All Stories

  1. Genomic Insights into mcr -Mediated Colistin Resistance in Escherichia coli, Aeromonas veronii , and Enterobacter kobei ...

    Article • Journal of Applied Microbiology, December 2025, Oxford University Press (OUP)

    Muhammad Shafiq

  2. Characterization of Bacterial Spectrum and Antimicrobial Resistance Patterns in Wound Infections from a Chinese Hospital

    Article • Infection and Drug Resistance, November 2025, Taylor & Francis

    Muhammad Shafiq

  3. Peste Des Petits Ruminants in Pakistan: Current Status, Challenges and Prospects for Vaccine Development

    Article • Vaccines, October 2025, MDPI AG

    Muhammad Shafiq

  4. In vitro and In Vivo Antimicrobial Activity of Melia Azedarach-Mediated Copper Oxide Nanoparticles Against Multidrug-Resistant Klebsiella pneumoniae

    Article • Current Microbiology, October 2025, Springer Science + Business Media

    Dr. Mohsin Khurshid, Muhammad Shafiq

  5. Six-year retrospective analysis of the epidemiology and risk factors of multidrug-resistant bloodstream infections in oncology patients in Jiangxi, China

    Article • Microbiology Spectrum, October 2025, ASM Journals

    Muhammad Shafiq

  6. Integrated insights into gut microbiota and metabolomic landscape in breast cancer patients undergoing adjuvant endocrine therapy

    Article • mSystems, September 2025, ASM Journals

    Muhammad Shafiq

  7. Identifying drug targets and evaluating KLK3-targeted inhibitors for prostate cancer using in-silico and in-vitro approaches

    Article • Medical Oncology, September 2025, Springer Science + Business Media

    Muhammad Shafiq

  8. Communication practices and information exchange for caregivers of children with cancer in Pakistan

    Article • Frontiers in Oncology, September 2025, Frontiers

    Muhammad Shafiq

  9. Ecological consequences of antimicrobial residues and bioactive chemicals on antimicrobial resistance in agroecosystems

    Article • Journal of Advanced Research, August 2025, Elsevier

    Muhammad Shafiq

  10. Epidemiology risk factors and antifungal resistance patterns of Candida in cancer patients in Jiangxi China

    Article • Frontiers in Microbiology, July 2025, Frontiers

    Muhammad Shafiq

  11. A 3-year retrospective analysis of microbial species and key biomarkers associated with wound infections in Shantou Hospital, China

    Article • Frontiers in Cellular and Infection Microbiology, May 2025, Frontiers

    Muhammad Shafiq

  12. Synthesis, Characterization, and Pharmacological Evaluation of Zn 4 O(BDC) 3 : Anticancer, Antidiabetic, and Drug Delivery Potential

    Article • Medicinal Chemistry, May 2025, Bentham Science Publishers

    Muhammad Shafiq

  13. Deep learning-based computational approach for predicting ncRNAs-disease associations in metaplastic breast cancer diagnosis

    Article • BMC Cancer, May 2025, Springer Science + Business Media

    Muhammad Shafiq

  14. Early detection and analysis of accurate breast cancer for improved diagnosis using deep supervised learning for enhanced patient outcomes

    Article • PeerJ Computer Science, April 2025, PeerJ

    Muhammad Shafiq

  15. Comprehensive transcriptomic analysis of myostatin-knockout pigs: insights into muscle growth and lipid metabolism

    Article • Transgenic Research, February 2025, Springer Science + Business Media

    Muhammad Shafiq

  16. Data from Fungal Influences on Cancer Initiation, Progression, and Response to Treatment

    Article • February 2025, American Association for Cancer Research (AACR)

    Muhammad Shafiq

  17. Supplementary file from Fungal Influences on Cancer Initiation, Progression, and Response to Treatment

    Article • February 2025, American Association for Cancer Research (AACR)

    Muhammad Shafiq

  18. The role of agricultural land management in modulating water-carbon interplay within dryland ecological systems

    Article • Agriculture Ecosystems & Environment, February 2025, Elsevier

    Muhammad Shafiq

  19. Advancing Therapeutic Strategies with Polymeric Drug Conjugates for Nucleic Acid Delivery and Treatment

    Article • International Journal of Nanomedicine, January 2025, Taylor & Francis

    Muhammad Shafiq

  20. Exploring the gut microbiota landscape in cow milk protein allergy: Clinical insights and diagnostic implications in pediatric patients

