Springer Science + Business Media

    Shota Atsumi

  27. Cyanobacterial metabolic engineering for biofuel and chemical production

    Article • Current Opinion in Chemical Biology, December 2016, Elsevier

    Shota Atsumi

  28. Biological conversion of gaseous alkenes to liquid chemicals

    Article • Metabolic Engineering, November 2016, Elsevier

    Shota Atsumi

  29. Engineering an Obligate Photoautotrophic Cyanobacterium to Utilize Glycerol for Growth and Chemical Production

    Article • ACS Synthetic Biology, September 2016, American Chemical Society (ACS)

    Shota Atsumi

  30. Cyanobacterial chemical production

    Article • Journal of Biotechnology, August 2016, Elsevier

    Shota Atsumi

  31. 2,3 Butanediol production in an obligate photoautotrophic cyanobacterium in dark conditions via diverse sugar consumption

    Article • Metabolic Engineering, July 2016, Elsevier

    Shota Atsumi

  32. Microbial production of scent and flavor compounds

    Article • Current Opinion in Biotechnology, February 2016, Elsevier

    Shota Atsumi

  33. Two-dimensional isobutyl acetate production pathways to improve carbon yield

    Article • Nature Communications, June 2015, Springer Science + Business Media

    Shota Atsumi

  34. Genome Engineering of the 2,3-Butanediol Biosynthetic Pathway for Tight Regulation in Cyanobacteria

    Article • ACS Synthetic Biology, May 2015, American Chemical Society (ACS)

    Shota Atsumi

  35. A carbon sink pathway increases carbon productivity in cyanobacteria

    Article • Metabolic Engineering, May 2015, Elsevier

    Shota Atsumi

  36. Isobutanol production from cellobionic acid in Escherichia coli

    Article • Microbial Cell Factories, April 2015, Springer Science + Business Media

    Shota Atsumi

  37. 2-Keto acids based biosynthesis pathways for renewable fuels and chemicals

    Article • Journal of Industrial Microbiology & Biotechnology, March 2015, Oxford University Press (OUP)

    Shota Atsumi

  38. Metabolic engineering for higher alcohol production

    Article • Metabolic Engineering, September 2014, Elsevier

    Shota Atsumi

  39. Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli

    Article • Metabolic Engineering, September 2014, Elsevier

    Shota Atsumi

  40. Engineering trophic diversity into photosynthetic microbes

    Article • Biofuels, May 2014, Taylor & Francis

    Shota Atsumi

  41. Metabolic design for cyanobacterial chemical synthesis

    Article • Photosynthesis Research, April 2014, Springer Science + Business Media

    Shota Atsumi

  42. Expanding ester biosynthesis in Escherichia coli

    Article • Nature Chemical Biology, March 2014, Springer Science + Business Media

    Shota Atsumi

  43. Combinatorial optimization of cyanobacterial 2,3-butanediol production

    Article • Metabolic Engineering, March 2014, Elsevier

    Shota Atsumi

  44. Isobutanol production from cellobiose in Escherichia coli

    Article • Applied Microbiology and Biotechnology, January 2014, Springer Science + Business Media

    Shota Atsumi

  45. Photosynthetic approaches to chemical biotechnology

    Article • Current Opinion in Biotechnology, December 2013, Elsevier

    Shota Atsumi

  46. Biological Production of 2‐Butanone in Escherichia coli

    Article • ChemSusChem, November 2013, Wiley

    Shota Atsumi

  47. Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light

    Article • Metabolic Engineering, November 2013, Elsevier

    Shota Atsumi

  48. Cyanobacterial Biofuel and Chemical Production for CO2Sequestration

    Article • August 2013, Wiley

    Shota Atsumi

  49. Synthetic Biology and Metabolic Engineering Approaches To Produce Biofuels

    Article • Chemical Reviews, March 2013, American Chemical Society (ACS)

    Shota Atsumi

  50. Cyanobacterial conversion of carbon dioxide to 2,3-butanediol

    Article • Proceedings of the National Academy of Sciences, January 2013, Proceedings of the National Academy of Sciences

