All Stories

  1. Higher-order interactions in auxotroph communities enhance their resilience to resource fluctuations
  2. Resource ratio fluctuations drive the evolution of microbial metabolic strategies
  3. ML-Guided GWAS Reveals Genetic Architectures for MASLD for Overweight and Lean Individuals in the All of Us Cohort
  4. Single-cell heterogeneity in interferon induction potential is heritable and governed by variation in cell state
  5. Protein Language Models Capture Structural and Functional Epistasis in a Zero-Shot Setting
  6. Coarse-grained model of serial dilution dynamics in synthetic human gut microbiome
  7. Evolutionary chemical learning in dimerization networks
  8. Predicting metabolite response to dietary intervention using deep learning
  9. noSpliceVelo infers gene expression dynamics without separating unspliced and spliced transcripts
  10. noSpliceVelo infers gene expression dynamics without separating unspliced and spliced transcripts
  11. DR-BERT: A protein language model to annotate disordered regions
  12. Fitness advantage of sequential metabolic strategies emerges from community interactions in strongly fluctuating environments
  13. Higher-Order Interactions in Auxotroph Communities Enhance Their Resilience to Resource Fluctuations
  14. Semi-quantitative group testing for efficient and accurate qPCR screening of pathogens with a wide range of loads
  15. Emergence of catalytic function in prebiotic information-coding polymers
  16. Emergence of catalytic function in prebiotic information-coding polymers
  17. Coarse-Grained Model of Serial Dilution Dynamics in Synthetic Human Gut Microbiome
  18. A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains
  19. Emergence of catalytic function in prebiotic information-coding polymers
  20. FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi
  21. The ecological consequences of microbial metabolic strategies in fluctuating environments
  22. Functional convergence in slow-growing microbial communities arises from thermodynamic constraints
  23. Emergence of catalytic function in prebiotic information-coding polymers
  24. Predicting metabolite response to dietary intervention using deep learning
  25. Predicting metabolomic profiles from microbial composition through neural ordinary differential equations
  26. DR-BERT: A Protein Language Model to Annotate Disordered Regions
  27. Fine-scale diversity of microbial communities due to satellite niches in boom and bust environments
  28. Predicting metabolomic profiles from microbial composition through neural ordinary differential equations
  29. FUN-PROSE: A Deep Learning Approach to Predict Condition-Specific Gene Expression in Fungi
  30. Mitigation of SARS-CoV-2 transmission at a large public university
  31. Fine-scale diversity of microbial communities due to satellite niches in boom-and-bust environments
  32. Functional convergence in slow-growing microbial communities arises from thermodynamic constraints
  33. Complementary resource preferences spontaneously emerge in diauxic microbial communities
  34. Stochastic social behavior coupled to COVID-19 dynamics leads to waves, plateaus, and an endemic state
  35. Mitigation of SARS-CoV-2 Transmission at a Large Public University
  36. Time-dependent heterogeneity leads to transient suppression of the COVID-19 epidemic, not herd immunity
  37. Complementary resource preferences spontaneously emerge in diauxic microbial communities
  38. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
  39. Reduction of chaos in molecular sequences at the Origin of Life
  40. Stochastic social behavior coupled to COVID-19 dynamics leads to waves, plateaus and an endemic state
  41. Modeling COVID-19 Dynamics in Illinois under Nonpharmaceutical Interventions
  42. The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification
  43. Transforming the Language of Life
  44. Entry screening and multi-layer mitigation of COVID-19 cases for a safe university reopening
  45. Ligation of random oligomers leads to emergence of autocatalytic sequence network
  46. Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
  47. Persistent heterogeneity not short-term overdispersion determines herd immunity to COVID-19
  48. Projections and early-warning signals of a second wave of the COVID-19 epidemic in Illinois
  49. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
  50. Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks
  51. Ecology-guided prediction of cross-feeding interactions in the human gut microbiome
  52. Modeling COVID-19 dynamics in Illinois under non-pharmaceutical interventions
  53. Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations
  54. Window of Opportunity for Mitigation to Prevent Overflow of ICU capacity in Chicago by COVID-19
  55. Evidence for a multi-level trophic organization of the human gut microbiome
  56. Multistability and regime shifts in microbial communities explained by competition for essential nutrients
  57. The network structure and eco-evolutionary dynamics of CRISPR-induced immune diversification
  58. Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control
  59. Evidence for a multi-level trophic organization of the human gut microbiome
  60. Phages associated with horses provide new insights into the dominance of lateral gene transfer in virulent bacteriophages evolution in natural systems
  61. Predicting tumor cell line response to drug pairs with deep learning
  62. Alternative stable states in a model of microbial community limited by multiple essential nutrients
  63. Onset of natural selection in populations of autocatalytic heteropolymers
  64. Phase transitions in social networks inspired by the Schelling model
  65. Hitchhiking, collapse and contingency in phage infections of migrating bacterial populations
  66. Multiple stable states in microbial communities explained by the stable marriage problem
  67. KBase: The United States Department of Energy Systems Biology Knowledgebase
  68. Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems
  69. Multiple stable states in microbial communities explained by the stable marriage problem
  70. Diversity, stability, and reproducibility in stochastically assembled microbial ecosystems
  71. Onset of natural selection in auto-catalytic heteropolymers
  72. Severe population collapses and species extinctions in multihost epidemic dynamics
  73. Recombination-Driven Genome Evolution and Stability of Bacterial Species
  74. Family-specific scaling laws in bacterial genomes
  75. Severe population collapses and species extinctions in multi-host epidemic dynamics
