All Stories

  1. A more decentralized vision for Linked Data

    Article • Semantic Web – Interoperability Usability Applicability, January 2020, IOS Press

    Maulik Kamdar, Mark Musen, Javier Fernandez

  2. WebProtégé: A Cloud-Based Ontology Editor

    Article • May 2019, ACM (Association for Computing Machinery)

    Mark Musen

  3. HopRank: How Semantic Structure Influences Teleportation in PageRank (A Case Study on BioPortal)

    Article • May 2019, ACM (Association for Computing Machinery)

    Mark Musen

  4. CEDAR

    Article • January 2018, ACM (Association for Computing Machinery)

    Mark Musen

  5. A systematic analysis of term reuse and term overlap across biomedical ontologies

    Article • Semantic Web – Interoperability Usability Applicability, August 2017, IOS Press

    Maulik Kamdar, Mark Musen

  6. An ontology-driven tool for structured data acquisition using Web forms

    Article • Journal of Biomedical Semantics, August 2017, Springer Science + Business Media

    Mark Musen

  7. PhLeGrA

    Article • April 2017, ACM (Association for Computing Machinery)

    Mark Musen, Maulik Kamdar

  8. How Users Explore Ontologies on the Web

    Article • April 2017, ACM (Association for Computing Machinery)

    Mark Musen

  9. Snap-SPARQL: A Java Framework for Working with SPARQL and OWL

    Article • January 2016, Springer Science + Business Media

    Mark Musen

  10. Ten years of Applied Ontology

    Article • Applied Ontology, December 2015, IOS Press

    Mark Musen

  11. Using aggregate taxonomies to summarize SNOMED CT evolution

    Article • November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Musen

  12. The protégé project

    Article • AI Matters, June 2015, ACM (Association for Computing Machinery)

    Mark Musen

  13. Applied ontology: The next decade begins

    Article • Applied Ontology, May 2015, IOS Press

    Mark Musen

  14. Data Breaches of Protected Health Information in the United States

    Article • JAMA, April 2015, American Medical Association (AMA)

    Mark Musen

  15. Helping Users Bootstrap Ontologies

    Article • January 2015, ACM (Association for Computing Machinery)

    Mark Musen

  16. User Extensible System to Identify Problems in OWL Ontologies and SWRL Rules

    Article • January 2015, Springer Science + Business Media

    Mark Musen

  17. Cross-domain targeted ontology subsets for annotation: The case of SNOMED CORE and RxNorm

    Article • Journal of Biomedical Informatics, February 2014, Elsevier

    Mark Musen

  18. Knowledge Representation

    Article • January 2014, Elsevier

    Mark Musen

  19. A Study on the Atomic Decomposition of Ontologies

    Article • January 2014, Springer Science + Business Media

    Mark Musen

  20. Investigating Collaboration Dynamics in Different Ontology Development Environments

    Article • January 2014, Springer Science + Business Media

    Mark Musen

  21. Clinical Decision-Support Systems

    Article • November 2013, Springer Science + Business Media

    Mark Musen

  22. Mechanical turk as an ontology engineer?

    Article • May 2013, ACM (Association for Computing Machinery)

    Mark Musen

  23. The knowledge acquisition workshops: A remarkable convergence of ideas

    Article • International Journal of Human-Computer Studies, February 2013, Elsevier

    Mark Musen

  24. Upper Level Ontology

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  25. National Center for Biomedical Ontology

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  26. International Classification of Diseases

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  27. BioPortal

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  28. RDFS

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  29. National Cancer Institute Thesaurus

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  30. Foundational Model of Anatomy

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  31. Frame Language

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  32. Semantic Web

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  33. Web Ontology Language (OWL)

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  34. Protégé Ontology Editor

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  35. Using Semantic Web in ICD-11: Three Years Down the Road