    Article • Journal of Dairy Science, January 2025, American Dairy Science Association

    Muhammad Shafiq

  21. The role of artificial intelligence and machine learning in predicting and combating antimicrobial resistance

    Article • Computational and Structural Biotechnology Journal, January 2025, Elsevier

    Muhammad Shafiq

  22. Exploring the dynamics of gut microbiota, antibiotic resistance, and chemotherapy impact in acute leukemia patients: A comprehensive metagenomic analysis

    Article • Virulence, December 2024, Taylor & Francis

    Muhammad Shafiq

  23. Fungal Influences on Cancer Initiation, Progression, and Response to Treatment

    Article • Cancer Research, November 2024, American Association for Cancer Research (AACR)

    Muhammad Shafiq

  24. Exserohilum rostratum-Mediated Synthesis of Silver Nanoparticles: A Case Study on Their Bioherbicidal Activity Against Leptochloa chinensis (L.) Nees

    Article • Agronomy, November 2024, MDPI AG

    Muhammad Shafiq

  25. Emergence of Carbapenem-Resistant Uropathogenic Escherichia coli (ST405 and ST167) Strains Carrying blaCTX-M-15, blaNDM-5 and Diverse Virulence Factors in Hospitalized Patients

    Article • Pathogens, November 2024, MDPI AG

    Dr. Mohsin Khurshid, Muhammad Shafiq

  26. Integrative metagenomic dissection of last-resort antibiotic resistance genes and mobile genetic elements in hospital wastewaters

    Article • The Science of The Total Environment, November 2024, Elsevier

    Muhammad Shafiq

  27. Toxic effects of heavy metals on crustaceans and associated health risks in humans: a review

    Article • Environmental Chemistry Letters, March 2024, Springer Science + Business Media

    Muhammad Shafiq

  28. The Pathogenesis of Foot-and-Mouth Disease Virus Infection: How the Virus Escapes from Immune Recognition and Elimination

    Article • Archivum Immunologiae et Therapiae Experimentalis, January 2024, De Gruyter

    Muhammad Shafiq

  29. Distribution of Aspergillus species and risk factors for aspergillosis in mainland China: a systematic review

    Article • Therapeutic Advances in Infectious Disease, January 2024, SAGE Publications

    Muhammad Shafiq

  30. Monkeypox Resurgence: A Global Health Challenge Navigating Zoonotic Spillover, Genomic Evolution, and Strategic Response

    Article • Discovery Medicine, January 2024, Discovery Medicine

    Muhammad Shafiq

  31. Six-Year Retrospective Analysis of Epidemiology, Risk Factors, and Antifungal Susceptibilities of Candidiasis from a Tertiary Care Hospital in South China

    Article • Microbiology Spectrum, August 2023, ASM Journals

    Muhammad Shafiq

  32. Cryptococcosis in Southern China: Insights from a Six-Year Retrospective Study in Eastern Guangdong

    Article • Infection and Drug Resistance, July 2023, Taylor & Francis

    Muhammad Shafiq

  33. Characterization of antibiotic resistance genes and mobile elements in extended-spectrum β-lactamase-producing Escherichia coli strains isolated from hospitalized patients in Guangdong, China

    Article • Journal of Applied Microbiology, June 2023, Oxford University Press (OUP)

    Muhammad Shafiq

  34. Metagenomic evidence for antibiotics-driven co-evolution of microbial community, resistome and mobilome in hospital sewage

    Article • Environmental Pollution, June 2023, Elsevier

    Muhammad Shafiq

  35. Metagenomic insights into antibiotic resistance-related changes in microbial communities, resistome and mobilome under a modified A2/O treatment process for hospital sewage

    Article • Journal of Environmental Chemical Engineering, February 2023, Elsevier

    Muhammad Shafiq

  36. Ecological mechanisms of sedimental microbial biodiversity shift and the role of antimicrobial resistance genes in modulating microbial turnover

