All Stories

  1. Plausible Blockers of Spike RBD in SARS-CoV2 – Molecular Design and Underlying Interaction Dynamics from High-Level Structural Descriptors

    Article • March 2021, MDPI AG

    Sankar Basu

  2. Criticality in the conformational phase transition among self-similar groups in intrinsically disordered proteins: Probed by salt-bridge dynamics

    Article • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, October 2020, Elsevier

    Sankar Basu

  3. Plausible Blockers of Spike RBD in SARS-CoV2 – Molecular Design and Underlying Interaction Dynamics from High-Level Structural Descriptors

    Article • September 2020, MDPI AG

    Sankar Basu

  4. A comprehensive computational study of amino acid interactions in membrane proteins

    Article • Scientific Reports, August 2019, Springer Science + Business Media

    Mame Ndew Mbaye, Sankar Basu

  5. Graph coloring: a novel heuristic based on trailing path—properties, perspective and applications in structured networks

    Article • Soft Computing, August 2019, Springer Science + Business Media

    Sankar Basu

  6. DelPhi Suite: New Developments and Review of Functionalities

    Article • Journal of Computational Chemistry, June 2019, Wiley

    Sankar Basu

  7. Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases

    Article • International Journal of Molecular Sciences, January 2019, MDPI AG

    Sankar Basu

  8. Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases

    Article • January 2019, MDPI AG

    Sankar Basu

  9. Structural Perspective on Revealing and Altering Molecular Functions of Genetic Variants Linked with Diseases

    Article • January 2019, MDPI AG

    Sankar Basu

  10. Structural Perspective on Revealing and Altering Molecular Mechanisms of Genetic Variants Linked with Diseases

    Article • December 2018, MDPI AG

    Sankar Basu

  11. DelPhiPKa: Including salt in the calculations and enabling polar residues to titrate

    Article • Proteins Structure Function and Bioinformatics, October 2018, Wiley

    Sankar Basu

  12. Inner-View of Nanomaterial Incited Protein Conformational Changes: Insights into Designable Interaction

    Article • Research, September 2018, American Association for the Advancement of Science

    Sankar Basu

  13. Graph Coloring: A Novel Heuristic Based on Trailing Path; Properties, Perspective and Applications in Structured Networks

    Article • May 2018, MDPI AG

    Sankar Basu

  14. Salt-bridge dynamics in intrinsically disordered proteins: A trade-off between electrostatic interactions and structural flexibility

    Article • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, May 2018, Elsevier

    Sankar Basu

  15. CPdock: the complementarity plot for docking of proteins: implementing multi-dielectric continuum electrostatics

    Article • Journal of Molecular Modeling, December 2017, Springer Science + Business Media

    Sankar Basu

  16. Nitric oxide sensing by chlorophyll a

    Article • Analytica Chimica Acta, September 2017, Elsevier

    Sankar Basu, PROF. KOUSTUBH PANDA

  17. Salt-bridge networks within globular and disordered proteins: characterizing trends for designable interactions

    Article • Journal of Molecular Modeling, June 2017, Springer Science + Business Media

    Sankar Basu

  18. Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins

    Article • Journal of Computer-Aided Molecular Design, April 2017, Springer Science + Business Media

    Sankar Basu

  19. RNAHelix: computational modeling of nucleic acid structures with Watson–Crick and non-canonical base pairs

    Article • Journal of Computer-Aided Molecular Design, January 2017, Springer Science + Business Media

    Sankar Basu

  20. DockQ: A Quality Measure for Protein-Protein Docking Models

    Article • PLOS One, August 2016, PLOS

    Sankar Basu

  21. Finding correct protein–protein docking models using ProQDock

    Article • Bioinformatics, June 2016, Oxford University Press (OUP)

    Sankar Basu

  22. The Unfolding MD Simulations of Cyclophilin: Analyzed by Surface Contact Networks and Their Associated Metrics

    Article • PLOS One, November 2015, PLOS

    Sankar Basu

  23. Equilibrium unfolding of cyclophilin from Leishmania donovani: Characterization of intermediate states

    Article • International Journal of Biological Macromolecules, August 2014, Elsevier

    Sankar Basu

  24. Analysis of stacking overlap in nucleic acid structures: algorithm and application

    Article • Journal of Computer-Aided Molecular Design, July 2014, Springer Science + Business Media

    Sankar Basu

  25. Self-Complementarity within Proteins: Bridging the Gap between Binding and Folding

    Article • Biophysical Journal, June 2012, Elsevier

    Sankar Basu

  26. Mapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifs

    Article • BMC Bioinformatics, January 2011, Springer Science + Business Media

    Sankar Basu