All Stories

  1. Dinoflagellate blooms reshape bacterioplankton assembly and alter free-living and particle-attached community dynamics with implications for harmful algal bloom processes

    Article • Applied and Environmental Microbiology, October 2026, ASM Journals

    Dr Senjie Lin

  2. Prorocentrum pseudonux sp. nov. ( Prorocentrales, Dinophyceae ): A new nanoplanktonic dinoflagellate from the open tropical Pacific Ocean

    Article • Phycological Research, October 2026, Wiley

    Dr Senjie Lin

  3. Symbiont vesicle RNA sustains coral mutualism and its loss drives succession

    Article • August 2026, Springer Science + Business Media

    Dr Senjie Lin

  4. Evaluation of Redox-Mediated Responses of Coral Symbiotic Dinoflagellates to Nano-Selenium

    Article • Marine Drugs, July 2026, MDPI AG

    Dr Senjie Lin

  5. Morphology and Molecular Phylogeny of the Planktonic Dinoflagellate Mesoporos perforatus : A New Lineage of Prorocentrum (Prorocentrales, Dinophyceae)

    Article • Journal of Eukaryotic Microbiology, June 2026, Wiley

    Dr Senjie Lin, Dr Fernando Gomez

  6. Environmental stress drives microbial regime shifts and functional reorganization in a large deep reservoir

    Article • Environmental Research, June 2026, Elsevier

    Dr Senjie Lin

  7. Global Patterns and Variability in Coral Responses to Plastic Pollution

    Article • Environmental Science & Technology, May 2026, American Chemical Society (ACS)

    Dr Senjie Lin

  8. Synergistic Effects of Viruses and Environmental Gradients on Carbon Cycling in a River Ecosystem

    Article • Biology, February 2026, MDPI AG

    Dr Senjie Lin

  9. The emerging contaminant salicylic acid disrupts photosynthesis and plastid genome replication in the dinoflagellate Fugacium kawagutii

    Article • January 2026, Elsevier

    Dr Senjie Lin

  10. Mechanisms of light harvesting complex proteins in photoprotection of the brown tide alga

    Article • Nature Communications, December 2025, Springer Science + Business Media

    Dr Senjie Lin

  11. The marine phosphorus cycle driven by an unlikely microbe

    Article • Nature Communications, November 2025, Springer Science + Business Media

    Dr Senjie Lin

  12. Molecular techniques for understanding harmful algal blooms: A review

    Article • Harmful Algae, September 2025, Elsevier

    Dr Senjie Lin

  13. Widespread Presence of SPX and Its Potential Role as a Phosphorus Nutrient Regulator in Dinoflagellates

    Article • Microorganisms, August 2025, MDPI AG

    Dr Senjie Lin

  14. The enigmatic dinoflagellate Gloeodinium marinum is a Prorocentrum species, P. palmelloides nom. nov. (Dinophyceae)

    Article • Journal of Phycology, July 2025, Wiley

    Dr Senjie Lin, Dr Fernando Gomez

  15. The Ecological Genomics of Algae

    Article • June 2025, Taylor & Francis

    Dr Senjie Lin

  16. The Dinoflagellate Gonyaulax fragilis Is ‘the Wrong Man’ of the Dirty Seas, and Reinstatement of Steiniella Within the Protoceratiaceae (Dinophyceae)

    Article • Journal of Eukaryotic Microbiology, June 2025, Wiley

    Dr Senjie Lin, Dr Fernando Gomez

  17. Induction of a neurotoxin in diatoms by iron limitation via cysteine synthase

    Article • Proceedings of the National Academy of Sciences, June 2025, Proceedings of the National Academy of Sciences

    Dr. Aifeng Li, Dr Senjie Lin

  18. Urea Amidolyase as an Enzyme for Urea Utilisation in Phytoplankton: Functional Display in Chlamydomonas reinhardtii

    Article • Molecular Ecology, March 2025, Wiley

    Dr Senjie Lin

  19. Estimating Carbon Biomass Using DNA: Phytoplankton as a Case Study

    Article • DNA, March 2025, MDPI AG

    Dr Senjie Lin

  20. Nitrogen source type modulates heat stress response in coral symbiont ( Cladocopium goreaui )

    Article • Applied and Environmental Microbiology, February 2025, ASM Journals

    Dr Senjie Lin

  21. Broad active metabolic pathways, autophagy, and antagonistic hormones regulate dinoflagellate cyst dormancy in marine sediments

    Article • Science Advances, February 2025, American Association for the Advancement of Science

    Dr Senjie Lin

  22. Reinstatement of the genus Coenobiodiscus for the distinctive colonial diatom Planktoniella muriformis (Bacillariophyta)

    Article • Diatom Research, January 2025, Taylor & Francis

    Dr Senjie Lin, Dr Fernando Gomez

  23. Large-scale seaweed cultivation as a nature solution for carbon-negative economy and restorative environmental stewardship: Lessons from China

    Article • Renewable and Sustainable Energy Reviews, January 2025, Elsevier

    Dr Senjie Lin

  24. Harmful Algal Blooms

    Article • January 2025, Elsevier

    Dr Senjie Lin

  25. The identity of Centrodinium elongatum, type species of the dinoflagellate genus Centrodinium (Dinophyceae), and a review on the synonymy of allied species

    Article • Journal of Eukaryotic Microbiology, October 2024, Wiley

    Dr Senjie Lin, Dr Fernando Gomez

  26. A decade of dinoflagellate genomics illuminating an enigmatic eukaryote cell

    Article • BMC Genomics, October 2024, Springer Science + Business Media

    Dr Senjie Lin

  27. Phosphorus limitation intensifies heat-stress effects on the potential mutualistic capacity in the coral-derived Symbiodinium

    Article • The Science of The Total Environment, October 2024, Elsevier

    Dr Senjie Lin

  28. Genome of Halimeda opuntia reveals differentiation of subgenomes and molecular bases of multinucleation and calcification in algae

    Article • Proceedings of the National Academy of Sciences, September 2024, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  29. Niche features and assembly mechanisms of microeukaryotic generalists and specialists along a north-south gradient of a subtropical coastal sea

    Article • Marine Ecology Progress Series, August 2024, Inter-Research Science Center

    Dr Senjie Lin

  30. Higher genotypic diversity and distinct assembly mechanism of free-living Symbiodiniaceae assemblages than sympatric coral-endosymbiotic assemblages in a tropical coral reef

    Article • Microbiology Spectrum, August 2024, ASM Journals

    Dr Senjie Lin

  31. Salinity decline promotes growth and harmful blooms of a toxic alga by diverting carbon flow

    Article • Global Change Biology, June 2024, Wiley

    Dr Senjie Lin

  32. Proton-pumping rhodopsin of the coral symbiont Breviolum minutum and its potential role in coping with phosphorus deficiency in future warmer ocean

    Article • Coral Reefs, May 2024, Springer Science + Business Media

    Dr Senjie Lin

  33. Epiphytic zooplankton community profiles in a typical urban wetland as revealed by DNA metabarcoding

    Article • Journal of Oceanology and Limnology, May 2024, Springer Science + Business Media

    Dr Senjie Lin

  34. Urea amidolyase as the enzyme for urea utilization in algae: functional display inChlamydomonas reinhardtiiand evolution in algae

    Article • May 2024, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  35. Shining light on dinoflagellate photosystem I

    Article • Nature Communications, April 2024, Springer Science + Business Media

    Dr Senjie Lin

  36. Succession of diversity, assembly mechanisms, and activities of the microeukaryotic community throughout Scrippsiella acuminata (Dinophyceae) bloom phases

