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  1. RLEAAI: improving antibody–antigen interaction prediction using protein language model and sequence order information

    Article • Briefings in Bioinformatics, May 2025, Oxford University Press (OUP)

    Dr. Jun Hu

  2. Ense-i6mA: Identification of DNA N6-Methyladenine Sites Using XGB-RFE Feature Selection and Ensemble Machine Learning

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, November 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  3. E2EATP: Fast and High-Accuracy Protein–ATP Binding Residue Prediction via Protein Language Model Embedding

    Article • Journal of Chemical Information and Modeling, December 2023, American Chemical Society (ACS)

    Dr. Jun Hu

  4. Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism

    Article • Journal of Chemical Information and Modeling, August 2023, American Chemical Society (ACS)

    Dr. Jun Hu

  5. Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm

    Article • Journal of Chemical Information and Modeling, January 2023, American Chemical Society (ACS)

    Dr. Jun Hu

  6. Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based Cube-Format Feature

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, November 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  7. Predicting RNA solvent accessibility from multi-scale context feature via multi-shot neural network

    Article • Analytical Biochemistry, October 2022, Elsevier

    Dr. Jun Hu

  8. Robust distance metric optimization driven GEPSVM classifier for pattern classification

    Article • Pattern Recognition, September 2022, Elsevier

    Dr. Jun Hu

  9. ATPdock: a template-based method for ATP-specific protein–ligand docking

    Article • Bioinformatics, September 2021, Oxford University Press (OUP)

    Dr. Jun Hu

  10. Accurate prediction of protein-ATP binding residues using position-specific frequency matrix

    Article • Analytical Biochemistry, August 2021, Elsevier

    Dr. Jun Hu

  11. Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, March 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  12. TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features

    Article • Journal of Chemical Information and Modeling, January 2021, American Chemical Society (ACS)

    Dr. Jun Hu

  13. Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, November 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  14. Identification of ligand-binding residues using protein sequence profile alignment and query-specific support vector machine model

    Article • Analytical Biochemistry, September 2020, Elsevier

    Dr. Jun Hu

  15. scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures

    Article • Bioinformatics, May 2020, Oxford University Press (OUP)

    Dr. Jun Hu

  16. Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features

    Article • Briefings in Bioinformatics, May 2020, Oxford University Press (OUP)

    Dr. Jun Hu

  17. Loop Enhanced Conformational Resampling Method for Protein Structure Prediction

    Article • IEEE Transactions on NanoBioscience, October 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  18. TargetDBP: Accurate DNA-Binding Protein Prediction via Sequence-based Multi-View Feature Learning

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  19. LS-align: an atom-level, flexible ligand structural alignment algorithm

    Article • Bioinformatics, February 2018, Oxford University Press (OUP)

    Dr. Jun Hu

  20. Accurate Protein–ATP Binding Site Prediction

    Article • Journal of Chemical Information and Modeling, February 2018, American Chemical Society (ACS)

    Dr. Jun Hu

  21. Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, November 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jun Hu

  22. building facades stitching

    Article • Electronics Letters, January 2016, the Institution of Engineering and Technology (the IET)

    Wuxia Yan, Dr. Jun Hu