All Stories

  1. Genome-based reclassification of the genus Lactococcus and two novel species Pseudolactococcus yaeyamensis gen. nov., sp. nov. and Lactovum odontotermitis sp. nov. isolated from the gut of termites
  2. Faecalibacterium langellae sp. nov. isolated from human faeces
  3. Whole-genome sequencing of diverse 351 cultured prokaryotes including yet-unsequenced fastidious type strains
  4. Complete genome sequences of Sellimonas intestinalis JCM 30749 T , Sellimonas caecigallum JCM 35759 T , and ...
  5. Desulfovibrio falkowii sp. nov., Porphyromonas miyakawae sp. nov., Mediterraneibacter flintii sp. nov. and Owariibacterium komagatae gen. nov., sp. nov., isolated from human faeces
  6. Lacrimispora brassicae sp. nov. isolated from fermented cabbage, and proposal of Clostridium indicum Gundawar et al. 2019 and Clostridium methoxybenzovorans Mechichi et al. 1999 as heterotypic synonyms of Lacrimispora amygdalina (Parshina et al. 2003) ...
  7. Rhodoferax lithotrophicus sp. nov., a neutrophilic iron-oxidizing and -reducing bacterium isolated from iron-rich freshwater sediments
  8. Isolation and characterization of a novel Waltera species and reclassification of Brotolimicola acetigignens Hitch et al. 2022 as Waltera acetigignens comb. nov.
  9. Complete genome sequences of Ruminococcus torques strains JCM 36208 and JCM 36209, isolated from the feces of a healthy Japanese male
  10. Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years
  11. Claveliimonas bilis gen. nov., sp. nov., deoxycholic acid-producing bacteria isolated from human faeces, and reclassification of Sellimonas monacensis Zenner et al. 2021 as Claveliimonas monacensis comb. nov.
  12. Symbiosis of Carpenter Bees with Uncharacterized Lactic Acid Bacteria Showing NAD Auxotrophy
  13. Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022
  14. Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community
  15. Sellimonas catena sp. nov., isolated from human faeces
  16. New gene markers for classification and quantification ofFaecalibacteriumspp. in the human gut
  17. A novel species of lactic acid bacteria, Ligilactobacillus pabuli sp. nov., isolated from alfalfa silage
  18. Growth of succinate consumer Dialister hominis is supported by Bacteroides thetaiotaomicron
  19. Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
  20. Prevotella lacticifex sp. nov., isolated from the rumen of cows
  21. Lentilactobacillus fungorum sp. nov., isolated from spent mushroom substrates
  22. Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces
  23. Complete Genome Sequence of Megamonas funiformis Strain 1CBH44, Isolated from Human Feces
  24. Clostridium zeae sp. nov., isolated from corn silage
  25. Taxonomic status of the species Clostridium methoxybenzovorans Mechichi et al. 1999
  26. Lactobacillus corticis sp. nov., isolated from hardwood bark
  27. Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces
  28. Complete Genome Sequence of Longicatena caecimuris Strain 3BBH23, Isolated from Healthy Japanese Feces
  29. Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements
  30. Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus)
  31. Fecal Microbiota Perspective for Evaluation of Prebiotic Potential of Bamboo Hemicellulose Hydrolysate in Mice: A Preliminary Study
  32. Complete Genome Sequence of Alistipes indistinctus Strain 2BBH45, Isolated from the Feces of a Healthy Japanese Male
  33. Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers
  34. Stress Response of Mesosutterella multiformis Mediated by Nitrate Reduction
  35. Complete Genome Sequence of Faecalibacillus intestinalis JCM 34082, Isolated from Feces from a Healthy Japanese Female
  36. Complete Genome Sequence of Adlercreutzia sp. Strain 8CFCBH1, a Potent Producer of Equol, Isolated from Healthy Japanese Feces
  37. Microbial interaction between the succinate‐utilizing bacteriumPhascolarctobacterium faeciumand the gut commensalBacteroides thetaiotaomicron
  38. Lactococcus insecticola sp. nov. and Lactococcus hodotermopsidis sp. nov., isolated from the gut of the wood-feeding lower termite Hodotermopsis sjostedti
  39. Prevotella hominis sp. nov., isolated from human faeces
  40. Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov
  41. Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage
  42. Complete Genome Sequence of Blautia producta JCM 1471 T
  43. Complete Genome Sequence of Flavonifractor plautii JCM 32125 T
  44. Complete Genome Sequence of Collinsella aerofaciens JCM 10188 T
  45. Complete Genome Sequence of Megamonas funiformis JCM 14723 T
  46. Cutibacterium modestum sp. nov., isolated from meibum of human meibomian glands, and emended descriptions of Cutibacterium granulosum and Cutibacterium namnetense
  47. Reclassification of Clostridium diolis Biebl and Spröer 2003 as a later heterotypic synonym of Clostridium beijerinckii Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001
  48. Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male
  49. Dialister hominis sp. nov., isolated from human faeces
  50. Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.