    Article • Harmful Algae, April 2024, Elsevier

    Dr Senjie Lin

  37. Dinoflagellate Proton-Pump Rhodopsin Genes in Long Island Sound: Diversity and Spatiotemporal Distribution

    Article • Microorganisms, March 2024, MDPI AG

    Dr Senjie Lin

  38. In situ community transcriptomics illuminates CO 2 -fixation potentials and supporting roles of phagotrophy and proton pump in plankton in a subtropical marginal sea

    Article • Microbiology Spectrum, March 2024, ASM Journals

    Dr Senjie Lin

  39. Effects and mechanisms of glyphosate as phosphorus nutrient on element stoichiometry and metabolism in the diatom Phaeodactylum tricornutum

    Article • Applied and Environmental Microbiology, February 2024, ASM Journals

    Dr Senjie Lin

  40. Comparative genomics illuminates adaptive evolution of DVNP with lifestyle and with loss of histone H1 in dinoflagellates

    Article • February 2024, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  41. Glyphosate (Roundup) as phosphorus nutrient enhances carbon and nitrogen accumulation and up-regulates phosphorus metabolisms in the haptophyte Isochrysis galbana

    Article • The Science of The Total Environment, February 2024, Elsevier

    Dr Senjie Lin

  42. Misidentifications of the bloom-forming dinoflagellates Gymnodinium litorale and Margalefidinium polykrikoides in the Mediterranean Sea

    Article • Regional Studies in Marine Science, February 2024, Elsevier

    Dr Senjie Lin, Dr Fernando Gomez

  43. Clustered Regularly Interspaced Short Palindromic Repeat/CRISPR-Associated Protein and Its Utility All at Sea: Status, Challenges, and Prospects

    Article • Microorganisms, January 2024, MDPI AG

    Dr Senjie Lin

  44. Novel Plastid Genome Characteristics in Fugacium kawagutii and the Trend of Accelerated Evolution of Plastid Proteins in Dinoflagellates

    Article • Genome Biology and Evolution, December 2023, Oxford University Press (OUP)

    Dr Senjie Lin

  45. Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation

    Article • Applied and Environmental Microbiology, November 2023, ASM Journals

    Dr Senjie Lin

  46. Alkaline Phosphatase PhoD Mutation Induces Fatty Acid and Long-Chain Polyunsaturated Fatty Acid (LC-PUFA)-Bound Phospholipid Production in the Model Diatom Phaeodactylum tricornutum

    Article • Marine Drugs, October 2023, MDPI AG

    Dr Senjie Lin

  47. Two-sided effects of the organic phosphorus phytate on a globally important marine coccolithophorid phytoplankton

    Article • Microbiology Spectrum, October 2023, ASM Journals

    Dr Senjie Lin

  48. Species‐dependent effects of seawater acidification on alkaline phosphatase activity in dinoflagellates

    Article • Journal of Phycology, October 2023, Wiley

    Dr Senjie Lin

  49. Environmental irradiance and nitrogen source variability trigger the intracellular carbon and nitrogen reallocation of Gracilariopsis lemaneiformis (Rhodophyta)

    Article • Aquaculture, October 2023, Elsevier

    Dr Senjie Lin

  50. Phosphorus nutrition strategies in a Symbiodiniacean species: Implications in coral‐alga symbiosis facing increasing phosphorus deficiency in future warmer oceans

    Article • Global Change Biology, September 2023, Wiley

    Dr Senjie Lin

  51. A comparative study reveals the relative importance of prokaryotic and eukaryotic proton pump rhodopsins in a subtropical marginal sea

    Article • ISME Communications, August 2023, Springer Science + Business Media

    Dr Senjie Lin

  52. Role of diatom-derived oxylipins in organic phosphorus recycling during coastal diatom blooms in the northern South China Sea

    Article • The Science of The Total Environment, August 2023, Elsevier

    Dr Senjie Lin

  53. In Situ Molecular Ecological Analyses Illuminate Distinct Factors Regulating Formation and Demise of a Harmful Dinoflagellate Bloom

    Article • Microbiology Spectrum, June 2023, ASM Journals

    Dr Senjie Lin

  54. Phosphate limitation and ocean acidification co-shape phytoplankton physiology and community structure

    Article • Nature Communications, May 2023, Springer Science + Business Media

    Dr Senjie Lin

  55. Transcriptomics and physiological analyses unveil the distinct mechanisms of ATP and glucose-6-phosphate utilization in Phaeodactylum tricornutum

    Article • Frontiers in Marine Science, May 2023, Frontiers

    Dr Senjie Lin

  56. Building consensus around the assessment and interpretation of Symbiodiniaceae diversity

    Article • PeerJ, May 2023, PeerJ

    Dr Senjie Lin

  57. Phytoplankton and Microzooplankton Community Structure and Assembly Mechanisms in Northwestern Pacific Ocean Estuaries with Environmental Heterogeneity and Geographic Segregation

    Article • Microbiology Spectrum, April 2023, ASM Journals

    Dr Senjie Lin

  58. Unraveling the metabolic effects of benzophenone-3 on the endosymbiotic dinoflagellate Cladocopium goreaui

    Article • Frontiers in Microbiology, March 2023, Frontiers

    Dr Senjie Lin

  59. High Heterotrophic Plasticity of Massive Coral Porites pukoensis Contributes to Its Tolerance to Bioaccumulated Microplastics

    Article • Environmental Science & Technology, February 2023, American Chemical Society (ACS)

    Dr Senjie Lin

  60. Molecular phylogeny of the spiny‐surfaced species of the dinoflagellate Prorocentrum with the description of P. thermophilum sp. nov. and P. criophilum sp. nov. (Prorocentrales, Dinophyceae)

    Article • Journal of Phycology, January 2023, Wiley

    Dr Senjie Lin, Dr Fernando Gomez

  61. Misidentifications of the Red-Tide Dinoflagellates Gymnodinium Litorale and Margalefidinium Polykrikoides in the Mediterranean Sea

    Article • January 2023, Elsevier

    Dr Senjie Lin

  62. Persistent eutrophication and hypoxia in the coastal ocean

    Article • Cambridge Prisms Coastal Futures, January 2023, Cambridge University Press

    Dr Senjie Lin

  63. High-throughput sequencing reveals omnivorous and preferential diets of the rotifer Polyarthra in situ

    Article • Frontiers in Microbiology, December 2022, Frontiers

    Dr Senjie Lin

  64. Species-dependent effects of seawater acidification on alkaline phosphatase activity in dinoflagellates

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  65. An ancient enzyme finds a new home: Prevalence and neofunctionalization of trypsin in marine phytoplankton

    Article • Journal of Phycology, December 2022, Wiley

    Dr Senjie Lin

  66. Isolation, identification and toxicity of three strains of Heterocapsa (Dinophyceae) in a harmful event in Fujian, China

    Article • Harmful Algae, December 2022, Elsevier

    Dr Senjie Lin

  67. Unsuspected functions of alkaline phosphatase PhoD in the diatom Phaeodactylum tricornutum

    Article • Algal Research, November 2022, Elsevier

    Dr Senjie Lin

  68. A grazing-driven positive nutrient feedback loop and active sexual reproduction underpin widespread Noctiluca green tides

    Article • ISME Communications, October 2022, Springer Science + Business Media

    Dr Senjie Lin

  69. Active meiosis during dinoflagellate blooms: A ‘sex for proliferation’ hypothesis

    Article • Harmful Algae, October 2022, Elsevier

    Dr Senjie Lin

  70. Transcriptomic and metabolic signatures of diatom plasticity to light fluctuations

    Article • Plant Physiology, September 2022, Oxford University Press (OUP)

