All Stories

  1. Forging together: Parallel adaptation to minewater pollution in brown trout ( Salmo trutta L.)

    Article • June 2026, openRxiv

    Josie Paris

  2. Repeated signatures of balancing selection in small and large populations of guppies ( Poecilia reticulata )

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, June 2026, Royal Society Publishing

    Josie Paris

  3. A high-quality reference genome and tissue expression atlas for the European lobster ( Homarus gammarus )

    Article • Genome Biology and Evolution, June 2026, Oxford University Press (OUP)

    Josie Paris

  4. ERGA-BGE reference genome of the Eurasian Woodcock (Scolopax rusticola), a game bird species with isolated populations of conservation interest

    Article • Open Research Europe, April 2026, Faculty of 1000, Ltd.

    Josie Paris

  5. Developmental priming increases copper-tolerance in a model fish species via epigenetic-and microbiome-mediated mechanisms

    Article • November 2025, Cold Spring Harbor Laboratory Press

    Josie Paris

  6. A high-quality reference genome and tissue expression atlas for the European lobster (Homarus gammarus)

    Article • October 2025, Cold Spring Harbor Laboratory Press

    Josie Paris

  7. Chromosome-level genome assembly of the Tyrrhenian tree frog (Hyla sarda)

    Article • Scientific Data, September 2025, Springer Science + Business Media

    Josie Paris

  8. Hybridization prevents inbreeding in a Critically Endangered Mediterranean seabird

    Article • Proceedings of the National Academy of Sciences, August 2025, Proceedings of the National Academy of Sciences

    Josie Paris, Guillem Izquierdo Arànega

  9. Early-life stress as a potential resilience factor in king penguins

    Article • July 2025, Cold Spring Harbor Laboratory Press

    Josie Paris

  10. Repeated signatures of balancing selection in small and large populations of guppies (Poecilia reticulata)

    Article • June 2025, Cold Spring Harbor Laboratory Press

    Josie Paris

  11. High Gene Expression Predicts Extremely Low Segregation of Deleterious Mutations in Large Penguin Populations

    Article • Molecular Biology and Evolution, June 2025, Oxford University Press (OUP)

    Josie Paris

  12. Two genomes of the white perch (Morone americana), an ecologically important teleost

    Article • Journal of Heredity, May 2025, Oxford University Press (OUP)

    Josie Paris

  13. Evolutionarily distinct lineages of a migratory bird of prey show divergent responses to climate change

    Article • Nature Communications, April 2025, Springer Science + Business Media

    Josie Paris

  14. A chromosome-level genome of the King penguin (Aptenodytes patagonicus): an emerging model-in-the-wild for studying evolution

    Article • March 2025, Cold Spring Harbor Laboratory Press

    Josie Paris

  15. The Genomic Signature and Transcriptional Response of Metal Tolerance in Brown Trout Inhabiting Metal‐Polluted Rivers

    Article • Molecular Ecology, November 2024, Wiley

    Josie Paris

  16. Pervasive and recurrent hybridisation prevents inbreeding depression in Europe’s most threatened seabird

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Josie Paris

  17. Gene Expression Shifts in Emperor Penguin Adaptation to the Extreme Antarctic Environment

    Article • Molecular Ecology, October 2024, Wiley

    Josie Paris

  18. Does hybridisation with an invasive species threaten Europe’s most endangered reptile? Genomic assessment of Aeolian lizards on Vulcano Island

    Article • iScience, October 2024, Elsevier

    Josie Paris

  19. Combining population genomics and transcriptomics to identify signatures of metal tolerance in brown trout inhabiting metal-polluted rivers

    Article • June 2024, Cold Spring Harbor Laboratory Press

    Josie Paris

  20. Genetic divergence and adaptation of an isolated European lobster population in the Netherlands

    Article • ICES Journal of Marine Science, May 2024, Oxford University Press (OUP)

    Josie Paris

  21. Does hybridisation with an invasive species threaten Europe’s most endangered reptile? Genomic assessment of Aeolian lizards on Vulcano island

    Article • April 2024, Cold Spring Harbor Laboratory Press

    Josie Paris

  22. Gene expression shifts in Emperor penguin adaptation to the extreme Antarctic environment

    Article • November 2023, Cold Spring Harbor Laboratory Press

    Josie Paris

  23. Selection despite low genetic diversity and high gene flow in a rapid island invasion of the bumblebee, Bombus terrestris

    Article • Molecular Ecology, November 2023, Wiley

    Josie Paris

  24. Genetic depletion does not prevent rapid evolution in island‐introduced lizards

    Article • Ecology and Evolution, November 2023, Wiley

    Josie Paris

  25. Reconstructing the complex colonisation histories of lizards across Mediterranean archipelagos

    Article • Journal of Biogeography, October 2023, Wiley

    Josie Paris

  26. Corrigendum to “Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds” [Mol. Phylogenet. Evol. 179 (2023) 107671]

    Article • Molecular Phylogenetics and Evolution, October 2023, Elsevier

    Josie Paris

  27. Gene expression is the main driver of purifying selection in large penguin populations

    Article • August 2023, Cold Spring Harbor Laboratory Press

    Josie Paris

  28. A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird

    Article • Genome Biology and Evolution, August 2023, Oxford University Press (OUP)

    Josie Paris

  29. Selection despite low genetic diversity and high gene flow in a rapid island invasion of the bumblebee, Bombus terrestris

    Article • July 2023, Authorea, Inc.