    Article • January 2013, Springer Science + Business Media

    Mark Musen

  36. Chapter 9: Analyses Using Disease Ontologies

    Article • PLoS Computational Biology, December 2012, PLOS

    Mark Musen

  37. Proposed SKOS Extensions for BioPortal Terminology Services

    Article • January 2012, Springer Science + Business Media

    Mark Musen

  38. Collaborative Development of Large-Scale Biomedical Ontologies

    Article • May 2011, Wiley

    Mark Musen

  39. Semantic infrastructure to enable collaboration in ontology development

    Article • May 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Musen

  40. NIST workshop on ontology evaluation

    Article • January 2011, National Institute of Standards and Technology (NIST)

    Mark Musen

  41. From mappings to modules

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Musen

  42. How orthogonal are the OBO Foundry ontologies?

    Article • Journal of Biomedical Semantics, January 2011, Springer Science + Business Media

    Mark Musen

  43. A knowledge base driven user interface for collaborative ontology development

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Musen

  44. SWRL-F

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Musen

  45. DataStorm An Ontology-Driven Framework for Cloud-Based Data Analytic Systems

    Article • July 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Musen

  46. An efficient approach to intelligent real-time monitoring using ontologies and Hadoop

    Article • June 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Musen

  47. A Typology for Modeling Processes in Clinical Guidelines and Protocols

    Article • January 2010, Springer Science + Business Media

    Mark Musen

  48. Building a biomedical ontology recommender web service

    Article • Journal of Biomedical Semantics, January 2010, Springer Science + Business Media

    Mark Musen

  49. Mapping Master: A Flexible Approach for Mapping Spreadsheets to OWL

    Article • January 2010, Springer Science + Business Media

    Mark Musen

  50. Development of Large-Scale Functional Brain Networks in Children

    Article • PLoS Biology, July 2009, PLOS

    Mark Musen

  51. Ontologies for Formal Representation of Biological Systems

    Article • January 2009, Springer Science + Business Media

    Mark Musen

  52. Traversing Ontologies to Extract Views

    Article • January 2009, Springer Science + Business Media

    Mark Musen

  53. Un service Web pour l’annotation sémantique de données biomédicales avec des ontologies

    Article • January 2009, Springer Science + Business Media

    Mark Musen

  54. An Ontology-Driven Framework for Deploying JADE Agent Systems

    Article • December 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Musen

  55. Collecting Community-Based Mappings in an Ontology Repository

    Article • January 2008, Springer Science + Business Media

    Mark Musen

  56. Protégé: A Tool for Managing and Using Terminology in Radiology Applications

    Article • Journal of Digital Imaging, August 2007, Springer Science + Business Media

    Mark Musen

  57. Using semantic dependencies for consistency management of an ontology of brain–cortex anatomy

    Article • Artificial Intelligence in Medicine, March 2007, Elsevier

    Mark Musen

  58. Searching ontologies based on content

    Article • January 2007, ACM (Association for Computing Machinery)

    Mark Musen

  59. Annotation and query of tissue microarray data using the NCI Thesaurus

    Article • BMC Bioinformatics, January 2007, Springer Science + Business Media

    Mark Musen

  60. DON'T KNOW MUCH ABOUT PHILOSOPHY: THE CONFUSION OVER BIO-ONTOLOGIES

    Article • July 2006, World Scientific Pub Co Pte Lt

    Mark Musen

  61. Clinical Decision-Support Systems

    Article • January 2006, Springer Science + Business Media

    Mark Musen

  62. Wrestling with SUMO and bio-ontologies

    Article • Nature Biotechnology, January 2006, Nature

    Mark Musen

  63. DON'T KNOW MUCH ABOUT PHILOSOPHY: THE CONFUSION OVER BIO-ONTOLOGIES

    Article • January 2006, World Scientific Pub Co Pte Lt

    Mark Musen

  64. DON'T KNOW MUCH ABOUT PHILOSOPHY: THE CONFUSION OVER BIO-ONTOLOGIES

    Article • January 2006, World Scientific Pub Co Pte Lt

    Mark Musen

  65. Evaluating Detection of an Inhalational Anthrax Outbreak

    Article • January 2006, Centers for Disease Control and Prevention (CDC)

    Mark Musen

  66. Onto-Agents-Enabling Intelligent Agents on the Web

    Article • May 2005, Defense Technical Information Center (DTIC)