    Dr Senjie Lin

  71. Dinoflagellate Proton-Pump Rhodopsin Gene in Long Island Sound: Diversity and Spatiotemporal Distribution

    Article • August 2022, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  72. Coral bleaching from a nutrient perspective is understudied: A bibliometric survey

    Article • Frontiers in Marine Science, August 2022, Frontiers

    Dr Senjie Lin

  73. Physiological and metabolic effects of glyphosate as the sole P source on a cosmopolitan phytoplankter and biogeochemical implications

    Article • The Science of The Total Environment, August 2022, Elsevier

    Dr Senjie Lin

  74. Dissipation of a Polykrikos geminatum Bloom after Wind Events in Pearl River Estuary

    Article • Water, July 2022, MDPI AG

    Dr Senjie Lin

  75. Trypsin is a coordinate regulator of N and P nutrients in marine phytoplankton

    Article • Nature Communications, July 2022, Springer Science + Business Media

    Dr Senjie Lin

  76. Energy metabolism and genetic information processing mark major transitions in the life history of Scrippsiella acuminata (Dinophyceae)

    Article • Harmful Algae, July 2022, Elsevier

    Dr Senjie Lin

  77. Environmental nitrogen and phosphorus nutrient variability triggers intracellular resource reallocation in Gracilariopsis lemaneiformis (Rhodophyta)

    Article • Algal Research, July 2022, Elsevier

    Dr Senjie Lin

  78. Building Consensus around the Assessment and Interpretation of Symbiodiniaceae Diversity

    Article • June 2022, MDPI AG

    Dr Senjie Lin, Dr Cheong Xin Chan

  79. P-Limitation Promotes Carbon Accumulation and Sinking of Emiliania huxleyi Through Transcriptomic Reprogramming

    Article • Frontiers in Marine Science, May 2022, Frontiers

    Dr Senjie Lin

  80. Editorial: Physiological Regulation and Homeostasis Among Coral Holobiont Partners

    Article • Frontiers in Physiology, May 2022, Frontiers

    Dr Senjie Lin

  81. Genetic differentiation and phylogeography of rotifer Polyarthra dolichoptera and P. vulgaris populations between Southeastern China and eastern North America: High intercontinental differences

    Article • Ecology and Evolution, May 2022, Wiley

    Dr Senjie Lin

  82. Functional differentiation and complementation of alkaline phosphatases and choreography of DOP scavenging in a marine diatom

    Article • Molecular Ecology, April 2022, Wiley

    Dr Senjie Lin

  83. Interactive effects of acidification and copper exposure on the reproduction and metabolism of coral endosymbiont Cladocopium goreaui

    Article • Marine Pollution Bulletin, April 2022, Elsevier

    Dr Senjie Lin

  84. Sediment Trap Study Reveals Dominant Contribution of Metazoans and Dinoflagellates to Carbon Export and Dynamic Impacts of Microbes in a Subtropical Marginal Sea

    Article • Journal of Geophysical Research Biogeosciences, March 2022, American Geophysical Union (AGU)

    Dr Senjie Lin

  85. Detection of Prorocentrum shikokuense in the Mediterranean Sea and evidence that P. dentatum, P. obtusidens and P. shikokuense are three different species (Prorocentrales, Dinophyceae)

    Article • Acta Protozoologica, February 2022, Uniwersytet Jagiellonski – Wydawnictwo Uniwersytetu Jagiellonskiego

    Dr Senjie Lin

  86. Differential CO2-fixation potentials and supporting roles of phagotrophy and proton pump among plankton lineages in a subtropical marginal sea

    Article • February 2022, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  87. Microbiome Associated With Gambierdiscus balechii Cultures Under Different Toxicity Conditions

    Article • Frontiers in Marine Science, February 2022, Frontiers

    Dr Senjie Lin

  88. Phytate as a Phosphorus Nutrient with Impacts on Iron Stress-Related Gene Expression for Phytoplankton: Insights from the Diatom Phaeodactylum tricornutum

    Article • Applied and Environmental Microbiology, January 2022, ASM Journals

    Dr Senjie Lin

  89. Eukaryotic Plankton Community Assembly and Influencing Factors between Continental Shelf and Slope Sites in the Northern South China Sea

    Article • SSRN Electronic Journal, January 2022, Elsevier

    Dr Senjie Lin

  90. Differential Affinities of a Pocillopora damicornis Galectin to Five Genera of Symbiodiniaceae at Different Temperatures

    Article • Frontiers in Marine Science, December 2021, Frontiers

    Dr Senjie Lin

  91. Isolation from a fish kill and transcriptomic characterization of Gyrodinium jinhaense off Long Island Sound

    Article • Harmful Algae, December 2021, Elsevier

    Dr Senjie Lin

  92. Species richness and generalists–specialists mosaicism of symbiodiniacean symbionts in corals from Hong Kong revealed by high-throughput ITS sequencing

    Article • Coral Reefs, November 2021, Springer Science + Business Media

    Dr Senjie Lin

  93. Diversity Distribution, Driving Factors and Assembly Mechanisms of Free-Living and Particle-Associated Bacterial Communities at a Subtropical Marginal Sea

    Article • Microorganisms, November 2021, MDPI AG

    Dr Senjie Lin

  94. An Ancient Enzyme Finds a New Home: Prevalence and Neofunctionalization of Trypsin in Marine Phytoplankton

    Article • November 2021, Research Square

    Dr Senjie Lin

  95. Spatial organization of dinoflagellate genomes: Novel insights and remaining critical questions

    Article • Journal of Phycology, September 2021, Wiley

    Dr Senjie Lin

  96. Remarkable Metabolic Reconfiguration due to N Deficiency and an Ammonium‐to‐Nitrate Shift in the Free‐Living Effrenium voratum (Symbiodiniaceae)

    Article • Journal of Geophysical Research Biogeosciences, September 2021, American Geophysical Union (AGU)

    Dr Senjie Lin

  97. Dinoflagellate-targeted PCR reveals highly abundant and diverse communities of parasitic dinoflagellates in and near Zhubi Reef, South China Sea

    Article • Coral Reefs, August 2021, Springer Science + Business Media

    Dr Senjie Lin

  98. Omics study of harmful algal blooms in China: Current status, challenges, and future perspectives

    Article • Harmful Algae, July 2021, Elsevier

    Dr Senjie Lin

  99. SPX-related genes regulate phosphorus homeostasis in the marine phytoplankton, Phaeodactylum tricornutum

    Article • Communications Biology, June 2021, Springer Science + Business Media

    Dr Senjie Lin

  100. A Rhizobium bacterium and its population dynamics under different culture conditions of its associated toxic dinoflagellate Gambierdiscus balechii

    Article • Marine Life Science & Technology, June 2021, Springer Science + Business Media

    Dr Senjie Lin

  101. Nitrogen availability improves the physiological resilience of coral endosymbiont Cladocopium goreaui to high temperature

    Article • Journal of Phycology, May 2021, Wiley

    Dr Senjie Lin

  102. Epigenetic effects of silver nanoparticles and ionic silver in Tetrahymena thermophila

    Article • The Science of The Total Environment, May 2021, Elsevier

    Dr Senjie Lin

  103. Roles of Alkaline Phosphatase PhoA in Algal Metabolic Regulation under Phosphorus‐replete Conditions

    Article • Journal of Phycology, April 2021, Wiley

    Dr Senjie Lin

  104. Transcriptome profiling reveals versatile dissolved organic nitrogen utilization, mixotrophy, and N conservation in the dinoflagellate Prorocentrum shikokuense under N deficiency

    Article • The Science of The Total Environment, April 2021, Elsevier

    Dr Senjie Lin

  105. Transcriptomic and isotopic data reveal central role of ammonium in facilitating the growth of the mixotrophic dinoflagellate, Dinophysis acuminata

