All Stories

  1. What is missing in autonomous discovery: open challenges for the community

    Article • Digital Discovery, January 2023, Royal Society of Chemistry

    Dr Stuart I Campbell, Mark Hereld

  2. Towards a modular architecture for science factories

    Article • Digital Discovery, January 2023, Royal Society of Chemistry

    Mark Hereld

  3. LightningBug ONE: An experiment in high-throughput digitization of pinned insects

    Article • Biodiversity Information Science and Standards, June 2019, Pensoft Publishers

    Mark Hereld

  4. An Interior Point Method for Nonnegative Sparse Signal Reconstruction

    Article • October 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  5. Bayesian Approach for Automatic Joint Parameter Estimation in 3D Image Reconstruction from Multi-Focus Microscope

    Article • October 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  6. Towards Automated Transcription of Label Text from Pinned Insect Collections

    Article • March 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  7. Designing a High-Throughput Pipeline for Digitizing Pinned Insects

    Article • October 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  8. A Graph-Based Computational Framework for Simulation and Optimization of Coupled Infrastructure Networks

    Article • IET Generation Transmission & Distribution, April 2017, the Institution of Engineering and Technology (the IET)

    Mark Hereld, Kibaek Kim

  9. Parallel distributed, GPU-accelerated, advanced lighting calculations for large-scale volume visualization

    Article • October 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  10. Coupling LAMMPS and the vl3 Framework for Co-Visualization of Atomistic Simulations

    Article • May 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  11. Optimal scheduling of in-situ analysis for large-scale scientific simulations

    Article • November 2015, ACM (Association for Computing Machinery)

    Mark Hereld

  12. Large-scale co-visualization for LAMMPS using vl3

    Article • October 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  13. Streaming ultra high resolution images to large tiled display at nearly interactive frame rate with vl3

    Article • October 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  14. Efficient parallel volume rendering of large-scale adaptive mesh refinement data

    Article • October 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  15. Visualizing Large, Heterogeneous Data in Hybrid-Reality Environments

    Article • IEEE Computer Graphics and Applications, July 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  16. Proactive Support for Large-Scale Data Exploration

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  17. Large-Scale Modeling of Epileptic Seizures: Scaling Properties of Two Parallel Neuronal Network Simulation Algorithms

    Article • Computational and Mathematical Methods in Medicine, January 2013, Hindawi Publishing Corporation

    Mark Hereld

  18. UNCERTAINTY CLASSIFICATION AND VISUALIZATION OF MOLECULAR INTERFACES

    Article • International Journal for Uncertainty Quantification, January 2013, Begell House

    Mark Hereld

  19. Abstract: Bringing Task and Data Parallelism to Analysis of Climate Model Output

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  20. UltraVis 2012: 2012 Workshop on Ultrascale Visualization

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  21. Direct Numerical Simulations of Cosmological Reionization: Field Comparison: Density

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  22. Direct Numerical Simulations of Cosmological Reionization: Field Comparison: Ionization Fraction

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  23. Poster: Bringing Task and Data Parallelism to Analysis of Climate Model Output

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  24. Exploring large data over wide area networks

    Article • October 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  25. Toward simulation-time data analysis and I/O acceleration on leadership-class systems

    Article • October 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  26. Examples ofin transitvisualization

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  27. Interactive large data exploration over the wide area

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  28. Modeling early galaxies using radiation hydrodynamics

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  29. Topology-aware data movement and staging for I/O acceleration on Blue Gene/P supercomputing systems

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  30. Electronic poster

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  31. A solution looking for lots of problems

    Article • January 2011, ACM (Association for Computing Machinery)

    Mark Hereld

  32. Systematic Comparison of the Behaviors Produced by Computational Models of Epileptic Neocortex

    Article • Journal of Clinical Neurophysiology, December 2010, Wolters Kluwer Health

    Mark Hereld

  33. Accelerating I/O Forwarding in IBM Blue Gene/P Systems

    Article • November 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  34. Towards parallel access of multi-dimensional, multi-resolution scientific data

    Article • November 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  35. A Web 2.0-Based Scientific Application Framework

    Article • July 2010, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  36. Oscillation in a network model of neocortex

    Article • Neurocomputing, March 2010, Elsevier

    Mark Hereld

  37. Accelerating science gateway development with Web 2.0 and Swift

    Article • January 2010, ACM (Association for Computing Machinery)

    Mark Hereld

  38. Enabling scientific teamwork

    Article • Journal of Physics Conference Series, July 2009, Institute of Physics Publishing

    Mark Hereld

  39. Structured hints : extracting and abstracting domain expertise.

    Article • March 2009, Office of Scientific and Technical Information (OSTI)

    Mark Hereld

  40. Modeling resource-coupled computations

    Article • January 2009, ACM (Association for Computing Machinery)

    Mark Hereld

  41. Streaming visualization for collaborative environments

    Article • Journal of Physics Conference Series, July 2008, Institute of Physics Publishing

    Mark Hereld

  42. Collaboration as a second thought

    Article • May 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  43. The data analysis computing hierarchy

    Article • January 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  44. Image-based configuration and interaction for large neural network simulations

    Article • BMC Neuroscience, July 2007, Springer Science + Business Media

    Mark Hereld

  45. Framework for Interactive Million-Neuron Simulation

    Article • Journal of Clinical Neurophysiology, April 2007, Wolters Kluwer Health

    Mark Hereld

  46. Propagation of Seizure-like Activity in a Model of Neocortex

    Article • Journal of Clinical Neurophysiology, April 2007, Wolters Kluwer Health

    Mark Hereld

  47. ParalleX: A Study of A New Parallel Computation Model

    Article • January 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  48. Role of Persistent Sodium Current in Bursting Activity of Mouse Neocortical Networks In Vitro

