All Stories

  1. Registration of the OhW (Oh43×W64A) Maize Recombinant Inbred Mapping Population

    Article • Journal of Plant Registrations, January 2016, American Society of Agronomy

    Professor Shawn Kaeppler

  2. Registration of the NyH (Ny821×H99) Maize Recombinant Inbred Mapping Population

    Article • Journal of Plant Registrations, January 2016, American Society of Agronomy

    Professor Shawn Kaeppler

  3. An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

    Article • The Plant Genome, January 2016, Crop Science Society of America

    Professor Shawn Kaeppler

  4. Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

    Article • The Plant Journal, November 2015, Wiley

    Professor Shawn Kaeppler

  5. Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis

    Article • G3 Genes Genomes Genetics, June 2015, Genetics Society of America

    Professor Shawn Kaeppler

  6. Autophagic Recycling Plays a Central Role in Maize Nitrogen Remobilization

    Article • The Plant Cell, May 2015, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  7. Defining window-boundaries for genomic analyses using smoothing spline techniques

    Article • Genetics Selection Evolution, April 2015, Springer Science + Business Media

    Professor Shawn Kaeppler

  8. Image analysis of anatomical traits in stalk transections of maize and other grasses

    Article • Plant Methods, April 2015, Springer Science + Business Media

    Professor Shawn Kaeppler

  9. Cell-wall properties contributing to improved deconstruction by alkaline pre-treatment and enzymatic hydrolysis in diverse maize ( Zea mays L.) lines

    Article • Journal of Experimental Botany, February 2015, Oxford University Press (OUP)

    Professor Shawn Kaeppler

  10. Genome-wide association analysis reveals new targets for carotenoid biofortification in maize

    Article • Theoretical and Applied Genetics, February 2015, Springer Science + Business Media

    Professor Shawn Kaeppler

  11. Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.)

    Article • Theoretical and Applied Genetics, January 2015, Springer Science + Business Media

    Professor Shawn Kaeppler

  12. Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

    Article • PLoS ONE, October 2014, PLOS

    Professor Shawn Kaeppler

  13. QTL mapping and phenotypic variation of root anatomical traits in maize (Zea mays L.)

    Article • Theoretical and Applied Genetics, October 2014, Springer Science + Business Media

    Professor Shawn Kaeppler

  14. QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.)

    Article • Theoretical and Applied Genetics, September 2014, Springer Science + Business Media

    Professor Shawn Kaeppler

  15. Nucleotide polymorphism and copy number variant detection using exome capture and next‐generation sequencing in the polyploid grass P anicum virgatum

    Article • The Plant Journal, August 2014, Wiley

    Professor Shawn Kaeppler

  16. Insights into the Effects of Long-Term Artificial Selection on Seed Size in Maize

    Article • Genetics, July 2014, Genetics Society of America

    Professor Shawn Kaeppler

  17. Consistent and Heritable Alterations of DNA Methylation Are Induced by Tissue Culture in Maize

    Article • Genetics, July 2014, Genetics Society of America

    Professor Shawn Kaeppler

  18. Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination

    Article • PLANT PHYSIOLOGY, April 2014, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  19. A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing

    Article • Scientific Reports, March 2014, Nature

    Professor Shawn Kaeppler

  20. Conserved Transcriptional Regulatory Programs Underlying Rice and Barley Germination

    Article • PLoS ONE, February 2014, PLOS

    Professor Shawn Kaeppler

  21. Correction: Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

    Article • PLoS ONE, January 2014, PLOS

    Professor Shawn Kaeppler

  22. Insights into the Maize Pan-Genome and Pan-Transcriptome

    Article • The Plant Cell, January 2014, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  23. Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass

    Article • The Plant Genome, January 2014, Crop Science Society of America

    Professor Shawn Kaeppler

  24. Formation of Heterotic Groups and Understanding Genetic Effects in a Provitamin A Biofortified Maize Breeding Program

    Article • Crop Science, January 2014, Crop Science Society of America

    Professor Shawn Kaeppler

  25. A Genome-Wide Scan for Evidence of Selection in a Maize Population Under Long-Term Artificial Selection for Ear Number

