All Stories

  1. Molecular insights into the origin of the Hox-TALE patterning system

    Article • eLife, March 2014, eLife

    Dr BRUNO HUDRY, Dr Morgane Thomas-Chollier

  2. A naturally occuring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms

    Article • Proceedings of the National Academy of Sciences, October 2013, Proceedings of the National Academy of Sciences

    Dr Morgane Thomas-Chollier

  3. A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs

    Article • Nature Protocols, July 2012, Springer Science + Business Media

    Dr Morgane Thomas-Chollier, Professor Denis Thieffry

  4. RSAT peak-motifs: fast extraction of transcription factor binding motifs from full-size ChIP-seq datasets

    Article • EMBnet journal, February 2012, EMBnet Stichting

    Dr Morgane Thomas-Chollier, Professor Denis Thieffry

  5. RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

    Article • Nucleic Acids Research, December 2011, Oxford University Press (OUP)

    Dr Morgane Thomas-Chollier, Professor Denis Thieffry

  6. Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

    Article • Nature Protocols, November 2011, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  7. RSAT 2011: regulatory sequence analysis tools

    Article • Nucleic Acids Research, June 2011, Oxford University Press (OUP)

    Dr Morgane Thomas-Chollier, Professor Denis Thieffry

  8. Theoretical and empirical quality assessment of transcription factor-binding motifs

    Article • Nucleic Acids Research, October 2010, Oxford University Press (OUP)

    Dr Morgane Thomas-Chollier

  9. A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution

    Article • BMC Evolutionary Biology, January 2010, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  10. Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl

    Article • Bioinformatics, August 2009, Oxford University Press (OUP)

    Dr Morgane Thomas-Chollier

  11. Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services—an example with ChIP-chip data

    Article • Nature Protocols, September 2008, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  12. Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

    Article • Nature Protocols, September 2008, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  13. RSAT: regulatory sequence analysis tools

    Article • Nucleic Acids Research, May 2008, Oxford University Press (OUP)

    Dr Morgane Thomas-Chollier

  14. Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni: comment

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  15. HoxPred: automated classification of Hox proteins using combinations of generalised profiles

    Article • BMC Bioinformatics, July 2007, Springer Science + Business Media

    Dr Morgane Thomas-Chollier

  16. Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

    Article • BMC Evolutionary Biology, March 2007, Springer Science + Business Media

    Dr Morgane Thomas-Chollier