All Stories

  1. Cophenetic Spatial Topology Embedding reveals multiscale tissue architecture in spatial omics

    Article • May 2026, openRxiv

    Dr. Taobo Hu, Professor Mats Nilsson

  2. Targeted sequencing of mutations via RNA-templated gap filling of oligonucleotides for single-cell RNA-seq

    Article • April 2026, openRxiv

    Dr. Taobo Hu, Professor Mats Nilsson

  3. A dual genetic constraint underlies the conservation of early brains in vertebrates

    Article • October 2025, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  4. Spatially resolved microRNA expression in tissues: technologies, challenges, and opportunities

    Article • Trends in Genetics, July 2025, Elsevier

    Professor Mats Nilsson

  5. A systematic implementation of padlock probing-based rolling circle amplification in an integrated microfluidic device for quantitative biomolecular analyses

    Article • Analytica Chimica Acta, May 2025, Elsevier

    Professor Mats Nilsson

  6. Spatial miRNomics: towards the integration of microRNAs in spatial biology

    Article • Nature Reviews Genetics, February 2025, Springer Science + Business Media

    Professor Mats Nilsson

  7. Oligodendroglia vulnerability in the human dorsal striatum in Parkinson’s disease

    Article • January 2025, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  8. Data from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  9. Supplementary Figure S1 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  10. Supplementary Figure S2 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  11. Supplementary Figure S3 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  12. Supplementary Figure S4 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  13. Supplementary Figure S5 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  14. Supplementary Figure S6 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  15. Supplementary Figure S7 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  16. Supplementary Figure S8 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  17. Supplementary Table S1 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  18. Supplementary Table S2 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  19. Supplementary Table S3 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  20. Supplementary Table S4 from Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by <i>In Situ</i> Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • October 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  21. Spatial Transcriptome Mapping of the Desmoplastic Growth Pattern of Colorectal Liver Metastases by In Situ Sequencing Reveals a Biologically Relevant Zonation of the Desmoplastic Rim

    Article • Clinical Cancer Research, July 2024, American Association for Cancer Research (AACR)

    Professor Mats Nilsson

  22. Interneuron diversity in the human dorsal striatum

    Article • Nature Communications, July 2024, Springer Science + Business Media

    Professor Mats Nilsson

  23. Spatial multimodal analysis of transcriptomes and metabolomes in tissues

    Article • Nature Biotechnology, September 2023, Springer Science + Business Media

    Professor Mats Nilsson

  24. Tactile Tourism

    Article • Tourism, July 2023, Institute for Tourism

    Professor Mats Nilsson

  25. Spatial Multimodal Analysis of Transcriptomes and Metabolomes in Tissues

    Article • January 2023, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  26. De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks

    Article • PLoS Computational Biology, August 2022, PLOS

    Professor Mats Nilsson

  27. Rolling Circle Amplification in Integrated Microsystems: An Uncut Gem toward Massively Multiplexed Pathogen Diagnostics and Genotyping

    Article • Accounts of Chemical Research, October 2021, American Chemical Society (ACS)

    Professor Mats Nilsson

  28. Comprehensive in situ mapping of human cortical transcriptomic cell types

    Article • Communications Biology, August 2021, Springer Science + Business Media

    Professor Mats Nilsson

  29. Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps

    Article • BMC Bioinformatics, July 2021, Springer Science + Business Media

    Professor Mats Nilsson

  30. Correction to ‘Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue’

    Article • Nucleic Acids Research, July 2021, Oxford University Press (OUP)

    Professor Mats Nilsson

  31. Developmental landscape of human forebrain at a single-cell level unveils early waves of oligodendrogenesis

    Article • July 2021, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  32. De novo spatiotemporal modelling of cell-type signatures identifies novel cell populations in the developmental human heart

    Article • July 2021, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  33. Comprehensive in situ mapping of human cortical transcriptomic cell types

    Article • January 2021, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  34. Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue

    Article • Nucleic Acids Research, September 2020, Oxford University Press (OUP)

    Professor Mats Nilsson

  35. Molecular architecture of the developing mouse brain

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  36. Real‐time analysis of switchable nanocomposites of magnesium pyrophosphates and rolling circle amplification products