  51. Draft Genome Sequence of Mesosutterella multiformis JCM 32464T, a Member of the Family Sutterellaceae, Isolated from Human Feces
  52. Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov.
  53. Proposal of new combination, Cutibacterium acnes subsp. elongatum comb. nov., and emended descriptions of the genus Cutibacterium, Cutibacterium acnes subsp. acnes and Cutibacterium acnes subsp. defendens
  54. Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates
  55. Bacteria and methanogen community in the rumen fed different levels of grass-legume silages
  56. Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces
  57. Isolation and Characterization of Human Gut Bacteria Capable of Extracellular Electron Transport by Electrochemical Techniques
  58. Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994
  59. Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faeces
  60. Lactococcus termiticola sp. nov., isolated from the gut of the wood-feeding higher termite Nasutitermes takasagoensis
  61. Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses
  62. Draft Genome Sequence of Faecalimonas umbilicata JCM 30896T, an Acetate-Producing Bacterium Isolated from Human Feces
  63. Draft Genome Sequence of Lawsonibacter asaccharolyticus JCM 32166T, a Butyrate-Producing Bacterium, Isolated from Human Feces
  64. Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces
  65. Lactobacillus metriopterae sp. nov., a novel lactic acid bacterium isolated from the gut of grasshopper Metrioptera engelhardti
  66. Parolsenella catena gen. nov., sp. nov., isolated from human faeces
  67. Lactococcus reticulitermitis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus
  68. Clostridium pabulibutyricum sp. nov., a butyric-acid-producing organism isolated from high-moisture grass silage
  69. Draft Genome Sequence of Lactococcus sp. Strain Rs-Y01, Isolated from the Gut of the Lower Termite Reticulitermes speratus
  70. Lactobacillus silagincola sp. nov. and Lactobacillus pentosiphilus sp. nov., isolated from silage
  71. Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. no...
  72. Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri
  73. Microbial Community Profiling Using Terminal Restriction Fragment Length Polymorphism (T-RFLP) and Denaturing Gradient Gel Electrophoresis (DGGE)
  74. Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver
  75. Paenibacillus silagei sp. nov. isolated from corn silage
  76. Bacteroides caecicola sp. nov. and Bacteroides gallinaceum sp. nov., isolated from the caecum of an Indonesian chicken
  77. Athalassotoga saccharophila gen. nov., sp. nov., isolated from an acidic terrestrial hot spring, and proposal of Mesoaciditogales ord. nov. and Mesoaciditogaceae fam. nov. in the phylum Thermotogae
  78. Filobacterium rodentium gen. nov., sp. nov., a member of Filobacteriaceae fam. nov. within the phylum Bacteroidetes; includes a microaerobic filamentous bacterium isolated from specimens from diseased rodent respiratory tracts
  79. Bacteroides caecigallinarum sp. nov., isolated from caecum of an Indonesian chicken
  80. Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov.