    Article • Harmful Algae, April 2021, Elsevier

    Dr Senjie Lin

  106. Genetic Differentiation and Phylogeography of Rotifer Polyarthra Dolichoptera and P. Vulgaris Complexes Between Southern China and Eastern North America: High Intercontinental Differences

    Article • February 2021, Springer Science + Business Media

    Dr Senjie Lin

  107. Integrated Transcriptome Sequencing (RNA-seq) and Proteomic Studies Reveal Resource Reallocation towards Energy Metabolism and Defense in Skeletonema marinoi in Response to CO 2 Increase

    Article • Applied and Environmental Microbiology, February 2021, ASM Journals

    Dr Senjie Lin

  108. Differential enrichment and physiological impacts of ingested microplastics in scleractinian corals in situ

    Article • Journal of Hazardous Materials, February 2021, Elsevier

    Dr Senjie Lin

  109. Abundant synthesis of long‐chain polyunsaturated fatty acids in Eutreptiella sp. (Euglenozoa) revealed by chromatographic and transcriptomic analyses

    Article • Journal of Phycology, January 2021, Wiley

    Dr Senjie Lin

  110. Physiological and transcriptomic responses to N-deficiency and ammonium: Nitrate shift in Fugacium kawagutii (Symbiodiniaceae)

    Article • The Science of The Total Environment, January 2021, Elsevier

    Dr Senjie Lin

  111. Genetic differentiation and phylogeography of rotifer Polyarthra dolichoptera and P. vulgaris complexes between Southern China and eastern North America: high intercontinental differences

    Article • November 2020, Wiley

    Dr Senjie Lin

  112. Methylation Pattern and Expression Dynamics of Methylase and Photosystem Genes Under varying light Intensities in Fugacium kawagutii (Symbiodiniaceae)

    Article • Journal of Phycology, October 2020, Wiley

    Dr Senjie Lin

  113. How do spatial and environmental factors shape the structure of a coastal macrobenthic community and meroplanktonic larvae cohort? Evidence from Daya Bay

    Article • Marine Pollution Bulletin, August 2020, Elsevier

    Dr Senjie Lin

  114. Glycerol Utilization By Phytoplankton1

    Article • Journal of Phycology, June 2020, Wiley

    Dr Senjie Lin

  115. Heterologous expression and cell membrane localization of dinoflagellate opsins (rhodopsin proteins) in mammalian cells

    Article • Marine Life Science & Technology, June 2020, Springer Science + Business Media

    Dr Senjie Lin

  116. Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae

    Article • Frontiers in Microbiology, May 2020, Frontiers

    Dr Senjie Lin

  117. One enzyme many faces: alkaline phosphatase-based phosphorus-nutrient strategies and the regulatory cascade revealed by CRISPR/Cas9 gene knockout

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  118. Preferential synthesis of very long chain polyunsaturated fatty acids ineutreptiellasp. (eugelnozoa) revealed by chromatographic and transcriptomic analyses

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  119. Heterologous expression and cell membrane localization of dinoflagellate rhodopsins in mammalian cells

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  120. Physiological and transcriptomic responses to N-deficiency and ammonium: nitrate shift inFugacium kawagutii(Symbiodiniaceae)

    Article • May 2020, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  121. Characterizing ciguatoxin (CTX)- and Non-CTX-producing strains of Gambierdiscus balechii using comparative transcriptomics

    Article • The Science of The Total Environment, May 2020, Elsevier

    Dr Senjie Lin

  122. Study of Genetic Diversity of Micro-planktonic Eukaryotes in South China Sea by ITS and 5.8s rRNA Gene Cloning and Sequencing

    Article • International Journal of Simulation Systems Science & Technology, April 2020, UK Simulation Society

    Dr Senjie Lin

  123. Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

    Article • Nature Chemical Biology, April 2020, Springer Science + Business Media

    Dr Senjie Lin

  124. Genetic tool development in marine protists: emerging model organisms for experimental cell biology

    Article • Nature Chemical Biology, April 2020, Springer Science + Business Media

    Dr Senjie Lin, Dr Sebastian R Najle, Dr Tobias von der Haar

  125. High throughput sequencing of 18S rRNA and its gene to characterize a Prorocentrum shikokuense (Dinophyceae) bloom

    Article • Harmful Algae, April 2020, Elsevier

    Dr Senjie Lin

  126. Microplastic exposure represses the growth of endosymbiotic dinoflagellate Cladocopium goreaui in culture through affecting its apoptosis and metabolism

    Article • Chemosphere, April 2020, Elsevier

    Dr Senjie Lin

  127. Transcriptomic and physiological responses of Skeletonema costatum to ATP utilization

    Article • Environmental Microbiology, February 2020, Wiley

    Dr Senjie Lin

  128. RNA-seq profiling of Fugacium kawagutii reveals strong responses in metabolic processes and symbiosis potential to deficiencies of iron and other trace metals

    Article • The Science of The Total Environment, February 2020, Elsevier

    Dr Senjie Lin

  129. Identification and expression analysis of meiosis-related genes in the harmful alga Heterosigma akashiwo (Raphidophyceae)

    Article • Harmful Algae, February 2020, Elsevier

    Dr Senjie Lin

  130. Utilization of various forms of nitrogen and expression regulation of transporters in the harmful alga Heterosigma akashiwo (Raphidophyceae)

    Article • Harmful Algae, February 2020, Elsevier

    Dr Senjie Lin

  131. Nuclear Gene Transformation in the Dinoflagellate Oxyrrhis marina

    Article • Microorganisms, January 2020, MDPI AG

    Dr Senjie Lin

  132. Genome Improvement and Core Gene Set Refinement of Fugacium kawagutii

    Article • Microorganisms, January 2020, MDPI AG

    Dr Senjie Lin

  133. Comparative metatranscriptomic profiling and microRNA sequencing to reveal active metabolic pathways associated with a dinoflagellate bloom

    Article • The Science of The Total Environment, January 2020, Elsevier

    Dr Senjie Lin

  134. SAGER: a database of Symbiodiniaceae and Algal Genomic Resource

    Article • Database, January 2020, Oxford University Press (OUP)

    Dr Senjie Lin

  135. Insights into protist diversity and biogeography in intertidal sediments sampled across a range of spatial scales

    Article • Limnology and Oceanography, November 2019, Wiley

    Dr Senjie Lin

  136. Illuminating the dark depths inside coral

    Article • Cellular Microbiology, October 2019, Wiley

    Dr Senjie Lin

  137. Isolation and Characterization of aRhizobiumBacterium Associated with the Toxic DinoflagellateGambierdiscus balechii

    Article • October 2019, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  138. Non-Conventional Metal Ion Cofactor Requirement of Dinoflagellate Alkaline Phosphatase and Translational Regulation by Phosphorus Limitation

    Article • Microorganisms, August 2019, MDPI AG

    Dr Senjie Lin

  139. Genetic tool development in marine protists: Emerging model organisms for experimental cell biology

    Article • August 2019, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  140. Flourishing deep-sea AAP bacteria detected by flow cytometric sorting and molecular analysis

    Article • PLOS One, June 2019, PLOS

    Dr Senjie Lin

  141. Nuclear gene transformation in a dinoflagellate

    Article • April 2019, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  142. Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in Fugacium kawagutii

    Article • Microorganisms, April 2019, MDPI AG

    Dr Senjie Lin

  143. Altered Immune Landscape and Disrupted Coral-Symbiodinium Symbiosis in the Scleractinian Coral Pocillopora damicornis by Vibrio coralliilyticus Challenge

