All Stories

  1. EpiRanha: Hunting for Epitope Similarity with a Structure- and Residue-Aware Graph Neural Network

    Article • April 2026, openRxiv

    Mr Samuel Demharter

  2. NAStructuralDB : structural database to facilitate computational studies of molecular modeling and recognition of proteins with special focus on antibody–antigen interactions

    Article • mAbs, March 2026, Taylor & Francis

    Mr Samuel Demharter

  3. Transcriptomics analysis reveals molecular alterations underpinning spaceflight dermatology

    Article • Communications Medicine, June 2024, Springer Science + Business Media

    Mr Samuel Demharter

  4. A single dose of cocaine rewires the 3D genome structure of midbrain dopamine neurons

    Article • May 2024, Cold Spring Harbor Laboratory Press

    Mr Samuel Demharter

  5. Explainable machine learning identifies multi-omics signatures of muscle response to spaceflight in mice

    Article • npj Microgravity, December 2023, Springer Science + Business Media

    Mr Samuel Demharter

  6. More than a Feeling: Dermatological Changes Impacted by Spaceflight

    Article • February 2023, Research Square

    Mr Samuel Demharter

  7. Ductal keratin 15+ luminal progenitors in normal breast exhibit a basal-like breast cancer transcriptomic signature

    Article • npj Breast Cancer, July 2022, Springer Science + Business Media

    Mr Samuel Demharter

  8. Identifying interactions in omics data for clinical biomarker discovery using symbolic regression

    Article • Bioinformatics, June 2022, Oxford University Press (OUP)

    Mr Samuel Demharter

  9. Identifying interactions in omics data for clinical biomarker discovery

    Article • January 2022, Cold Spring Harbor Laboratory Press

    Mr Samuel Demharter

  10. Coordinated maintenance of H3K36/K27 methylation by histone demethylases preserves germ cell identity and immortality

    Article • Cell Reports, November 2021, Elsevier

    Mr Samuel Demharter

  11. Author Correction: Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis

    Article • Nature Communications, November 2020, Springer Science + Business Media

    Mr Samuel Demharter

  12. Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis

    Article • Nature Communications, October 2020, Springer Science + Business Media

    Mr Samuel Demharter

  13. Complex IV subunit isoform COX 6A2 protects fast‐spiking interneurons from oxidative stress and supports their function

    Article • The EMBO Journal, August 2020, EMBO

    Mr Samuel Demharter

  14. Joint analysis of heterogeneous single-cell RNA-seq dataset collections

    Article • Nature Chemical Biology, July 2019, Springer Science + Business Media

    Mr Samuel Demharter

  15. HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo

    Article • Journal of Chemical Information and Modeling, May 2019, American Chemical Society (ACS)

    Mr Samuel Demharter

  16. Tracing the origin of adult intestinal stem cells

    Article • Nature, May 2019, Springer Science + Business Media

    Mr Samuel Demharter

  17. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing

    Article • Journal of Anatomy, January 2019, Wiley

    Mr Samuel Demharter, Professor Zoltan Molnar

  18. Wiring together large single-cell RNA-seq sample collections

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Mr Samuel Demharter

  19. In silico structural modeling of multiple epigenetic marks on DNA

    Article • Bioinformatics, September 2017, Oxford University Press (OUP)

    Mr Samuel Demharter

  20. Ten simple rules for surviving an interdisciplinary PhD

    Article • PLoS Computational Biology, May 2017, PLOS

    Mr Samuel Demharter

  21. Modeling Functional Motions of Biological Systems by Customized Natural Moves

    Article • Biophysical Journal, August 2016, Elsevier

    Mr Samuel Demharter

  22. Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo

    Article • Bioinformatics, September 2015, Oxford University Press (OUP)

    Mr Samuel Demharter

  23. Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands

    Article • Cell, March 2015, Elsevier

    Mr Samuel Demharter

  24. Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations

    Article • Briefings in Bioinformatics, February 2015, Oxford University Press (OUP)

    Mr Samuel Demharter