    Mark Musen

  67. Protégé: Community is Everything

    Article • International Journal of Human-Computer Studies, May 2005, Elsevier

    Mark Musen

  68. EZPAL: Environment for composing constraint axioms by instantiating templates

    Article • International Journal of Human-Computer Studies, May 2005, Elsevier

    Mark Musen

  69. The Semantic Web – ISWC 2005

    Article • January 2005, Springer Science + Business Media

    Mark Musen

  70. Real-Time Population Health Detector

    Article • November 2004, Defense Technical Information Center (DTIC)

    Mark Musen

  71. Pushing the envelope: challenges in a frame-based representation of human anatomy

    Article • Data & Knowledge Engineering, March 2004, Elsevier

    Mark Musen

  72. Ontologies in Support of Problem Solving

    Article • January 2004, Springer Science + Business Media

    Mark Musen

  73. Tracking Changes During Ontology Evolution

    Article • January 2004, Springer Science + Business Media

    Mark Musen

  74. A knowledge-based method for surveillance

    Article • Journal of Urban Health, March 2003, Springer Science + Business Media

    Mark Musen

  75. Intelligent Information Processing

    Article • January 2002, Springer Science + Business Media

    Mark Musen

  76. Configuring Online Problem-Solving Resources with the Internet Reasoning Service

    Article • January 2002, Springer Science + Business Media

    Mark Musen

  77. A Template-Based Approach Toward Acquisition of Logical Sentences

    Article • January 2002, Springer Science + Business Media

    Mark Musen

  78. Jambalaya

    Article • January 2002, ACM (Association for Computing Machinery)

    Mark Musen

  79. SHriMP views

    Article • January 2002, ACM (Association for Computing Machinery)

    Mark Musen

  80. SHriMP views

    Article • January 2002, ACM (Association for Computing Machinery)

    Mark Musen

  81. Jambalaya

    Article • January 2002, ACM (Association for Computing Machinery)

    Mark Musen

  82. Mappings for Reuse in Knowledge-based Systems

    Article • January 2001, Springer Science + Business Media

    Mark Musen

  83. Clinical Decision-Support Systems

    Article • January 2001, Springer Science + Business Media

    Mark Musen

  84. A Case Study in Using Protégé-2000 as a Tool for CommonKADS

    Article • January 2000, Springer Science + Business Media

    Mark Musen

  85. Representation of change in controlled medical terminologies

    Article • Artificial Intelligence in Medicine, January 1999, Elsevier

    Mark Musen

  86. Reuse, CORBA, and knowledge-based systems

    Article • International Journal of Human-Computer Studies, October 1998, Elsevier

    Mark Musen

  87. Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction

    Article • Connection Science, March 1997, Taylor & Francis

    Mark Musen

  88. Task modeling with reusable problem-solving methods

    Article • Artificial Intelligence, December 1995, Elsevier

    Mark Musen

  89. Reuse with PROTÉGÉ-II

    Article • ACM SIGSOFT Software Engineering Notes, August 1995, ACM (Association for Computing Machinery)

    Mark Musen

  90. Learning rare categories in backpropagation

    Article • January 1995, Springer Science + Business Media

    Mark Musen

  91. Reuse with PROTÉGÉ-II

    Article • January 1995, ACM (Association for Computing Machinery)

    Mark Musen

  92. Generation of knowledge-acquisition tools from domain ontologies

    Article • International Journal of Human-Computer Studies, September 1994, Elsevier

    Mark Musen

  93. A computer-based approach to quality improvement for telephone triage in a community AIDS clinic

    Article • Nursing Administration Quarterly, January 1994, Wolters Kluwer Health

    Mark Musen

  94. A computer-based approach to quality improvement for telephone triage in a community AIDS clinic

    Article • Nursing Administration Quarterly, January 1994, Wolters Kluwer Health

    Mark Musen

  95. A computer-based approach to quality improvement for telephone triage in a community AIDS clinic

    Article • Nursing Administration Quarterly, January 1994, Wolters Kluwer Health

    Mark Musen

  96. RÉSUMÉ: A Temporal-Abstraction System for Patient Monitoring

    Article • Computers and Biomedical Research, June 1993, Elsevier

    Mark Musen

  97. There's no theory better than that of a practical tool

    Article • The Knowledge Engineering Review, March 1993, Cambridge University Press