    Article • Frontiers in Physiology, April 2019, Frontiers

    Dr Senjie Lin

  144. Metatranscriptomic Signatures Associated With Phytoplankton Regime Shift From Diatom Dominance to a Dinoflagellate Bloom

    Article • Frontiers in Microbiology, March 2019, Frontiers

    Dr Senjie Lin

  145. Illuminating the dark depths inside coral

    Article • January 2019, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  146. Initial evidence of functional siRNA machinery in dinoflagellates

    Article • Harmful Algae, January 2019, Elsevier

    Dr Senjie Lin

  147. Transcriptomic responses to thermal stress and varied phosphorus conditions in Symbiodinium kawagutii

    Article • December 2018, Cold Spring Harbor Laboratory Press

    Dr Senjie Lin

  148. Genome size‐dependent pcna gene copy number in dinoflagellates and molecular evidence of retroposition as a major evolutionary mechanism

    Article • Journal of Phycology, December 2018, Wiley

    Dr Senjie Lin

  149. Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae)

    Article • Harmful Algae, December 2018, Elsevier

    Dr Senjie Lin

  150. Acute microplastic exposure raises stress response and suppresses detoxification and immune capacities in the scleractinian coral Pocillopora damicornis

    Article • Environmental Pollution, December 2018, Elsevier

    Dr Senjie Lin

  151. Metatranscriptome Profiling Indicates Size-Dependent Differentiation in Plastic and Conserved Community Traits and Functional Diversification in Dinoflagellate Communities

    Article • Frontiers in Marine Science, October 2018, Frontiers

    Dr Senjie Lin

  152. Identification and Expression Analysis of an Atypical Alkaline Phosphatase in Emiliania huxleyi

    Article • Frontiers in Microbiology, September 2018, Frontiers

    Dr Senjie Lin

  153. Morphology and molecular phylogeny of epizoic araphid diatoms on marine zooplankton, including Pseudofalcula hyalina gen. & comb. nov. (Fragilariophyceae, Bacillariophyta)

    Article • Journal of Phycology, July 2018, Wiley

    Dr Fernando Gomez, Dr Senjie Lin

  154. Molecular phylogeny suggests the affinity of the planktonic diatoms Climacodium and Bellerochea (Lithodesmiales, Mediophyceae)

    Article • Diatom Research, July 2018, Taylor & Francis

    Dr Fernando Gomez, Dr Senjie Lin

  155. Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

    Article • The ISME Journal, June 2018, Oxford University Press (OUP)

    Dr Senjie Lin

  156. Circadian and irradiance effects on expression of antenna protein genes and pigment contents in dinoflagellate Prorocentrum donghaiense (Dinophycae)

    Article • Harmful Algae, May 2018, Elsevier

    Dr Senjie Lin

  157. Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

    Article • Nature Communications, May 2018, Springer Science + Business Media

    Dr Senjie Lin

  158. Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

    Article • Nature Communications, April 2018, Springer Science + Business Media

    Dr Senjie Lin

  159. Morphology and Molecular Phylogeny of Peritrich Ciliate Epibionts on Pelagic Diatoms: Vorticella oceanica and Pseudovorticella coscinodisci sp. nov. (Ciliophora, Peritrichia)

    Article • Protist, April 2018, Elsevier

    Dr Fernando Gomez, Dr Senjie Lin

  160. Metatranscriptome analysis reveals environmental and diel regulation of a Heterosigma akashiwo (raphidophyceae) bloom

    Article • Environmental Microbiology, February 2018, Wiley

    Dr Senjie Lin

  161. Speciation in the exposed intertidal zone: the case ofSaccharina angustissima comb. nov. &stat. nov. (Laminariales, Phaeophyceae)

    Article • Phycologia, January 2018, Taylor & Francis

    Dr Senjie Lin

  162. Transcriptomic and microRNAomic profiling reveals molecular mechanisms to cope with silver nanoparticle exposure in the ciliate Euplotes vannus

    Article • Environmental Science Nano, January 2018, Royal Society of Chemistry

    Dr Senjie Lin

  163. The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation

    Article • Environmental Microbiology, December 2017, Wiley

    Dr Senjie Lin

  164. Glyphosate Shapes a Dinoflagellate-Associated Bacterial Community While Supporting Algal Growth as Sole Phosphorus Source

    Article • Frontiers in Microbiology, December 2017, Frontiers

    Dr Senjie Lin

  165. Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense

    Article • PLOS One, November 2017, PLOS

    Dr Senjie Lin

  166. Transcriptomic and physiological analyses of the dinoflagellate Karenia mikimotoi reveal non-alkaline phosphatase-based molecular machinery of ATP utilisation

    Article • Environmental Microbiology, September 2017, Wiley

    Dr Senjie Lin

  167. Comparative Genomics Reveals Two Major Bouts of Gene Retroposition Coinciding with Crucial Periods of Symbiodinium Evolution

    Article • Genome Biology and Evolution, August 2017, Oxford University Press (OUP)

    Dr Senjie Lin

  168. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

    Article • Proceedings of the National Academy of Sciences, July 2017, Proceedings of the National Academy of Sciences

    Dr Cheong Xin Chan, Dr Senjie Lin

  169. Molecular mechanism of glucose-6-phosphate utilization in the dinoflagellate Karenia mikimotoi

    Article • Harmful Algae, July 2017, Elsevier

    Dr Senjie Lin

  170. Cell Cycle-Dependent Expression Dynamics of G1/S Specific Cyclin, Cellulose Synthase and Cellulase in the Dinoflagellate Prorocentrum donghaiense

    Article • Frontiers in Microbiology, June 2017, Frontiers

    Dr Senjie Lin

  171. Transcriptomic and microRNAomic profiling reveals multi-faceted mechanisms to cope with phosphate stress in a dinoflagellate

    Article • The ISME Journal, May 2017, Oxford University Press (OUP)

    Dr Senjie Lin

  172. Enhancement of Non-photochemical Quenching as an Adaptive Strategy under Phosphorus Deprivation in the Dinoflagellate Karlodinium veneficum

    Article • Frontiers in Microbiology, March 2017, Frontiers

    Dr Senjie Lin

  173. The Synonymy of the Toxic Dinoflagellates Prorocentrum mexicanum and P. rhathymum and the Description of P. steidingerae sp. nov. (Prorocentrales, Dinophyceae)

    Article • Journal of Eukaryotic Microbiology, March 2017, Wiley

    Dr Fernando Gomez, Dr Senjie Lin

  174. Life history interactions between the red algaeChondrus crispus(Gigartinales) andGrateloupia turuturu(Halymeniales) in a changing global environment

    Article • Phycologia, March 2017, Taylor & Francis

    Dr Senjie Lin

  175. Reply to Johnson et al.: Functionally active cryptophyte cell membrane and cytoplasm indicate intact symbionts within Mesodinium

    Article • Proceedings of the National Academy of Sciences, February 2017, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  176. Molecular phylogeny suggests transfer of Hemidiscus into Actinocyclus (Coscinodiscales, Coscinodiscophyceae)

    Article • Diatom Research, January 2017, Taylor & Francis

    Dr Fernando Gomez, Dr Senjie Lin

  177. Identification and expression analysis of blue light receptor aureochrome in the harmful alga Heterosigma akashiwo (raphidophyceae)

    Article • Harmful Algae, January 2017, Elsevier

    Dr Senjie Lin

  178. The Genetic Diversity of Mesodinium and Associated Cryptophytes

    Article • Frontiers in Microbiology, December 2016, Frontiers

    Dr Senjie Lin

  179. Cryptophyte farming by symbiotic ciliate host detected in situ

    Article • Proceedings of the National Academy of Sciences, October 2016, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  180. Morphological and molecular characterization ofPtychodiscus noctilucarevealed the polyphyletic nature of the order Ptychodiscales (Dinophyceae)