    Article • Journal of Environmental Management, January 2023, Elsevier

    Dr Edmond Sanganyado, Muhammad Shafiq

  37. Machine Learning Techniques for Antimicrobial Resistance Prediction of Pseudomonas Aeruginosa from Whole Genome Sequence Data

    Article • Computational Intelligence and Neuroscience, January 2023, Wiley

    Muhammad Shafiq

  38. Epidemiology and antifungal susceptibilities of clinically isolated Aspergillus species in South China

    Article • Epidemiology and Infection, January 2023, Cambridge University Press

    Muhammad Shafiq

  39. One Health Approach: Combating Antimicrobial Resistance and Zoonotic Diseases in a Connected World

    Article • International Journal of Agriculture and Biosciences, January 2023, Unique Scientific Publishers

    Muhammad Shafiq

  40. Coexistence of blaNDM–5 and tet(X4) in international high-risk Escherichia coli clone ST648 of human origin in China

    Article • Frontiers in Microbiology, November 2022, Frontiers

    Muhammad Shafiq

  41. Genomic diversity of resistant and virulent factors of Burkholderia pseudomallei clinical strains recovered from Guangdong using whole genome sequencing

    Article • Frontiers in Microbiology, October 2022, Frontiers

    Muhammad Shafiq

  42. Synergistic Activity of Tetrandrine and Colistin against mcr-1-Harboring Escherichia coli

    Article • Antibiotics, October 2022, MDPI AG

    Muhammad Shafiq

  43. Distribution and antifungal susceptibility pattern ofCandidaspecies from mainland China: A systematic analysis

    Article • Virulence, September 2022, Taylor & Francis

    Muhammad Shafiq

  44. Incidence and molecular characterization of ESBL-producing and colistin-resistant Escherichia coli isolates recovered from healthy food-producing animals in Pakistan

    Article • Journal of Applied Microbiology, September 2022, Oxford University Press (OUP)

    Muhammad Shafiq

  45. Exploring antibiotic resistance genes, mobile gene elements, and virulence gene factors in an urban freshwater samples using metagenomic analysis

    Article • Environmental Science and Pollution Research, August 2022, Springer Science + Business Media

    Muhammad Shafiq

  46. Antifungal susceptibility pattern of Candida isolated from cutaneous candidiasis patients in eastern Guangdong region: A retrospective study of the past 10 years

    Article • Frontiers in Microbiology, August 2022, Frontiers

    Muhammad Shafiq

  47. Nrf2 Activation and NF-Kb & caspase/bax signaling inhibition by sodium butyrate alleviates LPS-induced cell injury in bovine mammary epithelial cells

    Article • Molecular Immunology, August 2022, Elsevier

    Muhammad Shafiq

  48. A new approach based on CXCR4-targeted combination liposomes for the treatment of liver fibrosis

    Article • Biomaterials Science, January 2022, Royal Society of Chemistry

    Muhammad Shafiq

  49. Improving Gander Reproductive Efficacy in the Context of Globally Sustainable Goose Production

    Article • Animals, December 2021, MDPI AG

    Muhammad Shafiq

  50. The Effect of Inhibin Immunization in Seminiferous Epithelium of Yangzhou Goose Ganders: A Histological Study

    Article • Animals, September 2021, MDPI AG

    Muhammad Shafiq

  51. Microbiomes and Resistomes in Biopsy Tissue and Intestinal Lavage Fluid of Colorectal Cancer

    Article • Frontiers in Cell and Developmental Biology, September 2021, Frontiers

    Muhammad Shafiq

  52. Cyclam-Modified Polyethyleneimine for Simultaneous TGFβ siRNA Delivery and CXCR4 Inhibition for the Treatment of CCl4-Induced Liver Fibrosis [Corrigendum]

    Article • International Journal of Nanomedicine, September 2021, Taylor & Francis

    Muhammad Shafiq

  53. Cyclam-Modified Polyethyleneimine for Simultaneous TGFβ siRNA Delivery and CXCR4 Inhibition for the Treatment of CCl4-Induced Liver Fibrosis

