All Stories

  1. Thermodynamic principles govern evolutionary tradeoffs by regulating allostery

    Article • October 2025, Cold Spring Harbor Laboratory Press

    Cang Hui, Rukman Hertadi

  2. Enhanced production of polyhydroxybutyrate in recombinant Escherichia coli for sustainable material

    Article • Next Materials, October 2025, Elsevier

    Rukman Hertadi

  3. Rhamnolipid-Modified PHB–Ectoine Nanoparticles for Multifunctional Skin Protection Against UVB, Irritation, and Bacteria

    Article • ACS Omega, March 2025, American Chemical Society (ACS)

    Rukman Hertadi

  4. Study on the development of nanoparticles based on levan for oral insulin delivery

    Article • Biomedical Materials, February 2025, Institute of Physics Publishing

    Rukman Hertadi

  5. Engineered acetylated inulin nanoparticles for enhanced oral insulin delivery: sustained release, structural stability, and in vivo efficacy

    Article • RSC Advances, January 2025, Royal Society of Chemistry

    Rukman Hertadi

  6. Development of inulin nanocarrier for effective oral delivery of insulin: synthesize, optimization, characterization, and biophysical study

    Article • Journal of Biomaterials Science Polymer Edition, December 2024, Taylor & Francis

    Rukman Hertadi

  7. Leveraging protein language model embeddings and logistic regression for efficient and accurate in-silico acidophilic proteins classification

    Article • Computational Biology and Chemistry, October 2024, Elsevier

    Rukman Hertadi

  8. Designing a Novel Multiepitope Vaccine from the Human Papilloma Virus E1 and E2 Proteins for Indonesia with Immunoinformatics and Molecular Dynamics Approaches

    Article • ACS Omega, March 2024, American Chemical Society (ACS)

    Rukman Hertadi

  9. Green synthesis of copper ions nanoparticles functionalized with rhamnolipid as potential antibacterial agent for pathogenic bacteria

    Article • Heliyon, January 2024, Elsevier

    Rukman Hertadi

  10. BiCaps-DBP: Predicting DNA-binding proteins from protein sequences using Bi-LSTM and a 1D-capsule network

    Article • Computers in Biology and Medicine, September 2023, Elsevier

    Rukman Hertadi

  11. Development of Chimeric Hepatitis B (HBV) – Norovirus (NoV) P particle as candidate vaccine against Hepatitis B and norovirus infection

    Article • Vaccine X, August 2023, Elsevier

    Rukman Hertadi

  12. Fabrication of physically crosslink Levan-lsbl-bk1/PVA electrospun nanofiber

    Article • European Polymer Journal, August 2023, Elsevier

    Rukman Hertadi

  13. Production of poly-(R)-3-hydroxybutyrate from halophilic bacterium Salinivibrio sp. utilizing palm oil mill effluent as a carbon source

    Article • Biocatalysis and Agricultural Biotechnology, January 2023, Elsevier

    Rukman Hertadi

  14. Graphene quantum dots functionalised with rhamnolipid produced from bioconversion of palm kernel oil by Pseudomonas stutzeri BK-AB12MT as a photocatalyst

    Article • RSC Advances, January 2023, Royal Society of Chemistry

    Rukman Hertadi

  15. Cloning, Expression, and In Silico Analysis of Class IV Poly-(R)-3-hydroxybutyrate Genes from New Strain of Bacillus thuringiensis TH-01

    Article • HAYATI Journal of Biosciences, March 2022, Bogor Agricultural University

    Rukman Hertadi

  16. The Effects of Microwave-Assisted Pretreatment and Cofermentation on Bioethanol Production from Elephant Grass

    Article • International Journal of Microbiology, November 2020, Wiley

    Rukman Hertadi

  17. Enhancement of antioxidant activity of levan through the formation of nanoparticle systems with metal ions

    Article • Heliyon, June 2020, Elsevier

    Rukman Hertadi

  18. Levan Produced by the Halophilic Bacterium <i>Bacillus licheniformis</i> BK1 as a Nanoparticle for Protein Immobilization