    Article • Journal of Phycology, August 2016, Wiley

    Dr Fernando Gomez, Dr Senjie Lin

  181. Circumtropical distribution of the epiphytic dinoflagellateCoolia malayensis(Dinophyceae): Morphology and molecular phylogeny from Puerto Rico and Brazil

    Article • Phycological Research, July 2016, Wiley

    Dr Fernando Gomez, Dr Senjie Lin

  182. Phosphorus Deficiency Inhibits Cell Division But Not Growth in the Dinoflagellate Amphidinium carterae

    Article • Frontiers in Microbiology, June 2016, Frontiers

    Dr Senjie Lin

  183. Genetic analysis of Noctiluca scintillans populations indicates low latitudinal differentiation in China but high China–America differences

    Article • Journal of Experimental Marine Biology and Ecology, April 2016, Elsevier

    Dr Senjie Lin

  184. Phylogenetic Analyses of Three Genes of Pedinomonas noctilucae, the Green Endosymbiont of the Marine Dinoflagellate Noctiluca scintillans, Reveal its Affiliation to the Order Marsupiomonadales (Chlorophyta, Pedinophyceae) under the Reinstated Name Prot...

    Article • Protist, April 2016, Elsevier

    Dr Senjie Lin

  185. Differential Growth Responses of Marine Phytoplankton to Herbicide Glyphosate

    Article • PLOS One, March 2016, PLOS

    Dr Senjie Lin

  186. Effects of Trace Metal Concentrations on the Growth of the Coral Endosymbiont Symbiodinium kawagutii

    Article • Frontiers in Microbiology, February 2016, Frontiers

    Dr Senjie Lin

  187. Phytoplankton phosphorus nutrition

    Article • Journal of Phycology, January 2016, Wiley

    Dr Senjie Lin

  188. PhnW-PhnX Pathway in Dinoflagellates Not Functional to Utilize Extracellular Phosphonates

    Article • Frontiers in Marine Science, January 2016, Frontiers

    Dr Senjie Lin

  189. Spliced leader RNA trans-splicing discovered in copepods

    Article • Scientific Reports, December 2015, Springer Science + Business Media

    Dr Senjie Lin

  190. Space station image captures a red tide ciliate bloom at high spectral and spatial resolution

    Article • Proceedings of the National Academy of Sciences, November 2015, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  191. The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

    Article • Science, November 2015, American Association for the Advancement of Science

    Dr Senjie Lin

  192. Rapidly diverging evolution of an atypical alkaline phosphatase (PhoAaty) in marine phytoplankton: insights from dinoflagellate alkaline phosphatases

    Article • Frontiers in Microbiology, August 2015, Frontiers

    Dr Senjie Lin

  193. A novel mutation from gene splicing of a voltage-gated sodium channel in a marine copepod and its potential effect on channel function

    Article • Journal of Experimental Marine Biology and Ecology, August 2015, Elsevier

    Dr Senjie Lin

  194. An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages

    Article • PLOS One, July 2015, PLOS

    Dr Senjie Lin

  195. Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae)

    Article • PLOS One, July 2015, PLOS

    Dr Senjie Lin

  196. Effects of phosphorus deficiency and adenosine 5′-triphosphate (ATP) on growth and cell cycle of the dinoflagellate Prorocentrum donghaiense

    Article • Harmful Algae, July 2015, Elsevier

    Dr Senjie Lin

  197. Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum

    Article • Frontiers in Microbiology, June 2015, Frontiers

    Dr Senjie Lin

  198. Fukuyoa paulensis gen. et sp. nov., a New Genus for the Globular Species of the Dinoflagellate Gambierdiscus (Dinophyceae)

    Article • PLOS One, April 2015, PLOS

    Dr Fernando Gomez, Dr Senjie Lin

  199. Molecular analysis of in situ diets of coral reef copepods: evidence of terrestrial plant detritus as a food source in Sanya Bay, China

    Article • Journal of Plankton Research, March 2015, Oxford University Press (OUP)

    Dr Senjie Lin

  200. Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom

    Article • Harmful Algae, February 2015, Elsevier

    Dr Senjie Lin

  201. Light-Promoted Rhodopsin Expression and Starvation Survival in the Marine Dinoflagellate Oxyrrhis marina

    Article • PLOS One, December 2014, PLOS

    Dr Senjie Lin

  202. Suppression subtraction hybridization analysis revealed regulation of some cell cycle and toxin genes in Alexandrium catenella by phosphate limitation

    Article • Harmful Algae, October 2014, Elsevier

    Dr Senjie Lin

  203. Detecting In Situ Copepod Diet Diversity Using Molecular Technique: Development of a Copepod/Symbiotic Ciliate-Excluding Eukaryote-Inclusive PCR Protocol

    Article • PLOS One, July 2014, PLOS

    Dr Senjie Lin

  204. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

    Article • PLoS Biology, June 2014, PLOS

    Professor David R Smith, Dr Senjie Lin

  205. Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

    Article • Genome Biology and Evolution, May 2014, Oxford University Press (OUP)

    Dr Senjie Lin

  206. DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species

    Article • Harmful Algae, January 2014, Elsevier

    Dr Senjie Lin

  207. Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions

    Article • Microorganisms, October 2013, MDPI AG

    Dr Senjie Lin

  208. Signal Recognition Particle RNA in Dinoflagellates and the Perkinsid Perkinsus marinus

    Article • Protist, September 2013, Elsevier

    Dr Senjie Lin

  209. Apical Groove Type and Molecular Phylogeny Suggests Reclassification of Cochlodinium geminatum as Polykrikos geminatum

    Article • PLOS One, August 2013, PLOS

    Dr Senjie Lin

  210. Tandem Repeats, High Copy Number and Remarkable Diel Expression Rhythm of Form II RuBisCO in Prorocentrum donghaiense (Dinophyceae)

    Article • PLOS One, August 2013, PLOS

    Dr Senjie Lin

  211. An improved method for achieving high-quality RNA for copepod transcriptomic studies

    Article • Journal of Experimental Marine Biology and Ecology, August 2013, Elsevier

    Dr Senjie Lin

  212. Proof that Dinoflagellate Spliced Leader (DinoSL) is a Useful Hook for Fishing Dinoflagellate Transcripts from Mixed Microbial Samples: Symbiodinium kawagutii as a Case Study

    Article • Protist, July 2013, Elsevier

    Dr Senjie Lin

  213. Cyclin B gene and its cell cycle-dependent differential expression in the toxic dinoflagellate Alexandrium fundyense Atama Group I/Clade I

    Article • Harmful Algae, June 2013, Elsevier

    Dr Senjie Lin

  214. The PsbO homolog from Symbiodinium kawagutii (Dinophyceae) characterized using biochemical and molecular methods

    Article • Photosynthesis Research, May 2013, Springer Science + Business Media

    Dr Senjie Lin

  215. Polyadenylation of 18S rRNA in algae1

    Article • Journal of Phycology, May 2013, Wiley

    Dr Senjie Lin

  216. Trichodesmium– a widespread marine cyanobacterium with unusual nitrogen fixation properties

    Article • FEMS Microbiology Reviews, May 2013, Oxford University Press (OUP)

    Dr Senjie Lin

  217. Transcriptomic Study Reveals Widespread Spliced Leader Trans-Splicing, Short 5′-UTRs and Potential Complex Carbon Fixation Mechanisms in the Euglenoid Alga Eutreptiella sp.

