All Stories

  1. A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)

    Article • DNA Research, October 2022, Oxford University Press (OUP)

    Dr Shannon Lyn Johnson

  2. Complete Genome Sequences of the Soil Oxalotrophic Bacterium Cupriavidus oxalaticus Strain Ox1 and Its Derived mCherry-Tagged Strain

    Article • Microbiology Resource Announcements, September 2022, ASM Journals

    Dr Shannon Lyn Johnson

  3. High impact of bacterial predation on cyanobacteria in soil biocrusts

    Article • Nature Communications, August 2022, Springer Science + Business Media

    Dr Shannon Lyn Johnson

  4. Integration of Complete Plasmids Containing Bont Genes into Chromosomes of Clostridium parabotulinum, Clostridium sporogenes, and Clostridium argentinense

    Article • Toxins, July 2021, MDPI AG

    Dr Shannon Lyn Johnson

  5. Cryptosporulation inKurthiaspp. forces a rethinking of asporogenesis in Firmicutes

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Dr Shannon Lyn Johnson

  6. Genomic Characterization of Newly Completed Genomes of Botulinum Neurotoxin-Producing Species from Argentina, Australia, and Africa

    Article • Genome Biology and Evolution, March 2020, Oxford University Press (OUP)

    Dr Shannon Lyn Johnson

  7. Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius

    Article • Toxins, November 2019, MDPI AG

    Dr Shannon Lyn Johnson

  8. The evolution of a super-swarm of foot-and-mouth disease virus in cattle

    Article • PLOS One, April 2019, PLOS

    Dr Shannon Lyn Johnson

  9. Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate

    Article • Microbial Biotechnology, April 2019, Wiley

    Dr Shannon Lyn Johnson

  10. Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom

    Article • Microbiology Resource Announcements, September 2018, ASM Journals

    Dr Shannon Lyn Johnson, Dr Anand Kumar

  11. Correction for Johnson et al., “Complete Genome Sequences for 35 Biothreat Assay-Relevant Bacillus Species”

    Article • Genome Announcements, January 2018, ASM Journals

    Dr Shannon Lyn Johnson

  12. Erratum for Halpin et al., “Finished Whole-Genome Sequences of Clostridium butyricum Toxin Subtype E4 and Clostridium baratii Toxin Subtype F7 Strains”

    Article • Genome Announcements, September 2017, ASM Journals

    Dr Shannon Lyn Johnson

  13. Finished Whole-Genome Sequences of Clostridium butyricum Toxin Subtype E4 and Clostridium baratii Toxin Subtype F7 Strains

    Article • Genome Announcements, July 2017, ASM Journals

    Dr Shannon Lyn Johnson

  14. Finished Whole-Genome Sequences of Two Clostridium botulinum Type A(B) Isolates

    Article • Genome Announcements, May 2017, ASM Journals

    Dr Shannon Lyn Johnson

  15. Finished Whole-Genome Sequence of Clostridium argentinense Producing Botulinum Neurotoxin Type G

    Article • Genome Announcements, May 2017, ASM Journals

    Dr Shannon Lyn Johnson

  16. Ten Genome Sequences of Human and Livestock Isolates of Bacillus anthracis from the Country of Georgia

    Article • Genome Announcements, May 2017, ASM Journals

    Dr Shannon Lyn Johnson

  17. Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome

    Article • International Journal of Genomics, January 2017, Hindawi Publishing Corporation

    Dr Shannon Lyn Johnson

  18. Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin : TABLE 1 

    Article • Genome Announcements, November 2016, ASM Journals

    Dr Shannon Lyn Johnson

  19. Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6

    Article • Genome Announcements, June 2016, ASM Journals

    Dr Shannon Lyn Johnson

  20. Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258Klebsiella pneumoniaeStrains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones

    Article • Genome Biology and Evolution, June 2016, Oxford University Press (OUP)

    Dr Shannon Lyn Johnson

  21. Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor

    Article • Genome Announcements, April 2016, ASM Journals

    Dr Shannon Lyn Johnson

  22. Draft Genomes for Eight Burkholderia mallei Isolates from Turkey: TABLE 1 

    Article • Genome Announcements, January 2016, ASM Journals

    Dr Shannon Lyn Johnson

  23. Genome Sequence of a Chromium-Reducing Strain,Bacillus cereusS612

    Article • Genome Announcements, December 2015, ASM Journals

    Dr Shannon Lyn Johnson

  24. Finished Genome Assembly of Yersinia pestis EV76D and KIM 10v: TABLE 1

    Article • Genome Announcements, September 2015, ASM Journals

    Dr Shannon Lyn Johnson

  25. Genome Assemblies for 11 Yersinia pestis Strains Isolated in the Caucasus Region: TABLE 1 

    Article • Genome Announcements, September 2015, ASM Journals

    Dr Shannon Lyn Johnson

  26. Finished Genome Assembly of Warm Spring Isolate Francisella novicida DPG 3A-IS

    Article • Genome Announcements, September 2015, ASM Journals

    Dr Shannon Lyn Johnson

  27. Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir

    Article • Genome Announcements, August 2015, ASM Journals

    Dr Shannon Lyn Johnson

  28. Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent

    Article • Genome Announcements, August 2015, ASM Journals

    Dr Shannon Lyn Johnson

  29. Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species

    Article • Genome Announcements, June 2015, ASM Journals

    Dr Shannon Lyn Johnson

  30. Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27)