    Article • ChemNanoMat, April 2020, Wiley

    Professor Mats Nilsson

  37. SCRINSHOT, a spatial method for single-cell resolution mapping of cell states in tissue sections

    Article • February 2020, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  38. Probabilistic cell typing enables fine mapping of closely related cell types in situ

    Article • Nature Chemical Biology, November 2019, Springer Science + Business Media

    Professor Mats Nilsson

  39. Identification of spatial compartments in tissue from in situ sequencing data

    Article • September 2019, Cold Spring Harbor Laboratory Press

    Professor Mats Nilsson

  40. Padlock Probe Assay for Detection and Subtyping of Seasonal Influenza

    Article • Clinical Chemistry, September 2018, AACC

    Professor Mats Nilsson

  41. Smartphone-based clinical diagnostics: towards democratization of evidence-based health care

    Article • Journal of Internal Medicine, September 2018, Wiley

    Professor Mats Nilsson

  42. Overcoming diagnostic issues in precision treatment of pancreatic cancer

    Article • Expert Review of Precision Medicine and Drug Development, May 2018, Taylor & Francis

    Professor Mats Nilsson

  43. In Situ Detection and Quantification of AR-V7, AR-FL, PSA, andKRASPoint Mutations in Circulating Tumor Cells

    Article • Clinical Chemistry, January 2018, AACC

    Professor Mats Nilsson

  44. Simultaneous Single-Cell In Situ Analysis of Human Adenovirus Type 5 DNA and mRNA Expression Patterns in Lytic and Persistent Infection

    Article • Journal of Virology, March 2017, ASM Journals

    Professor Mats Nilsson, Tanel Punga

  45. In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification

    Article • November 2016, Springer Science + Business Media

    Professor Mats Nilsson

  46. Multiplexed protein profiling by sequential affinity capture

    Article • PROTEOMICS, March 2016, Wiley

    PETER NILSSON, Professor Mats Nilsson

  47. Rolling Circle Amplification with Padlock Probes for In Situ Detection of RNA Analytes

    Article • January 2016, Springer Science + Business Media

    Professor Mats Nilsson

  48. A General Method for Rapid Determination of Antibiotic Susceptibility and Species in Bacterial Infections

    Article • Journal of Clinical Microbiology, November 2014, ASM Journals

    Professor Mats Nilsson

  49. Circle-to-circle amplification on a digital microfluidic chip for amplified single molecule detection

    Article • Lab on a Chip, January 2014, Royal Society of Chemistry

    Professor Mats Nilsson

  50. Molecular tools for companion diagnostics

    Article • New Biotechnology, September 2012, Elsevier

    Professor Mats Nilsson

  51. Point of care mutation detection

    Article • Human Mutation, February 2010, Wiley

    Professor Mats Nilsson

  52. Mosaic mutation detection: finding the rare ones

    Article • Human Mutation, June 2009, Wiley

    Professor Mats Nilsson

  53. Ligase-mediated Gene Detection

    Article • September 2006, Wiley

    Professor Mats Nilsson

  54. PCR-generated padlock probes distinguish homologous chromosomes through quantitative fluorescence analysis

    Article • European Journal of Human Genetics, May 2003, Springer Science + Business Media

    Professor Mats Nilsson

  55. Single‐Nucleotide Sequence Discrimination In Situ Using Padlock Probes

    Article • Current Protocols in Human Genetics, July 2002, Wiley

    Professor Mats Nilsson

  56. Multiplex analysis of nucleic acid sequences by amplification of padlock probes on DNA arrays

    Article • Nature Genetics, November 1999, Springer Science + Business Media

    Professor Mats Nilsson

  57. Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21

    Article • Nature Genetics, July 1997, Springer Science + Business Media

    Professor Mats Nilsson

  58. Padlock probes: circularizing oligonucleotides for localized DNA detection

    Article • Science, September 1994, American Association for the Advancement of Science

    Professor Mats Nilsson

  59. Oligonucleotide Ligation Assay

    Article • Springer Science + Business Media

    Professor Mats Nilsson