    Shota Atsumi

  51. Cyanobacteria as a Platform for Biofuel Production

    Article • Frontiers in Bioengineering and Biotechnology, January 2013, Frontiers

    Shota Atsumi

  52. Engineering Synechococcus elongatus PCC 7942 for Continuous Growth under Diurnal Conditions

    Article • Applied and Environmental Microbiology, December 2012, ASM Journals

    Shota Atsumi

  53. Cyanobacterial biofuel production

    Article • Journal of Biotechnology, November 2012, Elsevier

    Shota Atsumi

  54. Alternative biofuel production in non-natural hosts

    Article • Current Opinion in Biotechnology, October 2012, Elsevier

    Shota Atsumi

  55. Synthetic Biology Approaches to Produce C3-C6 Alcohols from Microorganisms

    Article • Current Chemical Biology, March 2012, Bentham Science Publishers

    Shota Atsumi

  56. Synthetic Biology Approaches to Produce C3-C6 Alcohols from Microorganisms

    Article • Current Chemical Biology, March 2012, Bentham Science Publishers

    Shota Atsumi

  57. Isobutyraldehyde production from Escherichia coli by removing aldehyde reductase activity

    Article • Microbial Cell Factories, January 2012, Springer Science + Business Media

    Shota Atsumi

  58. Recent progress in synthetic biology for microbial production of C3–C10 alcohols

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Shota Atsumi

  59. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli

    Article • Molecular Systems Biology, December 2010, EMBO

    Shota Atsumi

  60. An agar gel membrane-PDMS hybrid microfluidic device for long term single cell dynamic study

    Article • Lab on a Chip, January 2010, Royal Society of Chemistry

    Shota Atsumi

  61. Synthetic Biology Guides Biofuel Production

    Article • Journal of Biomedicine and Biotechnology, January 2010, Hindawi Publishing Corporation

    Shota Atsumi

  62. Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde

    Article • Nature Biotechnology, November 2009, Springer Science + Business Media

    Shota Atsumi

  63. Acetolactate Synthase from Bacillus subtilis Serves as a 2-Ketoisovalerate Decarboxylase for Isobutanol Biosynthesis in Escherichia coli

    Article • Applied and Environmental Microbiology, August 2009, ASM Journals

    Shota Atsumi

  64. Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes

    Article • Applied Microbiology and Biotechnology, July 2009, Springer Science + Business Media

    Shota Atsumi

  65. Metabolic engineering of Escherichia coli for 1-butanol production

    Article • Metabolic Engineering, November 2008, Elsevier

    Shota Atsumi

  66. Directed Evolution of Methanococcus jannaschii Citramalate Synthase for Biosynthesis of 1-Propanol and 1-Butanol by Escherichia coli

    Article • Applied and Environmental Microbiology, October 2008, ASM Journals

    Shota Atsumi

  67. Metabolic engineering for advanced biofuels production from Escherichia coli

    Article • Current Opinion in Biotechnology, October 2008, Elsevier

    Shota Atsumi

  68. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels

    Article • Nature, January 2008, Springer Science + Business Media

    Shota Atsumi

  69. Engineered Synthetic Pathway for Isopropanol Production in Escherichia coli

    Article • Applied and Environmental Microbiology, October 2007, ASM Journals

    Shota Atsumi

  70. A synthetic phage λ regulatory circuit

    Article • Proceedings of the National Academy of Sciences, December 2006, Proceedings of the National Academy of Sciences

    Shota Atsumi

  71. Role of the lytic repressor in prophage induction of phage λ as analyzed by a module-replacement approach

    Article • Proceedings of the National Academy of Sciences, March 2006, Proceedings of the National Academy of Sciences

    Shota Atsumi

  72. Regulatory circuit design and evolution using phage λ

    Article • Genes & Development, September 2004, Cold Spring Harbor Laboratory Press

    Shota Atsumi

  73. Putative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNP

    Article • Nucleic Acids Research, March 2003, Oxford University Press (OUP)

    Shota Atsumi

  74. Selections for constituting new RNA-protein interactions in catalytic RNP

    Article • Nucleic Acids Research, January 2003, Oxford University Press (OUP)

    Shota Atsumi

  75. Design and development of a catalytic ribonucleoprotein

    Article • The EMBO Journal, October 2001, Springer Science + Business Media

    Shota Atsumi