    Article • Genetics, December 2013, Genetics Society of America

    Professor Shawn Kaeppler

  26. The Genetic Architecture of Maize Stalk Strength

    Article • PLoS ONE, June 2013, PLOS

    Professor Shawn Kaeppler

  27. Breeding Maize for Lignocellulosic Biofuel Production

    Article • April 2013, Wiley

    Professor Shawn Kaeppler

  28. Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

    Article • PLoS ONE, April 2013, PLOS

    Professor Shawn Kaeppler

  29. Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

    Article • Genetics, February 2013, Genetics Society of America

    Professor Shawn Kaeppler

  30. Maize root growth angles become steeper under low N conditions

    Article • Field Crops Research, January 2013, Elsevier

    Professor Shawn Kaeppler

  31. Transcriptional and Metabolic Analysis of Senescence Induced by Preventing Pollination in Maize

    Article • PLANT PHYSIOLOGY, June 2012, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  32. Maize HapMap2 identifies extant variation from a genome in flux

    Article • Nature Genetics, June 2012, Nature

    Professor Shawn Kaeppler, Tanja Pyhäjärvi

  33. Comparative population genomics of maize domestication and improvement

    Article • Nature Genetics, June 2012, Nature

    Professor Shawn Kaeppler, Tanja Pyhäjärvi

  34. Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing

    Article • PLoS ONE, March 2012, PLOS

    Professor Shawn Kaeppler

  35. TCUP: A Novel hAT Transposon Active in Maize Tissue Culture

    Article • Frontiers in Plant Science, January 2012, Frontiers

    Professor Shawn Kaeppler

  36. The Scientific Grand Challenges of the 21st Century for the Crop Science Society of America

    Article • Crop Science, January 2012, Crop Science Society of America

    Professor Shawn Kaeppler

  37. A high-throughput core sampling device for the evaluation of maize stalk composition

    Article • Biotechnology for Biofuels, January 2012, Springer Science + Business Media

    Professor Shawn Kaeppler

  38. Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences

    Article • Genetica, July 2011, Springer Science + Business Media

    Professor Shawn Kaeppler

  39. B73-Mo17 Near-Isogenic Lines Demonstrate Dispersed Structural Variation in Maize

    Article • PLANT PHYSIOLOGY, June 2011, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  40. Genome-wide atlas of transcription during maize development

    Article • The Plant Journal, March 2011, Wiley

    Professor Shawn Kaeppler

  41. Heterosis: one boat at a time, or a rising tide?

    Article • New Phytologist, February 2011, Wiley

    Professor Shawn Kaeppler

  42. Natural Hybrids and Gene Flow between Upland and Lowland Switchgrass

    Article • Crop Science, January 2011, Crop Science Society of America

    Professor Shawn Kaeppler

  43. Genetic Diversity of a Maize Association Population with Restricted Phenology

    Article • Crop Science, January 2011, Crop Science Society of America

    Professor Shawn Kaeppler

  44. Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars

    Article • Theoretical and Applied Genetics, November 2010, Springer Science + Business Media

    Professor Shawn Kaeppler

  45. Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

    Article • Plant and Soil, November 2010, Springer Science + Business Media

    Professor Shawn Kaeppler

  46. Tissue Culture-Induced Novel Epialleles of a Myb Transcription Factor Encoded by pericarp color1 in Maize

    Article • Genetics, September 2010, Genetics Society of America

    Professor Shawn Kaeppler

  47. Loss-of-function of DELLA protein SLN1 activates GA signaling in barley aleurone

    Article • Acta Physiologiae Plantarum, February 2010, Springer Science + Business Media

    Professor Shawn Kaeppler

  48. Genetic Analysis of Cell Wall Traits Relevant to Cellulosic Ethanol Production in Maize ( L.)

    Article • Crop Science, January 2010, Crop Science Society of America

    Professor Shawn Kaeppler

  49. Chapter 3 Epigenetics

    Article • January 2008, Elsevier

    Professor Shawn Kaeppler

  50. Natural Variation for Alleles Under Epigenetic Control by the Maize Chromomethylase Zmet2

    Article • Genetics, August 2007, Genetics Society of America

    Professor Shawn Kaeppler

  51. Assessing the Efficiency of RNA Interference for Maize Functional Genomics

    Article • PLANT PHYSIOLOGY, February 2007, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  52. Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs

    Article • The Plant Journal, December 2006, Wiley

    Professor Shawn Kaeppler, Dr. Ueli Grossniklaus

  53. Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels

    Article • Theoretical and Applied Genetics, May 2006, Springer Science + Business Media

