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  1. Eleven quick tips for writing a Bioconductor package

    Article • PLoS Computational Biology, March 2025, PLOS

    Dr Kevin Christophe Rue-Albrecht

  2. Eleven quick tips for writing a Bioconductor package

    Article • October 2024, Center for Open Science

    Dr Kevin Christophe Rue-Albrecht

  3. Author Correction: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture

    Article • Nature Protocols, June 2023, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  4. Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture

    Article • Nature Protocols, February 2022, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  5. IL-1-driven stromal–neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies

    Article • Nature Reports Stem Cells, October 2021, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  6. Publisher Correction: Orchestrating single-cell analysis with Bioconductor

    Article • Nature Chemical Biology, December 2019, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  7. Orchestrating single-cell analysis with Bioconductor

    Article • Nature Chemical Biology, December 2019, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  8. Orchestrating Single-Cell Analysis with Bioconductor

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Dr Kevin Christophe Rue-Albrecht

  9. Impact of bacterial infection (Mycobacterium bovis) on host DNA modifications

    Article • Scientific Reports, February 2019, Springer Science + Business Media

    Dr Alan M O'Doherty, Dr Kevin Christophe Rue-Albrecht

  10. The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

    Article • Immunity, February 2019, Elsevier

    Dr Kevin Christophe Rue-Albrecht

  11. Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets

    Article • Nature Communications, November 2018, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  12. A reactive web-application to interactively explore genomics data sets

    Article • F1000Research, June 2018, Faculty of 1000, Ltd.

    Dr Kevin Christophe Rue-Albrecht

  13. RNA sequencing (RNA-seq) reveals extremely low levels of reticulocyte-derived globin gene transcripts in peripheral blood from horses (Equus caballus) and cattle (Bos taurus)

    Article • April 2018, Cold Spring Harbor Laboratory Press

    Dr Kevin Christophe Rue-Albrecht

  14. Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle

    Article • Scientific Reports, January 2018, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  15. The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

    Article • December 2017, Cold Spring Harbor Laboratory Press

    Dr Kevin Christophe Rue-Albrecht

  16. Comparative ’omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

    Article • November 2017, Cold Spring Harbor Laboratory Press

    Dr Kevin Christophe Rue-Albrecht

  17. Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis

    Article • Microbial Genomics, August 2016, Society for General Microbiology

    Dr Kevin Christophe Rue-Albrecht

  18. Facilitate rapid identification of gene sets that collectively best classify sets of samples

    Article • BMC Bioinformatics, March 2016, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  19. High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

    Article • BMC Genomics, December 2015, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  20. Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

    Article • October 2015, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  21. RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli

    Article • Scientific Reports, September 2015, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  22. Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus

    Article • Frontiers in Immunology, November 2014, Frontiers

    Dr Kevin Christophe Rue-Albrecht

  23. RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

    Article • Frontiers in Immunology, August 2014, Frontiers

    Dr Karsten Hokamp, Dr Kevin Christophe Rue-Albrecht

  24. Organizing a PhD symposium—an inside view

    Article • EMBO Reports, September 2013, Wiley

    Dr Kevin Christophe Rue-Albrecht

  25. Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

    Article • BMC Genomics, January 2013, Springer Science + Business Media

    Dr Kevin Christophe Rue-Albrecht

  26. Correlation of disorder between S. cerevisiae interacting proteins

    Article • Molecular BioSystems, January 2012, Royal Society of Chemistry

    Dr Kevin Christophe Rue-Albrecht