    Article • Journal of Neurophysiology, November 2006, American Physiological Society

    Mark Hereld

  49. Hierarchical multithreading: programming model and system software

    Article • January 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  50. Emergent Epileptiform Activity in Neural Networks With Weak Excitatory Synapses

    Article • IEEE Transactions on Neural Systems and Rehabilitation Engineering, June 2005, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  51. Simulation of neocortical epileptiform activity using parallel computing

    Article • Neurocomputing, June 2004, Elsevier

    Mark Hereld

  52. DottyToto: a measurement engine for aligning multiprojector display systems

    Article • March 2003, SPIE

    Mark Hereld

  53. Next generation system software for future high-end computing systems

    Article • January 2002, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  54. Introduction to building projection-based tiled display systems

    Article • IEEE Computer Graphics and Applications, July 2000, Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  55. The star formation histories of low surface brightness galaxies

    Article • Monthly Notices of the Royal Astronomical Society, March 2000, Oxford University Press (OUP)

    Mark Hereld

  56. ActiveSpaces on the Grid: The Construction of Advanced Visualization and Interaction Environments

    Article • January 2000, Springer Science + Business Media

    Mark Hereld

  57. The stellar populations of low surface brightness galaxies

    Article • Monthly Notices of the Royal Astronomical Society, February 1999, Oxford University Press (OUP)

    Mark Hereld

  58. Near‐Infrared Halo Emission in the Edge‐on Spiral Galaxy ESO 240‐G11

    Article • The Astrophysical Journal, October 1998, Institute of Physics Publishing

    Mark Hereld

  59. The South Pole Near Infrared Sky Brightness

    Article • Publications of the Astronomical Society of the Pacific, August 1996, Institute of Physics Publishing

    Mark Hereld

  60. The optical and near-infrared colors of galaxies, 1: The photometric data

    Article • The Astronomical Journal, September 1994, Institute of Physics Publishing

    Mark Hereld

  61. Near Infrared Imaging of Cooling Flow Galaxies

    Article • January 1994, Springer Science + Business Media

    Mark Hereld

  62. Near Infrared Images of a Select Sample of Young Stellar Objects in Taurus

    Article • January 1994, Springer Science + Business Media

    Mark Hereld

  63. Molecular Hydrogen in IRAS03282+3035

    Article • January 1994, Springer Science + Business Media

    Mark Hereld

  64. SPIREX — Near Infrared Astronomy from the South Pole

    Article • January 1994, Springer Science + Business Media

    Mark Hereld

  65. SPIREX-near infrared astronomy from the South Pole

    Article • Experimental Astronomy, January 1994, Springer Science + Business Media

    Mark Hereld

  66. Molecular Hydrogen in the IRAS 03282+3035 Stellar Jet

    Article • The Astrophysical Journal, December 1993, Institute of Physics Publishing

    Mark Hereld

  67. Subarcsecond near-infrared imaging of ultraluminous IRAS galaxies

    Article • The Astrophysical Journal, January 1993, Institute of Physics Publishing

    Mark Hereld

  68. Multifrequency observations of BL Lacertae in 1988

    Article • The Astrophysical Journal, December 1991, Institute of Physics Publishing

    Mark Hereld

  69. HH 5, HH 6, and their exciting stars

    Article • The Astrophysical Journal, April 1991, Institute of Physics Publishing

    Mark Hereld

  70. A subdued interpretation of the visual and infrared emission from merging galaxies - Application to NGC 6240

    Article • The Astrophysical Journal, December 1990, Institute of Physics Publishing

    Mark Hereld

  71. GRIM: a near-infrared grism spectrometer and imager

    Article • July 1990, SPIE

    Mark Hereld

  72. pNIC: a near-infrared camera for testing focal plane arrays

    Article • July 1990, SPIE

    Mark Hereld

  73. Near-infrared image of NGC 1068 - Bar-driven star formation and the circumnuclear composition

    Article • The Astrophysical Journal, August 1989, Institute of Physics Publishing

    Mark Hereld

  74. G70.7+1.2: A nonthermal bubble in a globule - Nova, supernova remnant, or outflow?

    Article • The Astrophysical Journal, March 1989, Institute of Physics Publishing

    Mark Hereld

  75. HgCdTe Focal Plane Arrays For Low Background Astronomical Applications

    Article • October 1986, SPIE

    Mark Hereld

  76. Beat Frequency Locking In Passive Ring Laser Gyroscopes

    Article • October 1984, SPIE

    Mark Hereld

  77. Gravitational Wave Detectors Using Laser Interferometers and Optical Cavities: Ideas, Principles and Prospects

    Article • January 1983, Springer Science + Business Media

    Mark Hereld

  78. Gravitational Wave Detectors Using Laser Interferometers and Optical Cavities: Some Practical Aspects and Results

    Article • January 1983, Springer Science + Business Media

    Mark Hereld

  79. Optical Cavity Laser Interferometers for Gravitational Wave Detection

    Article • January 1981, Springer Science + Business Media

    Mark Hereld

  80. CupHolder: A Multi-Person Interactive High-Resolution Workstation

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  81. Pixel-Aligned Warping for Multiprojector Tiled Displays

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld

  82. Prophesy: an infrastructure for analyzing and modeling the performance of parallel and distributed applications

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Mark Hereld