    Professor Shawn Kaeppler

  54. Mapping of QTLs for lateral root branching and length in maize (Zea mays L.) under differential phosphorus supply

    Article • Theoretical and Applied Genetics, July 2005, Springer Science + Business Media

    Professor Shawn Kaeppler

  55. Evolutionary Divergence of Monocot and Dicot Methyl-CpG-Binding Domain Proteins

    Article • PLANT PHYSIOLOGY, May 2005, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  56. Mapping of QTL controlling root hair length in maize (Zea mays L.) under phosphorus deficiency

    Article • Plant and Soil, March 2005, Springer Science + Business Media

    Professor Shawn Kaeppler

  57. Transgene-Induced RNA Interference as a Tool for Plant Functional Genomics

    Article • January 2005, Elsevier

    Professor Shawn Kaeppler

  58. Topsoil foraging and phosphorus acquisition efficiency in maize ( Zea mays )

    Article • Functional Plant Biology, January 2005, CSIRO Publishing

    Professor Shawn Kaeppler

  59. Genetic Control of Prolificacy and Related Traits in the Golden Glow Maize Population

    Article • Crop Science, January 2005, Crop Science Society of America

    Professor Shawn Kaeppler

  60. Genetic Control of Prolificacy and Related Traits in the Golden Glow Maize Population

    Article • Crop Science, January 2005, Crop Science Society of America

    Professor Shawn Kaeppler

  61. Comparative Analysis of SET Domain Proteins in Maize and Arabidopsis Reveals Multiple Duplications Preceding the Divergence of Monocots and Dicots

    Article • PLANT PHYSIOLOGY, May 2003, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  62. Variability of chromosomal DNA contents in maize ( Zea mays L.) inbred and hybrid lines

    Article • Planta, August 2002, Springer Science + Business Media

    Professor Shawn Kaeppler

  63. Sequence Relationships, Conserved Domains, and Expression Patterns for Maize Homologs of the Polycomb Group Genes E(z), esc, and E(Pc)

    Article • PLANT PHYSIOLOGY, April 2002, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  64. Maize Chromomethylase Zea methyltransferase2 Is Required for CpNpG Methylation

    Article • The Plant Cell, August 2001, American Society of Plant Biologists (ASPB)

    Professor Shawn Kaeppler

  65. Article • Plant and Soil, January 2001, Springer Science + Business Media

    Professor Shawn Kaeppler

  66. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases

    Article • Proceedings of the National Academy of Sciences, April 2000, Proceedings of the National Academy of Sciences

    Professor Shawn Kaeppler

  67. Lax leaf maize: cell wall composition and nutritional value

    Article • Journal of the Science of Food and Agriculture, January 2000, Wiley

    Professor Shawn Kaeppler

  68. Power analysis for quantitative trait locus mapping in populations derived by multiple backcrosses

    Article • Theoretical and Applied Genetics, September 1997, Springer Science + Business Media

    Professor Shawn Kaeppler

  69. Quantitative trait locus mapping using sets of near-isogenic lines: relative power comparisons and technical considerations

    Article • Theoretical and Applied Genetics, August 1997, Springer Science + Business Media

    Professor Shawn Kaeppler

  70. Genetic instability of plant tissue cultures: breakdown of normal controls.

    Article • Proceedings of the National Academy of Sciences, June 1994, Proceedings of the National Academy of Sciences

    Professor Shawn Kaeppler

  71. Use of near-isogenic lines derived by backcrossing or selfing to map qualitative traits

    Article • Theoretical and Applied Genetics, October 1993, Springer Science + Business Media

    Professor Shawn Kaeppler

  72. Tissue culture-induced DNA methylation variation in maize.

    Article • Proceedings of the National Academy of Sciences, October 1993, Proceedings of the National Academy of Sciences

    Professor Shawn Kaeppler

  73. DNA methylation and tissue culture-induced variation in plants

    Article • In Vitro Cellular & Developmental Biology - Plant, July 1993, Springer Science + Business Media

    Professor Shawn Kaeppler

  74. Chromatin, DNA Methylation, RNAi and Epigenetic Regulation

    Article • Springer Science + Business Media

    Professor Shawn Kaeppler