    Article • PLOS One, April 2013, PLOS

    Dr Senjie Lin

  218. Ectobiotic and Endobiotic Bacteria Associated with Eutreptiella sp. Isolated from Long Island Sound

    Article • Protist, January 2013, Elsevier

    Dr Senjie Lin

  219. Heat shock effects and population survival in the polar dinoflagellate Polarella glacialis

    Article • Journal of Experimental Marine Biology and Ecology, December 2012, Elsevier

    Dr Senjie Lin

  220. Porphyra(Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism

    Article • Journal of Phycology, October 2012, Wiley

    Dr Cheong Xin Chan, Dr Senjie Lin

  221. Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene

    Article • PLOS One, September 2012, PLOS

    Dr Senjie Lin

  222. Effect of Inorganic and Organic Ligands on the Bioavailability of Methylmercury as Determined by Using amer-luxBioreporter

    Article • Applied and Environmental Microbiology, August 2012, ASM Journals

    Dr Senjie Lin

  223. Determining the native region of the putatively invasive ascidian Didemnum vexillum Kott, 2002

    Article • Journal of Experimental Marine Biology and Ecology, July 2012, Elsevier

    Dr Senjie Lin

  224. Alkaline phosphatase gene sequence characteristics and transcriptional regulation by phosphate limitation in Karenia brevis (Dinophyceae)

    Article • Harmful Algae, May 2012, Elsevier

    Dr Senjie Lin

  225. MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)1

    Article • Journal of Phycology, April 2012, Wiley

    Dr Cheong Xin Chan, Dr Senjie Lin

  226. Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of “Alexandrium tamarense” species complex

    Article • Harmful Algae, April 2012, Elsevier

    Dr Senjie Lin

  227. Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems

    Article • Plant Physiology, February 2012, American Society of Plant Biologists (ASPB)

    Dr Cheong Xin Chan, Dr Senjie Lin

  228. High Sequence Variability, Diverse Subcellular Localizations, and Ecological Implications of Alkaline Phosphatase in Dinoflagellates and Other Eukaryotic Phytoplankton

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Dr Senjie Lin

  229. Nuclear, Mitochondrial and Plastid Gene Phylogenies of Dinophysis miles (Dinophyceae): Evidence of Variable Types of Chloroplasts

    Article • PLOS One, December 2011, PLOS

    Dr Senjie Lin

  230. Bait worm packaging as a potential vector of invasive species

    Article • Biological Invasions, September 2011, Springer Science + Business Media

    Dr Senjie Lin

  231. Alkaline Phosphatase Gene Sequence And Transcriptional Regulation By Phosphate Limitation In Amphidinium Carterae (Dinophyceae)1

    Article • Journal of Phycology, August 2011, Wiley

    Dr Senjie Lin

  232. Photosynthetic efficiency, cell volume, and elemental stoichiometric ratios in Thalassirosira weissflogii under phosphorus limitation

    Article • Chinese Journal of Oceanology and Limnology, August 2011, Springer Science + Business Media

    Dr Senjie Lin

  233. Genomic understanding of dinoflagellates

    Article • Research in Microbiology, July 2011, Elsevier

    Dr Senjie Lin

  234. Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates

    Article • PLOS One, May 2011, PLOS

    Dr Senjie Lin

  235. Upwelling ecosystem in the southern Taiwan Strait

    Article • Continental Shelf Research, May 2011, Elsevier

    Dr Senjie Lin

  236. Diatom to dinoflagellate shift in the summer phytoplankton community in a bay impacted by nuclear power plant thermal effluent

    Article • Marine Ecology Progress Series, March 2011, Inter-Research Science Center

    Dr Senjie Lin

  237. Cloning and analysis of the full-length Rubisco large subunit (rbc L) cDNA from Ulva linza (Chlorophyceae, Chlorophyta)

    Article • Botanica Marina, January 2011, De Gruyter

    Dr Senjie Lin

  238. Introns, Alternative Splicing, Spliced Leader trans-Splicing and Differential Expression of pcna and cyclin in Perkinsus marinus

    Article • Protist, January 2011, Elsevier

    Dr Senjie Lin

  239. Spliced leader–based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

    Article • Proceedings of the National Academy of Sciences, November 2010, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  240. Two Functionally Distinct Ciliates Dwelling in Acropora Corals in the South China Sea near Sanya, Hainan Province, China

    Article • Applied and Environmental Microbiology, June 2010, ASM Journals

    Dr Senjie Lin

  241. Serious Overestimation in Quantitative PCR by Circular (Supercoiled) Plasmid Standard: Microalgal pcna as the Model Gene

    Article • PLOS One, March 2010, PLOS

    Dr Senjie Lin

  242. Phytoplankton dynamics in and near the highly eutrophic Pearl River Estuary, South China Sea

    Article • Continental Shelf Research, February 2010, Elsevier

    Dr Senjie Lin

  243. Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

    Article • PLOS One, September 2009, PLOS

    Dr Senjie Lin

  244. High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding

    Article • Applied and Environmental Microbiology, June 2009, ASM Journals

    Dr Senjie Lin

  245. Dinoflagellate Spliced Leader RNA Genes Display a Variety of Sequences and Genomic Arrangements

    Article • Molecular Biology and Evolution, April 2009, Oxford University Press (OUP)

    Dr Senjie Lin

  246. Two flavodoxin genes in Trichodesmium (Oscillatoriales, Cyanophyceae): Remarkable sequence divergence and possible functional diversification

    Article • Journal of Experimental Marine Biology and Ecology, March 2009, Elsevier

    Dr Senjie Lin

  247. Retrieval of Missing Spliced Leader in Dinoflagellates

    Article • PLOS One, January 2009, PLOS

    Dr Senjie Lin

  248. Genetic conspecificity of the worldwide populations of Didemnum vexillum Kott, 2002

    Article • Aquatic Invasions, January 2009, Regional Euro-Asian Biological Invasions Centre Oy (REABIC)

    Dr Senjie Lin

  249. High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding

    Article • Applied and Environmental Microbiology, December 2008, ASM Journals

    Dr Senjie Lin

  250. Development of a PNA probe for the detection of the toxic dinoflagellate Takayama pulchella

    Article • Harmful Algae, June 2008, Elsevier

    Dr Senjie Lin

  251. mRNA EDITING AND SPLICED‐LEADER RNA TRANS‐SPLICING GROUPS OXYRRHIS, NOCTILUCA, HETEROCAPSA, AND AMPHIDINIUM AS BASAL LINEAGES OF DINOFLAGELLATES1

    Article • Journal of Phycology, May 2008, Wiley

    Dr Senjie Lin

  252. Geographic distribution of Karlodinium veneficum in the US east coast as detected by ITS-ferredoxin real-time PCR assay

    Article • Journal of Plankton Research, May 2008, Oxford University Press (OUP)

    Dr Senjie Lin

  253. Bioremediation efficiency in the removal of dissolved inorganic nutrients by the red seaweed, Porphyra yezoensis, cultivated in the open sea

    Article • Water Research, February 2008, Elsevier

    Dr Senjie Lin

  254. Use of molecular markers for early warning detection of harmful algal blooms

    Article • International Journal of Environment and Pollution, January 2008, Inderscience Publishers

    Dr Senjie Lin

  255. Mitochondrial cob and cox1 Genes and Editing of the Corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with Special Reference to the Phylogenetic Position of the Genus Dinophysis

    Article • Applied and Environmental Microbiology, December 2007, ASM Journals

    Dr Senjie Lin

  256. A Three-Gene Dinoflagellate Phylogeny Suggests Monophyly of Prorocentrales and a Basal Position for Amphidinium and Heterocapsa

    Article • Journal of Molecular Evolution, September 2007, Springer Science + Business Media

    Dr Senjie Lin

  257. Spliced leader RNA trans-splicing in dinoflagellates

    Article • Proceedings of the National Academy of Sciences, March 2007, Proceedings of the National Academy of Sciences