    Article • Indonesian Journal of Chemistry, May 2020, Universitas Gadjah Mada

    Rukman Hertadi

  19. Factors Affecting the Production of Biosurfactants and their Applications in Enhanced Oil Recovery (EOR). A Review

    Article • IOP Conference Series Earth and Environmental Science, October 2019, Institute of Physics Publishing

    Rukman Hertadi

  20. Heterologous Ectoine Production in Escherichia coli: Optimization Using Response Surface Methodology

    Article • International Journal of Microbiology, July 2019, Hindawi Publishing Corporation

    Dr Deana DW Wahyuningrum, Rukman Hertadi

  21. Biosynthesis and Characterization of Bioplastic Polyhydroxybutyrate from Halophilic Bacterium Halomonas elongata BK-AB8

    Article • Key Engineering Materials, July 2019, Trans Tech Publications

    Rukman Hertadi, Rachmawati Rachmawati

  22. Estimating Factors Determining Emulsification Capability of Surfactant-Like Peptide with Coarse-Grained Molecular Dynamics Simulation

    Article • Indonesian Journal of Chemistry, May 2019, Universitas Gadjah Mada

    Rukman Hertadi

  23. Processing of ozonized biodiesel waste to produce biosurfactant using Pseudomonas aeruginosa for enhanced oil recovery

    Article • January 2019, American Institute of Physics

    Rukman Hertadi

  24. Optimization of rhamnolipid production from bioconversion of palm oil mill effluent (POME) waste by Pseudomonas stutzeri BK-AB12 using response surface methodology

    Article • IOP Conference Series Earth and Environmental Science, December 2018, Institute of Physics Publishing

    Rukman Hertadi

  25. Production of ectoine by Halomonas elongata BK-AG25 using osmotic shock technique

    Article • IOP Conference Series Earth and Environmental Science, December 2018, Institute of Physics Publishing

    Rukman Hertadi

  26. The Use of Response Surface Method in Optimization of Levan Production by Heterologous Expressed Levansucrase from Halophilic Bacteria Bacillus licheniformis BK2

    Article • IOP Conference Series Earth and Environmental Science, December 2018, Institute of Physics Publishing

    Rukman Hertadi

  27. Production and characterization of rhamnolipids from bioconversion of palm oil mill effluent by the halophilic bacterium Pseudomonas stutzeri BK‐AB12

    Article • Environmental Progress & Sustainable Energy, November 2018, Wiley

    Rukman Hertadi

  28. Bioconversion of Palm Oil into Biosurfactant by Halomonas meridiana BK-AB4 for the Application of Corrosion Inhibitor

    Article • Indonesian Journal of Chemistry, November 2018, Universitas Gadjah Mada

    Rukman Hertadi

  29. Bioconversion of Glycerol to Biosurfactant by Halophilic Bacteria Halomonas elongata BK-AG18

    Article • Indonesian Journal of Chemistry, October 2018, Universitas Gadjah Mada

    Rukman Hertadi

  30. In Silico Study of Phospholipids as An Oral Insulin Delivery System

    Article • Journal of Physics Conference Series, September 2018, Institute of Physics Publishing

    Rukman Hertadi

  31. Stability and Mobility of Lid Lipmnk in Acetonitrile by Molecular Dynamics Simulations Approach

    Article • Biosciences Biotechnology Research Asia, June 2018, Oriental Scientific Publishing Company

    Rukman Hertadi

  32. Molecular modeling on porphyrin derivatives as β5 subunit inhibitor of 20S proteasome

    Article • Computational Biology and Chemistry, June 2018, Elsevier

    Rukman Hertadi

  33. Cloning of acetyl-CoA acetyltransferase gene from Halomonas elongata BK-AG18 and in silico analysis of its gene product

    Article • Indonesian Journal of Biotechnology, January 2018, Universitas Gadjah Mada

    Rukman Hertadi

  34. Determination of activities of human carbonic anhydrase II inhibitors from curcumin analogs

    Article • Tropical Journal of Pharmaceutical Research, May 2017, African Journals Online (AJOL)

    Rukman Hertadi

  35. Cloning and Sequence Analysis of Lipase Gene of Halophilic Bacteria Isolated from Mud Crater of Bledug Kuwu, Central Java, Indonesia

    Article • Biosciences Biotechnology Research Asia, December 2015, Oriental Scientific Publishing Company