    Article • International Journal of Nanomedicine, July 2021, Taylor & Francis

    Muhammad Shafiq

  54. First Report of blaNDM-1 Bearing IncX3 Plasmid in Clinically Isolated ST11 Klebsiella pneumoniae from Pakistan

    Article • Microorganisms, April 2021, MDPI AG

    Muhammad Shafiq

  55. Epidemiological Characterization of Colistin and Carbapenem Resistant Enterobacteriaceae in a Tertiary: A Hospital from Anhui Province

    Article • Infection and Drug Resistance, April 2021, Taylor & Francis

    Muhammad Shafiq

  56. Sodium propionate protect the blood-milk barrier integrity, relieve lipopolysaccharide-induced inflammatory injury and cells apoptosis

    Article • Life Sciences, April 2021, Elsevier

    Muhammad Shafiq

  57. Horizontal Transfer of Different erm(B)-Carrying Mobile Elements Among Streptococcus suis Strains With Different Serotypes

    Article • Frontiers in Microbiology, March 2021, Frontiers

    Muhammad Shafiq

  58. Characterization and virulence factors distribution of bla CTX‐M and mcr‐1 carrying Escherichia coli isolates from bovine mastitis

    Article • Journal of Applied Microbiology, January 2021, Oxford University Press (OUP)

    Muhammad Shafiq

  59. Effect of acetate, β-hydroxybutyrate and their interaction on lipogenic gene expression, triglyceride contents and lipid droplet formation in dairy cow mammary epithelial cells

    Article • In Vitro Cellular & Developmental Biology, January 2021, Springer Science + Business Media

    Muhammad Shafiq

  60. Characterization and resistant determinants linked to mobile elements of ESBL-producing and mcr-1-positive Escherichia coli recovered from the chicken origin

    Article • Microbial Pathogenesis, January 2021, Elsevier

    Muhammad Shafiq

  61. Immunoglobulin G and Total Protein Concentration in Blood and Colostrum of Different Cattle Breeds and its Passive Transfer to Neonatal Calves

    Article • Pakistan Journal of Zoology, January 2021, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Shafiq

  62. Sequence Duplication Within pmrB Gene Contribute to High-Level Colistin Resistance in Avian Pathogenic Escherichia coli

    Article • Microbial Drug Resistance, December 2020, SAGE Publications

    Muhammad Shafiq

  63. HIGH RATE OF ESBL- PRODUCING ESCHERICHIA COLI FROM RETAIL-CHICKEN CARRYING BLACTX-M GENE ON PLASMIDS MAINLY CARRYING FREPB REPLICON

    Article • The Journal of Animal and Plant Sciences, November 2020, Pakistan Agricultural Scientists Forum

    Muhammad Shafiq

  64. A protective role of resveratrol against the effects of immobilization stress in corpora lutea of mice in early pregnancy

    Article • Journal of Integrative Agriculture, July 2020, Elsevier

    Muhammad Shafiq

  65. Article • Pakistan Journal of Pharmaceutical Sciences, July 2020, Faculty of Pharmacy and Pharmaceutical Sciences, University of Karachi

    Muhammad Shafiq

  66. Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau

    Article • Animals, January 2020, MDPI AG

    Muhammad Shafiq

  67. High Occurrence Rate of Multidrug-Resistant ESBL-Producing E. coli Recovered from Table Eggs in District Peshawar, Pakistan

    Article • Pakistan Journal of Zoology, January 2020, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Shafiq

  68. Identification, Characterization and Three-Dimensional Structure Modeling of Metallothionein-3 as a Sulfane Sulfur- and Zinc-Binding Protein

    Article • Free Radical Biology and Medicine, December 2019, Elsevier

    Muhammad Shafiq

  69. mcr-1 and blaCTX-M-15 resistance in Escherichia coli

    Article • Infection and Drug Resistance, July 2019, Dove Medical Press

    Muhammad Shafiq, Sadeeq ur Rahman

  70. Heat exposure affected the reproductive performance of pregnant mice: Enhancement of autophagy and alteration of subcellular structure in the corpus luteum

    Article • Reproductive Biology, July 2019, Elsevier

    Muhammad Shafiq

  71. Heritability estimates and genetic correlations of various production and reproductive traits of different grades of dairy cattle reared under subtropical condition

    Article • Reproduction in Domestic Animals, May 2019, Wiley

    Muhammad Shafiq