    Article • Genome Announcements, May 2015, ASM Journals

    Dr Shannon Lyn Johnson

  31. Genome Sequencing of 18 Francisella Strains To Aid in Assay Development and Testing: TABLE 1 

    Article • Genome Announcements, April 2015, ASM Journals

    Dr Shannon Lyn Johnson

  32. Thirty-Two Complete Genome Assemblies of NineYersiniaSpecies, IncludingY. pestis,Y. pseudotuberculosis, andY. enterocolitica: TABLE 1

    Article • Genome Announcements, April 2015, ASM Journals

    Dr Shannon Lyn Johnson

  33. Complete Genome Sequences for 35 Biothreat Assay-RelevantBacillusSpecies: TABLE 1

    Article • Genome Announcements, April 2015, ASM Journals

    Dr Shannon Lyn Johnson

  34. Complete Genome Sequences for 59BurkholderiaIsolates, Both Pathogenic and Near Neighbor: TABLE 1 

    Article • Genome Announcements, April 2015, ASM Journals

    Dr Shannon Lyn Johnson

  35. Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.)

    Article • Genome Announcements, April 2015, ASM Journals

    Dr Shannon Lyn Johnson

  36. Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity

    Article • PLOS One, March 2015, PLOS

    Dr Shannon Lyn Johnson

  37. Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets

    Article • Genome Announcements, March 2015, ASM Journals

    Dr Shannon Lyn Johnson

  38. Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes

    Article • Infection Genetics and Evolution, March 2015, Elsevier

    Dr Jeffrey T Foster, Dr Shannon Lyn Johnson

  39. Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei: TABLE 1

    Article • Genome Announcements, February 2015, ASM Journals

    Dr Derek S Sarovich, Dr Shannon Lyn Johnson

  40. Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes

    Article • Genome Announcements, January 2015, ASM Journals

    Dr Shannon Lyn Johnson

  41. Draft Genome Sequence of Enterobacter cloacae Strain S611

    Article • Genome Announcements, December 2014, ASM Journals

    Dr Shannon Lyn Johnson

  42. Whole-Genome Assemblies of 56 Burkholderia Species

    Article • Genome Announcements, November 2014, ASM Journals

    Dr Shannon Lyn Johnson

  43. Complete Genome Assembly of Staphylococcus epidermidis AmMS 205

    Article • Genome Announcements, November 2014, ASM Journals

    Dr Shannon Lyn Johnson

  44. Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  45. Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  46. Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  47. Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  48. Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  49. Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  50. Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  51. Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  52. Twenty Whole-Genome Bacillus sp. Assemblies

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  53. Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  54. Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247)

    Article • Genome Announcements, October 2014, ASM Journals

    Dr Shannon Lyn Johnson

  55. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  56. Whole-Genome Sequences of Nine Francisella Isolates

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  57. Draft Genome Assembly of Neisseria lactamica Type Strain A7515

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  58. Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  59. Genome Assembly of Serratia marcescens Type Strain ATCC 13880

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  60. Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  61. Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  62. Whole-Genome Sequence of Listeria monocytogenes Type Strain 53 XXIII

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  63. Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853)

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  64. Complete Genome Sequence of Stenotrophomonas maltophilia Type Strain 810-2 (ATCC 13637)

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  65. Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A  -Hemolytic Reference Strain

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  66. Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  67. Whole-Genome Sequences of 24 Brucella Strains

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  68. Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  69. Draft Genome Assembly of Delftia acidovorans Type Strain 2167

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  70. Genome Sequencing of 15 Clinical Vibrio Isolates, Including 13 Non-O1/Non-O139 Serogroup Strains

    Article • Genome Announcements, September 2014, ASM Journals

    Dr Shannon Lyn Johnson

  71. Draft Genome Assembly of Acinetobacter baumannii ATCC 19606

    Article • Genome Announcements, August 2014, ASM Journals

    Dr Shannon Lyn Johnson

  72. Genome Sequences of Two Carbapenemase-Resistant Klebsiella pneumoniae ST258 Isolates

    Article • Genome Announcements, June 2014, ASM Journals

    Dr Marcelo Tolmasky, Dr Shannon Lyn Johnson

  73. The Path to Triacylglyceride Obesity in the sta6 Strain of Chlamydomonas reinhardtii

    Article • Eukaryotic Cell, February 2014, ASM Journals

    Dr Shannon Lyn Johnson

  74. Nucleic acid sequencing for characterizing infectious and/or novel agents in complex samples

    Article • January 2014, Elsevier

    Dr Shannon Lyn Johnson

  75. Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat

    Article • Genome Announcements, December 2013, ASM Journals

    Dr Shannon Lyn Johnson

  76. Draft Genome Sequences of Two Alginate-Overproducing Variants of Pseudomonas aeruginosa, PAO1-VE2 and PAO1-VE13

    Article • Genome Announcements, December 2013, ASM Journals

    Dr Shannon Lyn Johnson

  77. Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789

    Article • Genome Announcements, December 2013, ASM Journals

    Dr Shannon Lyn Johnson

  78. Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant

    Article • The Plant Cell, November 2013, American Society of Plant Biologists (ASPB)