  76. Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
  77. Pan- and core- network analysis of co-expression genes in a model plant
  78. DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks
  79. Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis
  80. Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis
  81. Pan- and core- network analysis of co-expression genes in a model plant
  82. Diversity Waves in Collapse-Driven Population Dynamics
  83. Spontaneous emergence of autocatalytic information-coding polymers
  84. Diversity waves in collapse-driven population dynamics
  85. Recombinant transfer in the basic genome of Escherichia coli
  86. Well-temperate phage: optimal bet-hedging against local environmental collapses
  87. Transcriptional Responses to Sucrose Mimic the Plant-Associated Life Style of the Plant Growth Promoting Endophyte Enterobacter sp. 638
  88. Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar
  89. Evolutionary Capacitance and Control of Protein Stability in Protein-Protein Interaction Networks
  90. Universal distribution of component frequencies in biological and technological systems
  91. Joint scaling laws in functional and evolutionary categories in prokaryotic genomes
  92. A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology
  93. Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions
  94. Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes
  95. Power laws in chess
  96. Toolbox model of evolution of prokaryotic metabolic networks and their regulation
  97. Fluctuations in Mass-Action Equilibrium of Protein Binding Networks
  98. Promise and Pitfalls of Extending Google's PageRank Algorithm to Citation Networks
  99. Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks
  100. Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size
  101. Algorithmic Basis for Pathway Visualization
  102. Propagation of Concentration Perturbations in Equilibrium Protein Binding Networks
  103. Topological and Dynamical Properties of Protein Interaction Networks
  104. Propagation of large concentration changes in reversible protein-binding networks
  105. Spreading out of perturbations in reversible reaction networks
  106. Ranking scientific publications using a model of network traffic
  107. UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model
  108. Better by half
  109. Exploring an opinion network for taste prediction: An empirical study
  110. Finding scientific gems with Google’s PageRank algorithm
  111. Optimal ranking in networks with community structure
  112. Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins
  113. Automatic pathway building in biological association networks
  114. Computational architecture of the yeast regulatory network
  115. Binding properties and evolution of homodimers in protein-protein interaction networks
  116. UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model
  117. Diffusion on complex networks: a way to probe their large-scale topological structures
  118. Hierarchy Measures in Complex Networks
  119. The conundrum of stock versus bond prices
  120. Detection of topological patterns in complex networks: correlation profile of the internet
  121. Detection of Topological Patterns in Protein Networks
  122. DOES THE PRICE MULTIPLIER EFFECT ALSO HOLD FOR STOCKS?
  123. Modularity and Extreme Edges of the Internet
  124. Protein interaction networks beyond artifacts
  125. Specificity and Stability in Topology of Protein Networks
  126. Measures of globalization based on cross-correlations of world financial indices
  127. Extracting Hidden Information from Knowledge Networks
  128. Price fluctuations from the order book perspective—empirical facts and a simple model
  129. Quantum and classical dynamics in mixed-spin one-dimensional antiferromagnets
  130. Exact solution of a stochastic directed sandpile model
  131. Measures of Globalization Based on Cross-Correlations of World Financial Indices
  132. Energy Separation of Single-Particle and Continuum States in anS=1/2Weakly Coupled Chains Antiferromagnet
  133. Role of single-ion excitations in the mixed-spin quasi-one-dimensional quantum antiferromagnetNd2BaNiO5
  134. Simple model of a limit order-driven market
  135. Simple Model of a Limit Order-Driven Market
  136. Infrared Studies of the Onset of Conductivity in Ultrathin Pb Films
  137. 1/fNoise in Bak-Tang-Wiesenfeld Models on Narrow Stripes
  138. BaCu2Si2O7: A quasi-one-dimensionalS=1/2antiferromagnetic chain system
  139. Magnetic anisotropy and low-energy spin waves in the Dzyaloshinskii-Moriya spiral magnetBa2CuGe2O7
  140. Probability distribution of drawdowns in risky investments
  141. Experimental Evidence for Kaplan–Shekhtman–Entin-Wohlman–Aharony Interactions inBa2CuGe2O7
  142. Critical exponents of the anisotropic Bak-Sneppen model
  143. Magnetic ordering, spin waves, and Haldane-gap excitations in(NdxY1−x)2BaNiO5linear-chain mixed-spin antiferromagnets
  144. Optimal Investment Strategy for Risky Assets
  145. Universal Behavior of One-Dimensional Gapped Antiferromagnets in a Staggered Magnetic Field
  146. Comment on “Role of Intermittency in Urban Development: A Model of Large-Scale City Formation”
  147. Dynamical optimization theory of a diversified portfolio
  148. Experimental Measurement of the Staggered Magnetization Curve for a Haldane Spin Chain
  149. Expansion Around the Mean-Field Solution of the Bak-Sneppen Model
  150. Field-induced incommensurate-to-commensurate transition inBa2CuGe2O7
  151. Coexistence of Haldane-gap excitations and long-range antiferromagnetic order in mixed-spin nickelatesR2BaNiO5
  152. Square-lattice spiral magnetBa2CuGe2O7in an in-plane magnetic field
  153. Field-Induced Commensurate-Incommensurate Phase Transition in a Dzyaloshinskii-Moriya Spiral Antiferromagnet
  154. Infinite Series of Exact Equations in the Bak-Sneppen Model of Biological Evolution
  155. Avalanche dynamics in evolution, growth, and depinning models
  156. Self-organized critical directed percolation
  157. Exactly Solved Model of Self-Organized Criticality
  158. Laws for Stationary States in Systems with Extremal Dynamics
  159. Time Directed Avalanches in Invasion Models
  160. Avalanches and1fNoise in Evolution and Growth Models
  161. Scaling theory of depinning in the Sneppen model
  162. Field Theory for a Model of Self-Organized Criticality
  163. Correlations, mean-field properties, and scaling of a one-dimensional sandpile model
  164. The First Critical Field and Locking-Unlocking Phase Transition in Layered Superconductors