    Dr Senjie Lin

  258. Development of a Dinoflagellate-Oriented PCR Primer Set Leads to Detection of Picoplanktonic Dinoflagellates from Long Island Sound

    Article • Applied and Environmental Microbiology, August 2006, ASM Journals

    Dr Senjie Lin

  259. Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction

    Article • Journal of Plankton Research, July 2006, Oxford University Press (OUP)

    Dr Senjie Lin

  260. POTENTIAL UTILITY OF MITOCHONDRIAL CYTOCHROME B AND ITS MRNA EDITING IN RESOLVING CLOSELY RELATED DINOFLAGELLATES: A CASE STUDY OF PROROCENTRUM (DINOPHYCEAE)1

    Article • Journal of Phycology, May 2006, Wiley

    Dr Senjie Lin

  261. THE SMALLEST DINOFLAGELLATE GENOME IS YET TO BE FOUND: A COMMENT ON LAJEUNESSE ET AL. “SYMBIODINIUM (PYRRHOPHYTA) GENOME SIZES (DNA CONTENT) ARE SMALLEST AMONG DINOFLAGELLATES”1

    Article • Journal of Phycology, May 2006, Wiley

    Dr Senjie Lin

  262. Isolation and Characterization of Proliferating Cell Nuclear Antigen from the Dinoflagellate Pfiesteria piscicida

    Article • Journal of Eukaryotic Microbiology, January 2006, Wiley

    Dr Senjie Lin

  263. Development of a cob-18S rRNA Gene Real-Time PCR Assay for Quantifying Pfiesteria shumwayae in the Natural Environment

    Article • Applied and Environmental Microbiology, November 2005, ASM Journals

    Dr Senjie Lin

  264. Mitochondrial Cytochrome b mRNA Editing in Dinoflagellates: Possible Ecological and Evolutionary Associations?

    Article • Journal of Eukaryotic Microbiology, October 2005, Wiley

    Dr Senjie Lin

  265. ISOLATION OF MITOCHONDRIAL CYTOCHROME B GENE AND DEVELOPMENT OF A REAL-TIME QUANTITATIVE PCR ASSAY FOR DETECTING NEOPARAMOEBA AESTUARINA

    Article • Journal of Shellfish Research, October 2005, National Shellfisheries Association

    Dr Senjie Lin

  266. PHYLOGENY OF DINOFLAGELLATES BASED ON MITOCHONDRIAL CYTOCHROME B AND NUCLEAR SMALL SUBUNIT RDNA SEQUENCE COMPARISONS1

    Article • Journal of Phycology, March 2005, Wiley

    Dr Senjie Lin

  267. INTENSE GRAZING AND PREY‐DEPENDENT GROWTH OF PFIESTERIA PISCICIDA (DINOPHYCEAE)1

    Article • Journal of Phycology, November 2004, Wiley

    Dr Senjie Lin

  268. Marine planktonic ciliates that prey on macroalgae and enslave their chloroplasts

    Article • Limnology and Oceanography, January 2004, Wiley

    Dr Senjie Lin

  269. COMPLEX GENE STRUCTURE OF THE FORM II RUBISCO IN THE DINOFLAGELLATE PROROCENTRUM MINIMUM (DINOPHYCEAE)1

    Article • Journal of Phycology, November 2003, Wiley

    Dr Senjie Lin

  270. Development of an immunofluorescence technique for detecting Pfiesteria piscicida

    Article • Harmful Algae, August 2003, Elsevier

    Dr Senjie Lin

  271. Mitogen-Activated Protein Kinase in Pfiesteria piscicida and Its Growth Rate-Related Expression

    Article • Applied and Environmental Microbiology, January 2003, ASM Journals

    Dr Senjie Lin

  272. EFFECTS OF LIGHT ON PHOTOSYNTHESIS, GRAZING, AND POPULATION DYNAMICS OF THE HETEROTROPHIC DINOFLAGELLATE PFIESTERIA PISCICIDA (DINOPHYCEAE)1

    Article • Journal of Phycology, August 2002, Wiley

    Dr Senjie Lin

  273. Widespread and Extensive Editing of Mitochondrial mRNAS in Dinoflagellates

    Article • Journal of Molecular Biology, July 2002, Elsevier

    Dr Senjie Lin

  274. Detection and Quantification of Pfiesteria piscicida by Using the Mitochondrial Cytochrome b Gene

    Article • Applied and Environmental Microbiology, February 2002, ASM Journals

    Dr Senjie Lin

  275. MOLECULAR CLONING AND EXPRESSION OF THE PROLIFERATING CELL NUCLEAR ANTIGEN GENE FROM THE COCCOLITHOPHORID PLEUROCHRYSIS CARTERAE (HAPTOPHYCEAE)1

    Article • Journal of Phycology, February 2002, Wiley

    Paul Corstjens, Dr Senjie Lin

  276. Cytological and biochemical responses of Dunaliella tertiolecta (Volvocales, Chlorophyta) to iron stress

    Article • Phycologia, September 2001, Taylor & Francis

    Dr Senjie Lin

  277. Molecular Cloning and Antiserum Development of Cyclin Box in the Brown Tide Alga Aureococcus anophagefferens

    Article • Marine Biotechnology, November 2000, Springer Science + Business Media

    Dr Senjie Lin

  278. A PSTTLRE-form of cdc2-like gene in the marine microalga Dunaliella tertiolecta

    Article • Gene, October 1999, Elsevier

    Dr Senjie Lin

  279. Whole-Cell Immunolocalization of Nitrogenase in Marine Diazotrophic Cyanobacteria, Trichodesmium spp

    Article • Applied and Environmental Microbiology, August 1998, ASM Journals

    Dr Senjie Lin

  280. Rubisco of Dunaliella tertiolecta is redistributed between the pyrenoid and the stroma as a light?/shade response

    Article • Marine Biology, February 1997, Springer Science + Business Media

    Dr Senjie Lin

  281. Can a non-terminal event of the cell cycle be used for phytoplankton species-specific growth rate estimation?

    Article • Marine Ecology Progress Series, January 1997, Inter-Research Science Center

    Dr Senjie Lin

  282. Pyrenoid localization of Rubisco in relation to the cell cycle and growth phase of Dunaliella tertiolecta (Chlorophyceae)

    Article • Phycologia, January 1997, Taylor & Francis

    Dr Senjie Lin

  283. AN EMPIRICAL PROTOCOL FOR WHOLE‐CELL IMMUNOFLUORESCENCE OF MARINE PHYTOPLANKTON1

    Article • Journal of Phycology, December 1996, Wiley

    Dr Senjie Lin

  284. GROWTH CHARACTERISTICS OF MARINE PHYTOPLANKTON DETERMINED BY CELL CYCLE PROTEINS: THE CELL CYCLE OF ETHMODISCUS REX (BACILLARIOPHYCEAE) IN THE SOUTHWESTERN NORTH ATLANTIC OCEAN AND CARIBBEAN SEA1

    Article • Journal of Phycology, October 1995, Wiley

    Dr Senjie Lin

  285. GROWTH CHARACTERISTICS OF PHYTOPLANKTON DETERMINED BY CELL CYCLE PROTEINS: PCNA IMMUNOSTAINING OF DUNALIELLA TERTIOLECTA (CHLOROPHYCEAE)1

    Article • Journal of Phycology, June 1995, Wiley

    Dr Senjie Lin

  286. DETECTION OF PROLIFERATING CELL NUCLEAR ANTIGEN ANALOG IN FOUR SPECIES OF MARINE PHYTOPLANKTON1

    Article • Journal of Phycology, June 1994, Wiley

    Dr Senjie Lin