    Dr Shannon Lyn Johnson

  79. Draft Genome Sequence of a Stable Mucoid Strain of Pseudomonas aeruginosa PAO581 with a mucA25 Mutation

    Article • Genome Announcements, October 2013, ASM Journals

    Dr Shannon Lyn Johnson

  80. Draft Genome Sequence of a Mucoid Isolate of Pseudomonas aeruginosa Strain C7447m from a Patient with Cystic Fibrosis

    Article • Genome Announcements, October 2013, ASM Journals

    Dr Shannon Lyn Johnson

  81. Complete Genome Sequence of the Encephalomyelitic Burkholderia pseudomallei Strain MSHR305

    Article • Genome Announcements, August 2013, ASM Journals

    Dr Shannon Lyn Johnson

  82. Characterization of TEM-1 β-Lactamase-Producing Kingella kingae Clinical Isolates

    Article • Antimicrobial Agents and Chemotherapy, June 2013, ASM Journals

    Dr Shannon Lyn Johnson

  83. Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360)

    Article • Genome Announcements, May 2013, ASM Journals

    Dr Marcelo Tolmasky, Dr Shannon Lyn Johnson

  84. Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

    Article • Genome Research, March 2013, Cold Spring Harbor Laboratory Press

    Dr Shannon Lyn Johnson

  85. Ammonia-oxidizing archaea and bacteria are structured by geography in biological soil crusts across North American arid lands

    Article • Ecological Processes, January 2013, Springer Science + Business Media

    Dr Shannon Lyn Johnson

  86. Draft Genome Sequence for Pseudomonas aeruginosa Strain PAO579, a Mucoid Derivative of PAO381

    Article • Journal of Bacteriology, November 2012, ASM Journals

    Dr Shannon Lyn Johnson

  87. Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2

    Article • PLOS One, November 2012, PLOS

    Dr Jason P Folster, Dr Shannon Lyn Johnson

  88. Genome Sequence of Kingella kingae Septic Arthritis Isolate PYKK081

    Article • Journal of Bacteriology, May 2012, ASM Journals

    Dr Shannon Lyn Johnson

  89. Increased temperature and altered summer precipitation have differential effects on biological soil crusts in a dryland ecosystem

    Article • Global Change Biology, May 2012, Wiley

    Dr Shannon Lyn Johnson

  90. Three Acyltransferases and Nitrogen-responsive Regulator Are Implicated in Nitrogen Starvation-induced Triacylglycerol Accumulation in Chlamydomonas

    Article • Journal of Biological Chemistry, March 2012, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Shannon Lyn Johnson

  91. φX216, a P2-like bacteriophage with broad Burkholderia pseudomallei and B. mallei strain infectivity

    Article • BMC Microbiology, January 2012, Springer Science + Business Media

    Dr Shannon Lyn Johnson

  92. Response of Biological Soil Crust Diazotrophs to Season, Altered Summer Precipitation, and Year-Round Increased Temperature in an Arid Grassland of the Colorado Plateau, USA

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Dr Shannon Lyn Johnson

  93. Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands

    Article • The ISME Journal, November 2011, Nature

    Dr Shannon Lyn Johnson

  94. Genome of the Cyanobacterium Microcoleus vaginatusFGP-2, a Photosynthetic Ecosystem Engineer of Arid Land Soil Biocrusts Worldwide

    Article • Journal of Bacteriology, June 2011, ASM Journals

    Dr Shannon Lyn Johnson

  95. Genomic Signatures of Strain Selection and Enhancement in Bacillus atrophaeus var. globigii, a Historical Biowarfare Simulant

    Article • PLOS One, March 2011, PLOS

    Dr Shannon Lyn Johnson

  96. Archaeal populations in biological soil crusts from arid lands in North America

    Article • Soil Biology and Biochemistry, October 2009, Elsevier

    Dr Shannon Lyn Johnson

  97. Export of nitrogenous compounds due to incomplete cycling within biological soil crusts of arid lands

    Article • Environmental Microbiology, March 2007, Wiley

    Dr Shannon Lyn Johnson

  98. Relevance of ammonium oxidation within biological soil crust communities

    Article • Environmental Microbiology, January 2005, Wiley

    Dr Shannon Lyn Johnson

  99. Small-Scale Vertical Distribution of Bacterial Biomass and Diversity in Biological Soil Crusts from Arid Lands in the Colorado Plateau

    Article • Microbial Ecology, November 2003, Springer Science + Business Media

    Dr Shannon Lyn Johnson