All Stories

  1. Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA

    Article • Emerging Infectious Diseases, March 2023, Centers for Disease Control and Prevention (CDC)

    Dr Pavitra Roychoudhury

  2. Fast SARS-CoV-2 Variant Detection Using Snapback Primer High-Resolution Melting

    Article • Diagnostics, September 2021, MDPI AG

    Dr Pavitra Roychoudhury

  3. Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

    Article • Science Translational Medicine, May 2021, American Association for the Advancement of Science

    Dr Pavitra Roychoudhury

  4. A highly multiplexed droplet digital PCR assay to measure the intact HIV-1 proviral reservoir

    Article • Cell Reports Medicine, April 2021, Elsevier

    Dr Pavitra Roychoudhury

  5. Cryptic transmission of SARS-CoV-2 in Washington state

    Article • Science, October 2020, American Association for the Advancement of Science

    Dr Pavitra Roychoudhury

  6. Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Dr Pavitra Roychoudhury

  7. Gene editing and elimination of latent herpes simplex virus in vivo

    Article • Nature Communications, August 2020, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  8. Tissue memory CD4+ T cells expressing IL-7 receptor-alpha (CD127) preferentially support latent HIV-1 infection

    Article • PLoS Pathogens, April 2020, PLOS

    Dr Pavitra Roychoudhury

  9. Tissue-resident T cell–derived cytokines eliminate herpes simplex virus-2–infected cells

    Article • Journal of Clinical Investigation, April 2020, American Society for Clinical Investigation

    Dr Pavitra Roychoudhury

  10. Large, Stable, Contemporary Interspecies Recombination Events in Circulating Human Herpes Simplex Viruses

    Article • The Journal of Infectious Diseases, April 2019, Oxford University Press (OUP)

    Dr Pavitra Roychoudhury

  11. Elimination of HSV-2 infected cells is mediated predominantly by paracrine effects of tissue-resident T cell derived cytokines

    Article • April 2019, Cold Spring Harbor Laboratory Press

    Dr Pavitra Roychoudhury

  12. Hybrid nanocarriers incorporating mechanistically distinct drugs for lymphatic CD4+ T cell activation and HIV-1 latency reversal

    Article • Science Advances, March 2019, American Association for the Advancement of Science

    Dr Pavitra Roychoudhury

  13. A Fixed Spatial Structure of CD8+T Cells in Tissue during Chronic HSV-2 Infection

    Article • The Journal of Immunology, July 2018, The American Association of Immunologists

    Dr Pavitra Roychoudhury

  14. Viral diversity is an obligate consideration in CRISPR/Cas9 designs for targeting the HIV reservoir

    Article • BMC Biology, July 2018, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  15. Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

    Article • BMC Genomics, March 2018, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  16. CRISPR/Cas9 and Genome Editing for Viral Disease—Is Resistance Futile?

    Article • ACS Infectious Diseases, March 2018, American Chemical Society (ACS)

    Dr Pavitra Roychoudhury

  17. Viral diversity is an obligate consideration in CRISPR/Cas9 designs for HIV cure

    Article • January 2018, Cold Spring Harbor Laboratory Press

    Dr Pavitra Roychoudhury

  18. Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study

    Article • PLoS Medicine, December 2017, PLOS

    Dr Pavitra Roychoudhury

  19. Highly conserved intragenic HSV-2 sequences: Results from next-generation sequencing of HSV-2 UL and US regions from genital swabs collected from 3 continents

    Article • Virology, October 2017, Elsevier

    Dr Pavitra Roychoudhury

  20. Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

    Article • September 2017, Cold Spring Harbor Laboratory Press

    Dr Pavitra Roychoudhury

  21. Genomic and proteomic analysis of Human herpesvirus 6 reveals distinct clustering of acute versus inherited forms and reannotation of reference strain

    Article • August 2017, Cold Spring Harbor Laboratory Press

    Dr Pavitra Roychoudhury

  22. Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses

    Article • Protein Engineering Design and Selection, July 2017, Oxford University Press (OUP)

    Dr Pavitra Roychoudhury

  23. In vivo dynamics of AAV-mediated gene delivery to sensory neurons of the trigeminal ganglia

    Article • Scientific Reports, April 2017, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  24. Immunological control of HSV by CD8+ tissue-resident memory T cells

    Article • The Journal of Immunology, May 2016, The American Association of Immunologists

    Dr Pavitra Roychoudhury

  25. Pharmacodynamics of anti-HIV gene therapy using viral vectors and targeted endonucleases

    Article • Journal of Antimicrobial Chemotherapy, April 2016, Oxford University Press (OUP)

    Dr Pavitra Roychoudhury

  26. Digital detection of endonuclease mediated gene disruption in the HIV provirus

    Article • Scientific Reports, February 2016, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  27. Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy

    Article • Antiviral Research, February 2016, Elsevier

    Dr Pavitra Roychoudhury

  28. AAV-Mediated Delivery of Zinc Finger Nucleases Targeting Hepatitis B Virus Inhibits Active Replication

    Article • PLOS One, May 2014, PLOS

    Dr Pavitra Roychoudhury

  29. The Impact of Spatial Structure on Viral Genomic Diversity Generated during Adaptation to Thermal Stress

    Article • PLOS One, February 2014, PLOS

    Dr Pavitra Roychoudhury

  30. Fitness benefits of low infectivity in a spatially structured population of bacteriophages

    Article • Proceedings of the Royal Society B Biological Sciences, November 2013, Royal Society Publishing

    Dr Pavitra Roychoudhury

  31. Adaptive regulatory substitutions affect multiple stages in the life cycle of the bacteriophage ϕX174

    Article • BMC Evolutionary Biology, January 2013, Springer Science + Business Media

    Dr Pavitra Roychoudhury

  32. Patient classification based on pre-hospital heart rate variability

    Article • November 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Pavitra Roychoudhury

  33. An observational, prospective study exploring the use of heart rate variability as a predictor of clinical outcomes in pre-hospital ambulance patients

    Article • Resuscitation, September 2008, Elsevier

    Dr Pavitra Roychoudhury

  34. 225: An Observational, Prospective Study Exploring the Use of Heart Rate Variability as a Predictor of Clinical Outcomes in Out-of-Hospital Ambulance Patients

    Article • Annals of Emergency Medicine, April 2008, Elsevier

    Dr Pavitra Roychoudhury