  81. Tannerella
  82. Prolixibacter denitrificans sp. nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolixibacter and Prolixibacter bellariivorans
  83. High quality draft genome sequence of Bacteroides barnesiae type strain BL2T (DSM 18169T) from chicken caecum
  84. Porphyromonas pasteri sp. nov., isolated from human saliva
  85. Parabacteroides faecis sp. nov., isolated from human faeces
  86. Fermentation Characteristics and Microbial Diversity of Tropical Grass-legumes Silages
  87. Distribution and Evolution of Nitrogen Fixation Genes in the Phylum Bacteroidetes
  88. Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus
  89. Innate lymphoid cells regulate intestinal epithelial cell glycosylation
  90. Methane Mitigation and Microbial Diversity of Silage Diets Containing Calliandra calothyrsus in a Rumen in Vitro Fermentation System
  91. Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas
  92. Lactobacillus furfuricola sp. nov., isolated from Nukadoko, rice bran paste for Japanese pickles
  93. Draft Genome Sequence of Lactobacillus sucicola JCM 15457T, a Motile Lactic Acid Bacterium Isolated from Oak Sap
  94. Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community
  95. Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite
  96. Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine
  97. The Family Porphyromonadaceae
  98. Diversity of Microflora in Colonic Mucus from Severe Ulcerative Colitis Patients Analyzed by Terminal Restriction Fragment Length Polymorphism and Clone Libraries of Bacterial 16S rRNA Gene Sequences
  99. Draft Genome Sequences of Porphyromonas crevioricanis JCM 15906T and Porphyromonas cansulci JCM 13913T Isolated from a Canine Oral Cavity
  100. Parabacteroides chinchillae sp. nov., isolated from chinchilla (Chincilla lanigera) faeces
  101. Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names
  102. Comprehensive microbiological findings in peri-implantitis and periodontitis
  103. Bacteroides reticulotermitis sp. nov., isolated from the gut of a subterranean termite (Reticulitermes speratus)
  104. Porphyromonas crevioricanis is an earlier heterotypic synonym of Porphyromonas cansulci and has priority
  105. Reclassification of Xylanibacter oryzae Ueki et al. 2006 as Prevotella oryzae comb. nov., with an emended description of the genus Prevotella
  106. Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters
  107. Identification and classification of the genus Bacteroides by multilocus sequence analysis
  108. Bacteroides sartorii is an earlier heterotypic synonym of Bacteroides chinchillae and has priority
  109. Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces
  110. Lactobacillus ozensis sp. nov., isolated from mountain flowers
  111. Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods
  112. Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers
  113. Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces
  114. Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis
  115. hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes
  116. Microbial Community Profiling Using Terminal Restriction Fragment Length Polymorphism (T-RFLP) and Denaturing Gradient Gel Electrophoresis (DGGE)
  117. Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library
  118. Lactobacillus florum sp. nov., a fructophilic species isolated from flowers
  119. Prevotella aurantiaca sp. nov., isolated from the human oral cavity
  120. Dynamics of fecal microbiota in hospitalized elderly fed probiotic LKM512 yogurt
  121. Lactobacillus similis sp. nov., isolated from fermented cane molasses
  122. Parabacteroides gordonii sp. nov., isolated from human blood cultures
  123. Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces
  124. Probiotic effects of orally administeredLactobacillus salivariusWB21-containing tablets on periodontopathic bacteria: a double-blinded, placebo-controlled, randomized clinical trial
  125. Diversity of Spirochetes in Endodontic Infections
  126. Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque
  127. Change of Intestinal Microbiota with Elemental Diet and Its Impact on Therapeutic Effects in a Murine Model of Chronic Colitis
  128. Distribution of Different Species of the Bacteroides fragilis Group in Individuals with Japanese Cedar Pollinosis
  129. Molecular analysis of the root canal microbiota associated with endodontic treatment failures
  130. Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella
  131. Effect of ruminal protozoa on fecal microbiota in cattle using terminal restriction fragment length polymorphism
  132. A novel keratinase from Clostridium sporogenes bv. pennavorans bv. nov., a thermotolerant organism isolated from solfataric muds
  133. Identification of bacteria from blood in febrile patients with ulcerative colitis by terminal restriction fragment length polymorphism profile analysis of 16S rRNA gene
  134. Characterization of skin microbiota in patients with atopic dermatitis and in normal subjects using 16S rRNA gene-based comprehensive analysis
  135. Influence of Bifidobacterium longum BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen season
  136. Abnormal keratin expression in circumscribed palmar hypokeratosis
  137. Prevotella pleuritidis sp. nov., isolated from pleural fluid
  138. Bacteroides coprophilus sp. nov., isolated from human faeces
  139. Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces
  140. Characterization of the Inhabitancy of Mouse Intestinal Bacteria (MIB) in Rodents and Humans by Real-Time PCR with Group-Specific Primers
  141. Bacterial reduction and persistence after endodontic treatment procedures
  142. Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum
  143. Parabacteroides johnsonii sp. nov., isolated from human faeces
  144. Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum
  145. Increase in Terminal Restriction Fragments of Bacteroidetes-Derived 16S rRNA Genes after Administration of Short-Chain Fructooligosaccharides
  146. Bacteroides dorei sp. nov., isolated from human faeces
  147. Monitoring the cell number of Lactococcus lactis subsp. cremoris FC in human feces by real-time PCR with strain-specific primers designed using the RAPD technique
  148. Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov.