    Rukman Hertadi

  36. A new strategy of glucose supply in a microbial fermentation model

    Article • January 2015, American Institute of Physics

    Rukman Hertadi

  37. Docking and Molecular Dynamics Simulation of Carbonic Anhydrase II Inhibitors from Phenolic and Flavonoid Group

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  38. Effect of Ca2+ Ion to the Activity and Stability of Lipase Isolated from Chromohalobacter japonicus BK-AB18

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  39. Effect of Glycerol as Carbon Source for Biosurfactant Production by Halophilic Bacteria Pseudomonas Stutzeri BK-AB12

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  40. Elucidation of Active Site Protective Residues in Rhizomucor miehei Lipase by Targeted Molecular Dynamics Approach

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  41. Isolation and Characterization of Levan from Moderate Halophilic Bacteria Bacillus licheniformis BK AG21

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  42. Isolation and Characterization of Organic-Solvent Stable Protease Isolated by Pseudomonas stutzeri BK AB-12

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  43. Metabolic regulation and maximal reaction optimization in the central metabolism of a yeast cell

    Article • January 2015, American Institute of Physics

    Rukman Hertadi

  44. Screening and Characterization of Levan Secreted by Halophilic Bacterium of Halomonas and Chromohalobacter Genuses Originated from Bledug Kuwu Mud Crater

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  45. Structural Analysis of Halophilic Lipases Isolated from Bledug Kuwu Mud Crater, Purwodadi-Grobogan, Indonesia: A Structural Bioinformatics Study

    Article • Procedia Chemistry, January 2015, Elsevier

    Rukman Hertadi

  46. Effects of time delay on the dynamic of kinetic model of microbial fermentation process

    Article • ANZIAM Journal, October 2014, Australian Mathematical Publishing Association, Inc.

    Rukman Hertadi

  47. EFFECTS OF TIME DELAY ON THE DYNAMICS OF A KINETIC MODEL OF A MICROBIAL FERMENTATION PROCESS

    Article • The ANZIAM Journal, April 2014, Cambridge University Press

    Rukman Hertadi

  48. Simple and Easy Method to Synthesize Chicken Eggshell Based Hydroxyapatite

    Article • Advanced Materials Research, February 2014, Trans Tech Publications

    Rukman Hertadi

  49. Removal of humic acid from peat water using untreated powdered eggshell as a low cost adsorbent

    Article • International Journal of Environmental Science and Technology, February 2013, Springer Science + Business Media

    Rukman Hertadi

  50. The Role of Electrostatic Interactions on Klentaq1 Insight for Domain Separation

    Article • Bioinformatics and Biology Insights, January 2012, SAGE Publications

    Rukman Hertadi

  51. The Role of Interface Domain Interactions on Thermal Stability of DNA polymerase I ITB-1

    Article • The Open Structural Biology Journal, April 2009, Bentham Science Publishers

    Rukman Hertadi

  52. Molecular Dynamics Analysis of Thermostable DNA Pol I ITB-1

    Article • Microbiology Indonesia, December 2007, Indonesian Society for Microbiology

    Rukman Hertadi

  53. Dynamics of Protein Extraction and Extension by Force Spectroscopy and Molecular Dynamics Simulation

    Article • January 2004, American Institute of Physics

    Rukman Hertadi

  54. Unfolding Mechanics of Multiple OspA Substructures Investigated with Single Molecule Force Spectroscopy

    Article • Journal of Molecular Biology, November 2003, Elsevier

    Rukman Hertadi

  55. Relationship between the stability and the mechanical properties of Myoglobin and Designed globin.

    Article • Seibutsu Butsuri, January 2003, Biophysical Society of Japan

    Rukman Hertadi

  56. Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope

    Article • Protein Science, June 2002, Wiley

    Rukman Hertadi

  57. 1I1130 Unfolding Mechanics of HoloCaM by AFM and Steered Molecular Dynamics Simulation

    Article • Seibutsu Butsuri, January 2002, Biophysical Society of Japan

    Rukman Hertadi

  58. LS1A2 Mechanical strength of single protein molecules studied by molecular dynamics simulations

    Article • Seibutsu Butsuri, January 2002, Biophysical Society of Japan

    Rukman Hertadi