    Josie Paris

  30. The First Genome of the Cold-Water Octocoral, the Pink Sea Fan, Eunicella verrucosa

    Article • Genome Biology and Evolution, May 2023, Oxford University Press (OUP)

    Josie Paris

  31. SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP‐array

    Article • Evolutionary Applications, April 2023, Wiley

    Josie Paris

  32. Species delimitation using genomic data to resolve taxonomic uncertainties in a speciation continuum of pelagic seabirds

    Article • Molecular Phylogenetics and Evolution, February 2023, Elsevier

    Josie Paris

  33. AF‐vapeR: A multivariate genome scan for detecting parallel evolution using allele frequency change vectors

    Article • Methods in Ecology and Evolution, August 2022, Wiley

    Josie Paris

  34. Rapid genomic convergent evolution in experimental populations of Trinidadian guppies (Poecilia reticulata)

    Article • Evolution Letters, April 2022, Oxford University Press (OUP)

    Josie Paris

  35. A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy

    Article • Nature Communications, March 2022, Springer Science + Business Media

    Josie Paris

  36. On the genetic architecture of rapidly adapting and convergent life history traits in guppies

    Article • Heredity, March 2022, Springer Science + Business Media

    Josie Paris

  37. Genomic divergence and a lack of recent introgression between commercial and wild bumblebees (Bombus terrestris)

    Article • Evolutionary Applications, March 2022, Wiley

    Josie Paris

  38. AF-vapeR: A multivariate genome scan for detecting parallel evolution using allele frequency change vectors

    Article • September 2021, Cold Spring Harbor Laboratory Press

    Josie Paris

  39. Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies

    Article • PLoS Genetics, May 2021, PLOS

    Josie Paris

  40. A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy

    Article • April 2021, Cold Spring Harbor Laboratory Press

    Josie Paris

  41. On the genetic architecture of rapidly adapting and convergent life history traits in guppies

    Article • March 2021, Cold Spring Harbor Laboratory Press

    Josie Paris

  42. Rapid genomic convergent evolution in experimental populations of Trinidadian guppies (Poecilia reticulata)

    Article • February 2021, Cold Spring Harbor Laboratory Press

    Josie Paris

  43. Investigation into Adaptation in Genes Associated with Response to Estrogenic Pollution in Populations of Roach (Rutilus rutilus) Living in English Rivers

    Article • Environmental Science & Technology, November 2020, American Chemical Society (ACS)

    Josie Paris, Professor Susan Jobling

  44. Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies

    Article • October 2020, Cold Spring Harbor Laboratory Press

    Josie Paris

  45. Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata)

    Article • Genome Biology and Evolution, August 2020, Oxford University Press (OUP)

    Josie Paris

  46. Improved reference genome uncovers novel sex-linked regions in the guppy (Poecilia reticulata)

    Article • August 2020, Cold Spring Harbor Laboratory Press

    Josie Paris

  47. A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach ( Rutilus rutilus )

    Article • Molecular Ecology Resources, April 2020, Wiley

    Josie Paris, Dr David J Studholme

  48. RAD-Seq Analysis and in situ Monitoring of Nassau Grouper Reveal Fine-Scale Population Structure and Origins of Aggregating Fish

    Article • Frontiers in Marine Science, March 2020, Frontiers

    Josie Paris

  49. Publisher Correction: Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis

    Article • Scientific Reports, December 2019, Springer Science + Business Media

    Josie Paris

  50. Functional genomic characterization of metallothioneins in brown trout (Salmo trutta L.). using synthetic genetic analysis

    Article • Scientific Reports, August 2019, Springer Science + Business Media

    Josie Paris

  51. Understanding and managing fish populations: keeping the toolbox fit for purpose

    Article • Journal of Fish Biology, March 2018, Wiley

    Josie Paris

  52. Atlantic salmonSalmo salarin the chalk streams of England are genetically unique

    Article • Journal of Fish Biology, January 2018, Wiley

    Josie Paris

  53. Lost in parameter space: a road map for stacks

    Article • Methods in Ecology and Evolution, April 2017, Wiley

    Josie Paris

  54. Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo truttaL.) populations

    Article • Evolutionary Applications, May 2015, Wiley

    Josie Paris