  149. Clostridium glycyrrhizinilyticumSp. Nov., a Glycyrrhizin-Hydrolysing Bacterium Isolated from Human Faeces
  150. Bacteroides finegoldii sp. nov., isolated from human faeces
  151. Diversity of theClostridium coccoidesgroup in human fecal microbiota as determined by 16S rRNA gene library
  152. Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections
  153. Bacteroides intestinalis sp. nov., isolated from human faeces
  154. Characterization of the GenusBifidobacteriumby Automated Ribotyping and 16S rRNA Gene Sequences
  155. Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling
  156. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
  157. Detection and Quantification of Four Species of the GenusClostridiumin Infant Feces
  158. Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces
  159. Prevotella multisaccharivorax sp. nov., isolated from human subgingival plaque
  160. Movement and Fixation of Intestinal Microbiota after Administration of Human Feces to Germfree Mice
  161. Molecular analysis of human oral microbiota
  162. Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota
  163. Mucosa-associated bacteria in ulcerative colitis before and after antibiotic combination therapy
  164. Direct cloning of genes encoding novel xylanases from the human gut
  165. Prevotella multiformis sp. nov., isolated from human subgingival plaque
  166. Culture-independent analysis of fecal microbiota in infants, with special reference toBifidobacteriumspecies
  167. Culture-Independent Analysis of Fecal Microbiota in Cattle
  168. Effects of Two ProbioticLactobacillusStrains on Jejunal and Cecal Microbiota of Broiler Chicken under Acute Heat Stress Condition as Revealed by Molecular Analysis of 16S rRNA Genes
  169. Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes
  170. Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries
  171. Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity
  172. Comparison among Fecal Secondary Bile Acid Levels, Fecal Microbiota andClostridium scindensCell Numbers in Japanese
  173. Monitoring the cell number and viability ofLactobacillus helveticusGCL1001 in human feces by PCR methods
  174. Evaluation of Three Different Forward Primers by Terminal Restriction Fragment Length Polymorphism Analysis for Determination of FecalBifidobacteriumSpp. in Healthy Subjects
  175. Molecular Analysis of Fecal Microbiota in Elderly Individuals Using 16S rDNA Library and T-RFLP
  176. Terminal Restriction Fragment Length Polymorphism Analysis for Human Fecal Microbiota and Its Application for Analysis of Complex Bifidobacterial Communities
  177. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis
  178. Fecal Microbial Diversity in a Strict Vegetarian as Determined by Molecular Analysis and Cultivation
  179. Detection of novel oral phylotypes associated with periodontitis
  180. Unification of Bifidobacterium infantis and Bifidobacterium suis as Bifidobacterium longum
  181. Phylogenetic Analysis of the Human Gut Microbiota Using 16S rDNA Clone Libraries and Strictly Anaerobic Culture-Based Methods
  182. Phylogenetic Analysis of Cecal Microbiota in Chicken by the Use of 16S rDNA Clone Libraries
  183. Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov
  184. Bacteroides ovatus as the Predominant Commensal Intestinal Microbe Causing a Systemic Antibody Response in Inflammatory Bowel Disease
  185. Treponema socranskii, Treponema denticola,andPorphyromonas gingivalisAre Associated With Severity of Periodontal Tissue Destruction
  186. Characterization of theLactobacillus caseiGroup and theLactobacillus acidophilusGroup by Automated Ribotyping
  187. PCR Detection Method ofClostridium scindensandC. hiranonisin Human Fecal Samples
  188. Rapid Detection and Quantification of Five Periodontopathic Bacteria by Real-Time PCR
  189. Comparison of the Oral Bacterial Flora in Saliva from a Healthy Subject and Two Periodontitis Patients by Sequence Analysis of 16S rDNA Libraries
  190. Rapid identification and quantification of Collinsella aerofaciens using PCR
  191. Rapid identification and quantification ofCollinsella aerofaciensusing PCR
  192. Phylogenetic Analysis of Saccharolytic Oral Treponemes Isolated from Human Subgingival Plaque
  193. Detection ofTreponema socranskiiAssociated with Human Periodontitis by PCR
  194. Aerobic growth of some lactic acid bacteria enabled by the external addition of peroxidase (horseradish) to the culture medium
  195. Aerobic growth of and activities of NADH oxidase and NADH peroxidase in lactic acid bacteria
  196. Comparison of H2O-forming NADH oxidase from Leuconostoc mesenteroides subsp. mesenteroides NRIC 1541T and H2O2-forming NADH oxidase from Sporolactobacillus inulinus NRIC 1133T