    Mark Musen

  98. Conceptual models for automatic generation of knowledge-acquisition tools

    Article • The Knowledge Engineering Review, March 1993, Cambridge University Press

    Mark Musen

  99. An Overview of Knowledge Acquisition

    Article • January 1993, Springer Science + Business Media

    Mark Musen

  100. Graph-Grammar Assistance for Automated Generation of Influence Diagrams

    Article • January 1993, Elsevier

    Mark Musen

  101. Modeling tasks with mechanisms

    Article • International Journal of Intelligent Systems, January 1993, Wiley

    Mark Musen

  102. Dimensions of knowledge sharing and reuse

    Article • Computers and Biomedical Research, October 1992, Elsevier

    Mark Musen

  103. A problem-solving model for episodic skeletal-plan refinement

    Article • Knowledge Acquisition, June 1992, Elsevier

    Mark Musen

  104. Overcoming the limitations of role-limiting methods

    Article • Knowledge Acquisition, June 1992, Elsevier

    Mark Musen

  105. Knowledge acquisition for temporal-abstraction mechanisms

    Article • Knowledge Acquisition, June 1992, Elsevier

    Mark Musen

  106. A multiple-method knowledge-acquisition shell for the automatic generation of knowledge-acquisition tools

    Article • Knowledge Acquisition, June 1992, Elsevier

    Mark Musen

  107. Use of KADS to create a conceptual model of the ONCOCIN task

    Article • Knowledge Acquisition, March 1992, Elsevier

    Mark Musen

  108. Conceptual models for automatic generation of knowledge-acquisition tools

    Article • January 1992, Springer Science + Business Media

    Mark Musen

  109. A model for critiquing based on automated medical records

    Article • Computers and Biomedical Research, August 1991, Elsevier

    Mark Musen

  110. The 1990 AAAI Spring Symposium on Artificial Intelligence in Medicine

    Article • Artificial Intelligence in Medicine, November 1990, Elsevier

    Mark Musen

  111. Generation of Visual Languages for Development of Knowledge-Based Systems

    Article • January 1990, Springer Science + Business Media

    Mark Musen

  112. Episodic skeletal-plan refinement based on temporal data

    Article • Communications of the ACM, December 1989, ACM (Association for Computing Machinery)

    Mark Musen

  113. Automated support for building and extending expert models

    Article • Machine Learning, December 1989, Springer Science + Business Media

    Mark Musen

  114. An editor for the conceptual models of interactive knowledge-acquisition tools

    Article • International Journal of Man-Machine Studies, December 1989, Elsevier

    Mark Musen

  115. Knowledge acquisition at the metalevel: creation of custom-tailored knowledge-acquisition tools

    Article • ACM SIGART Bulletin, April 1989, ACM (Association for Computing Machinery)

    Mark Musen

  116. Conceptual models of interactive knowledge acquisition tools

    Article • Knowledge Acquisition, March 1989, Elsevier

    Mark Musen

  117. Automated Support for Building and Extending Expert Models

    Article • January 1989, Springer Science + Business Media

    Mark Musen

  118. OPAL: Toward the Computer-Aided Design of Oncology Advice Systems

    Article • January 1988, Springer Science + Business Media

    Mark Musen

  119. Document-Oriented Views of Guideline Knowledge Bases

    Article • Springer Science + Business Media

    Mark Musen

  120. CDS needs NLP - Because we need to be looking not just where the light is

    Article • American Psychological Association (APA)

    Mark Musen

  121. Technology for Building Intelligent Systems:

    Article • JSTOR

    Mark Musen

  122. Using the Semantic Web Rule Language in the Development of Ontology-Driven Applications

    Article • IGI Global

    Mark Musen

  123. Querying the Semantic Web with SWRL

    Article • Springer Science + Business Media

    Mark Musen

  124. Efficiently Querying Relational Databases Using OWL and SWRL

    Article • Springer Science + Business Media

    Mark Musen

  125. Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data

    Article • Springer Science + Business Media

    Mark Musen